Non-Coding RNA Search

Ss1.1-Pig4-TMW8061K06.5

Sequence:


               
               GTGGCGGCAGAGCATGCATTCAAGAGGTCCCGCATGCCCATCCATCATACCCAATGGTGG
CAGCATGGAATAAAGCCCCCATGTCACCCTCGGCCCCATCACCCAATGCAGTGTCGGGAG
AGCTGCCCCTCTGTGCAGAGCTCACCATCATTCTCCCCGAGACCCGCCCTAGCTGTGTGT
GAGGGTGCCAGGCAGGGCGCCCGAGCCCAAGCCATGGGCCTCACGGGCTGGATAGGTGAG
AAGGAGACCGGCCACTCGGGGTAGGTGTTATGGGATAAGGAAGCCCAAGGTCTTCGCCAG
TAAAAGAGGTTCTGTTTTATATGGAACTTTCCAGTCACCTGTGTAAAGGAAGGTCTGAGG
GAGAGGAGCTCTGGATCAAGGCCACCTCCCTCAATGGCTCTAGCTCCCGAGGCCGAGCAG
CAAGGCCCCTTCCTGCACTCGGCGCGGGCCCGTTCGTTCTTTCCAGCAGATAAAGGGTCA
TGTCAGTGGGATGGAAACAGCAAACGCCCTCAGACTTTCTTTTCCCTTTGACATAAACTT
GAAGCATTTTGTGTGTGGGGTTGCTTTGTGTTTTGTGGTTGCTATGCTGCTGTCACTTTC
CATCAAGGAGCTGGCGTGCCAGGCATGGCTAGGACCTCGACGGCCCCAGCCCTGTTTGTC
CAAGAATTGCCCCAACAGCGGCTCCACTTAGGAACCTGCTCAGCAGTTGTGTGAGCTCAG
GCAGGCCTGACCTGGCAGCTCAGCTTCACAGCAGCCTTGTCCCCGAGCCCTGACAGAGAG
GGAAGGGCGCTGTTGTCCCGAGTGCCACCCCAACCTTGCCCTCTCCCTCCGCGAAGAACC
CCCCCCCGCCCCCACCACCGCTAGATGTAGCGATGGGGCTCAAGTCCCTGGACCTCCAGG
CAGCCCGTGCGTCCGGGTGGAGAATGAGGTGGGACGCAGCCACTGTGGAGTGAGTCTACT
CTGCCTCCAAGTGAGGCGACAGCTGCTTGTAGGAAACCAGCAGAAGGGCCCTGAGCTGCC
ATGCCCAGTCGGGCCTGATTTCTGGAGCTCCCGCCAGCCTCTGCCGTGGGCATCCTGCCA
TGTGTTGCAATCGTCAAGGTGAACACACTCCCCTGGGAAGCTGGAGTGGTGACTGTCGCG
GGGCCCCCATGCAGCCCTCGGGCCGGTCCAGGGGCCTTCTGAGGACCCTGTCATGGTCCC
AGGGCCTCATCCTTCCCCGGCCCGGCCCAGGGAGGAGGGCCCTGGCCGCTCTGTTGCGTG
TGCTAATGTCAGCGGTTCAGTTCATCGCGGCTCAACCATTTTTCCTTCCCTGGAATCGTT
TGCCGTGCTTCCCTGCAGCATCTCACCGTGTTGGGGGTTGGGGTGCCAGCTGCCAGGCGG
GGTTTGGAAGCCTCGGGCTCTGGGTGTGCGGAGTGTGTTCATGTGGGTGTGTGTGTACAT
ACGTGTATATAACTGAGGTGTCTGTACGGAATGCCCTTTGGTAGCTCTGAGGTGGTCACC
AGATTGTTTTGTAACGCTCCCCGCCCTTGCCTCGGTATTGCCAGTTTCTTGTGCAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCGGCAGAGCATGCATTCAAGAGGTCCCGCATGCCCATCCATCATACCCAATGGTGG
CAGCATGGAATAAAGCCCCCATGTCACCCTCGGCCCCATCACCCAATGCAGTGTCGGGAG
AGCTGCCCCTCTGTGCAGAGCTCACCATCATTCTCCCCGAGACCCGCCCTAGCTGTGTGT
GAGGGTGCCAGGCAGGGCGCCCGAGCCCAAGCCATGGGCCTCACGGGCTGGATAGGTGAG
AAGGAGACCGGCCACTCGGGGTAGGTGTTATGGGATAAGGAAGCCCAAGGTCTTCGCCAG
TAAAAGAGGTTCTGTTTTATATGGAACTTTCCAGTCACCTGTGTAAAGGAAGGTCTGAGG
GAGAGGAGCTCTGGATCAAGGCCACCTCCCTCAATGGCTCTAGCTCCCGAGGCCGAGCAG
CAAGGCCCCTTCCTGCACTCGGCGCGGGCCCGTTCGTTCTTTCCAGCAGATAAAGGGTCA
TGTCAGTGGGATGGAAACAGCAAACGCCCTCAGACTTTCTTTTCCCTTTGACATAAACTT
GAAGCATTTTGTGTGTGGGGTTGCTTTGTGTTTTGTGGTTGCTATGCTGCTGTCACTTTC
CATCAAGGAGCTGGCGTGCCAGGCATGGCTAGGACCTCGACGGCCCCAGCCCTGTTTGTC
CAAGAATTGCCCCAACAGCGGCTCCACTTAGGAACCTGCTCAGCAGTTGTGTGAGCTCAG
GCAGGCCTGACCTGGCAGCTCAGCTTCACAGCAGCCTTGTCCCCGAGCCCTGACAGAGAG
GGAAGGGCGCTGTTGTCCCGAGTGCCACCCCAACCTTGCCCTCTCCCTCCGCGAAGAACC
CCCCCCCGCCCCCACCACCGCTAGATGTAGCGATGGGGCTCAAGTCCCTGGACCTCCAGG
CAGCCCGTGCGTCCGGGTGGAGAATGAGGTGGGACGCAGCCACTGTGGAGTGAGTCTACT
CTGCCTCCAAGTGAGGCGACAGCTGCTTGTAGGAAACCAGCAGAAGGGCCCTGAGCTGCC
ATGCCCAGTCGGGCCTGATTTCTGGAGCTCCCGCCAGCCTCTGCCGTGGGCATCCTGCCA
TGTGTTGCAATCGTCAAGGTGAACACACTCCCCTGGGAAGCTGGAGTGGTGACTGTCGCG
GGGCCCCCATGCAGCCCTCGGGCCGGTCCAGGGGCCTTCTGAGGACCCTGTCATGGTCCC
AGGGCCTCATCCTTCCCCGGCCCGGCCCAGGGAGGAGGGCCCTGGCCGCTCTGTTGCGTG
TGCTAATGTCAGCGGTTCAGTTCATCGCGGCTCAACCATTTTTCCTTCCCTGGAATCGTT
TGCCGTGCTTCCCTGCAGCATCTCACCGTGTTGGGGGTTGGGGTGCCAGCTGCCAGGCGG
GGTTTGGAAGCCTCGGGCTCTGGGTGTGCGGAGTGTGTTCATGTGGGTGTGTGTGTACAT
ACGTGTATATAACTGAGGTGTCTGTACGGAATGCCCTTTGGTAGCTCTGAGGTGGTCACC
AGATTGTTTTGTAACGCTCCCCGCCCTTGCCTCGGTATTGCCAGTTTCTTGTGCAATAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               222-337, - strand, RNAz p=0.851944
               

               
               580-778, - strand, RNAz p=0.880681
               

               
               1350-1457, - strand, RNAz p=0.606605

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               222-337, - strand, RNAz p=0.851944
               

               
               580-778, - strand, RNAz p=0.880681
               

               
               1350-1457, - strand, RNAz p=0.606605

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1560, gnl|bosTau2|chr18 (30544324-30545921)
               

               
               1-1560, gnl|Hg17|chr16 (68531481-68533130)
               

               
               1-1560, gnl|Mm7|chr8 (106157264-106158725)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1560, gnl|bosTau2|chr18 (30544324-30545921)
               

               
               1-1560, gnl|Hg17|chr16 (68531481-68533130)
               

               
               1-1560, gnl|Mm7|chr8 (106157264-106158725)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               nca (0.136874)
               

               
               cly (0.120642)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	222-337, - strand, RNAz p=0.851944
	580-778, - strand, RNAz p=0.880681
	1350-1457, - strand, RNAz p=0.606605

	1-1560, gnl\|bosTau2\|chr18 (30544324-30545921)
	1-1560, gnl\|Hg17\|chr16 (68531481-68533130)
	1-1560, gnl\|Mm7\|chr8 (106157264-106158725)

	fhi (0.169578)
	nco (0.161734)
	nca (0.136874)
	cly (0.120642)
	cty (0.10408)
	jej (0.0989218)