Ss1.1-Pig4-TMW8061K12.3
|
GGTGGCAAGATGGCCGCCGCTGGGGAGGGTGGTGGTGTTGGGGCTGAAGCGGACCGGGAA
TTGGAAGAGCTTCTGGAAAGTGCTCTTGATGATTTCGATAAGACCAAACCCTCCCCAGCA
CCCCCTCCTACCACCACGGCCCCTGATGCTTCGGGGCCTGAGAAGAGATCTCCAGGAGAC
ACTGCCAAAGATGCCCTCTTCGCCTCCCAAGAGAAGTTTTTCCAGGAGCTGTTCGACAGC
GAGTTGGCTTCCCAAGCCACTGCAGAGTTCGAGAAGGCAATGAAAGAGTTGGCTGAGGAA
GAGCCCCACCTGGTAGAGCAGTTCCAAAAGCTCTCAGAGGCTGCTGGGAGAGTGGGCAGT
GATGCGACTTCCCAACAAGAATTCACTTCTTGCCTAAAGGAGACATTAAGTGGACTAGCC
AAGAATGCCACCGACCTTCAGAACTCCGGCATGTCAGAAGAGGAGCTGACCAAGGCCATG
GAAGGGCTGGGCATGGAAGAAGGGGATGGAGAAGGAACCATACTCCCCATCATGCAGAAT
ATCATGCAGAACCTGCTGTCCAAGGATGTACTGTACCCGTCACTGAAGGAGATTACGGAG
AAGTATCCAGAATGGTTGCAGGTTCACCGAGAATCTCTACCTCCAGAGCAGTTTGAAAAA
TATCAGGAGCAACATAGTGTCATGGGCAAGATATGTGAGCAATTTGAGGCTGAGACCCCC
ACAGACAGTGAGGCCACTCAGAAGGCTCGTTTTGAGGTGGTGCTGGATCTTATGCAGCAG
CTACAGGATTTGGGCCATCCTCCAAAAGAGCTGGCTGGGGAGATGCCTCCTGGCCTCAAC
TTTGACCTGGATGCCCTCAATCTATCGGGCCCACCAGGTGCCAATGGCGAACAATGTCTG
ATCATGTGAAACACAGCACGCTTTCCTTCCTGATTCCCAGCTGTGGGGAACGACTGGAGT
CAGCAGAACCACTGGGAGCTGAGGCAGGAGTGTCGTCTACAGGAGTGGTCTGCCCACTGC
CATCTGTCATGCCACCCAAGATTGTGCCATACCAGCTGAGGCTTTCTCTCTGTCTTTCTG
AGAATAAGGCCTGTTCCACAGCTCATTTCTGTGAGCCCGTTCCATTGTGGTTTCTGCTGC
TAGCAAAGGCCCGGCTCCCCACCAGGTGAAGGAGGCATCGGTTTTAAGGCATGCATCTTC
TTCCCTCTCCCAAGATAACGTGTAGGGCCACACTAATGTTCACTTTTGTACCCAGGGTCT
TTGTGCCTTGTCTCTACTCCCTCTCTTGGACCCCGGGGAGCAGGGACAGAGTCCTGGGAC
TCTGTTTCTACAGTTCTCTTGGGCAGGGCCTTTGGGAATGAATGGGGAGAAACTTAGCCT
GAGCTGGGACTACAGGTCTGTCACTACACCCTCTTACCTTCAGACCGTTCTGAATTTTCT
GAAGAGAAAGTGAGGGGGTTGCATCTAATCTCTGTAGATTGAAAAAGAAATGCTGGGATT
CTTCTCTCTCCAGGTACAGAGCCCCCAGCTCCTGGTTCCAACCTGAGAACTCAGAGAGCT
GCCCTGGTTCTTTCTGCAGTGCTCTGTGATCTGGGAGAACCCAGTCCTTGACCATCCTTT
CCCTCCTGCCTGCCCTCTCATCTCTCCATATCAAAAACCTCTTTATTCTGAGCCCAAGCT
GTGAGAAAGAAGGACCCATCCTGATTCCCCTCTAGTCTCTACCATTCTCAGTGGTCCCCT
TTCTCCCTGGCAGACATATGTGATTATAGTGTCAGGTCTAGGAACTGAATGACTGTTCTT
CCCCAGATACATTCCAGCTTACTTGAGACATCTGATTCCTTTGAATCCTGTCCCTTGGTT
CAGGGAGGTGGCTTGGGGAAAGGGGGTGGGGTGCAACCTGGGTCCTTTTTCCTGACTAAT
AAATATTCTGAGTGAGAAAAAAAACCTATTTTTCATCCAAGTCTTTTCCCGATCTTCCTC
AGCTCCTCTAAGCTGCTGCTGAGGAATATCAGCAGACTAGTTCTGCAGAGCGTGACAGTG
CTGGGTTTTGGCACCACCTCCCTTGCCCAGCCCAGGCTAAGTTTCTCCCCATCCAATCCG
TGTCTGCAACCTACGCCACAGCTCACAGCAGCACCAGATCTTCCCTTGCCCAGCCCAGTC
GGCAACTCAGTTGATAAAGGAGAC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGTGGCAAGATGGCCGCCGCTGGGGAGGGTGGTGGTGTTGGGGCTGAAGCGGACCGGGAA
TTGGAAGAGCTTCTGGAAAGTGCTCTTGATGATTTCGATAAGACCAAACCCTCCCCAGCA
CCCCCTCCTACCACCACGGCCCCTGATGCTTCGGGGCCTGAGAAGAGATCTCCAGGAGAC
ACTGCCAAAGATGCCCTCTTCGCCTCCCAAGAGAAGTTTTTCCAGGAGCTGTTCGACAGC
GAGTTGGCTTCCCAAGCCACTGCAGAGTTCGAGAAGGCAATGAAAGAGTTGGCTGAGGAA
GAGCCCCACCTGGTAGAGCAGTTCCAAAAGCTCTCAGAGGCTGCTGGGAGAGTGGGCAGT
GATGCGACTTCCCAACAAGAATTCACTTCTTGCCTAAAGGAGACATTAAGTGGACTAGCC
AAGAATGCCACCGACCTTCAGAACTCCGGCATGTCAGAAGAGGAGCTGACCAAGGCCATG
GAAGGGCTGGGCATGGAAGAAGGGGATGGAGAAGGAACCATACTCCCCATCATGCAGAAT
ATCATGCAGAACCTGCTGTCCAAGGATGTACTGTACCCGTCACTGAAGGAGATTACGGAG
AAGTATCCAGAATGGTTGCAGGTTCACCGAGAATCTCTACCTCCAGAGCAGTTTGAAAAA
TATCAGGAGCAACATAGTGTCATGGGCAAGATATGTGAGCAATTTGAGGCTGAGACCCCC
ACAGACAGTGAGGCCACTCAGAAGGCTCGTTTTGAGGTGGTGCTGGATCTTATGCAGCAG
CTACAGGATTTGGGCCATCCTCCAAAAGAGCTGGCTGGGGAGATGCCTCCTGGCCTCAAC
TTTGACCTGGATGCCCTCAATCTATCGGGCCCACCAGGTGCCAATGGCGAACAATGTCTG
ATCATGTGAAACACAGCACGCTTTCCTTCCTGATTCCCAGCTGTGGGGAACGACTGGAGT
CAGCAGAACCACTGGGAGCTGAGGCAGGAGTGTCGTCTACAGGAGTGGTCTGCCCACTGC
CATCTGTCATGCCACCCAAGATTGTGCCATACCAGCTGAGGCTTTCTCTCTGTCTTTCTG
AGAATAAGGCCTGTTCCACAGCTCATTTCTGTGAGCCCGTTCCATTGTGGTTTCTGCTGC
TAGCAAAGGCCCGGCTCCCCACCAGGTGAAGGAGGCATCGGTTTTAAGGCATGCATCTTC
TTCCCTCTCCCAAGATAACGTGTAGGGCCACACTAATGTTCACTTTTGTACCCAGGGTCT
TTGTGCCTTGTCTCTACTCCCTCTCTTGGACCCCGGGGAGCAGGGACAGAGTCCTGGGAC
TCTGTTTCTACAGTTCTCTTGGGCAGGGCCTTTGGGAATGAATGGGGAGAAACTTAGCCT
GAGCTGGGACTACAGGTCTGTCACTACACCCTCTTACCTTCAGACCGTTCTGAATTTTCT
GAAGAGAAAGTGAGGGGGTTGCATCTAATCTCTGTAGATTGAAAAAGAAATGCTGGGATT
CTTCTCTCTCCAGGTACAGAGCCCCCAGCTCCTGGTTCCAACCTGAGAACTCAGAGAGCT
GCCCTGGTTCTTTCTGCAGTGCTCTGTGATCTGGGAGAACCCAGTCCTTGACCATCCTTT
CCCTCCTGCCTGCCCTCTCATCTCTCCATATCAAAAACCTCTTTATTCTGAGCCCAAGCT
GTGAGAAAGAAGGACCCATCCTGATTCCCCTCTAGTCTCTACCATTCTCAGTGGTCCCCT
TTCTCCCTGGCAGACATATGTGATTATAGTGTCAGGTCTAGGAACTGAATGACTGTTCTT
CCCCAGATACATTCCAGCTTACTTGAGACATCTGATTCCTTTGAATCCTGTCCCTTGGTT
CAGGGAGGTGGCTTGGGGAAAGGGGGTGGGGTGCAACCTGGGTCCTTTTTCCTGACTAAT
AAATATTCTGAGTGAGAAAAAAAACCTATTTTTCATCCAAGTCTTTTCCCGATCTTCCTC
AGCTCCTCTAAGCTGCTGCTGAGGAATATCAGCAGACTAGTTCTGCAGAGCGTGACAGTG
CTGGGTTTTGGCACCACCTCCCTTGCCCAGCCCAGGCTAAGTTTCTCCCCATCCAATCCG
TGTCTGCAACCTACGCCACAGCTCACAGCAGCACCAGATCTTCCCTTGCCCAGCCCAGTC
GGCAACTCAGTTGATAAAGGAGAC
|
|
gi|61875772|ref|XP_599786.1| |
Protein identifier
|
gi|61875772|ref|XP_599786.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3' of AB062286, + |
|
5' of AB062286, + |
Human gene identifier and UTR site,
human gene reading direction
|
3' of AB062286, + |
|
5' of AB062286, + |
|
190-367, gnl|bosTau2|chr3 (4766843-4767020) |
|
190-367, gnl|Hg17|chr1 (157065972-157065791) |
|
190-367, gnl|Mm7|chr1 (172099328-172099507) |
| |
|
602-783, gnl|bosTau2|chr3 (4768595-4768776) |
|
602-783, gnl|canFam2|chr38 (24943271-24943067) |
|
602-783, gnl|danRer3|chr2 (35257830-35257996) |
|
602-783, gnl|echTel1|scaffold_319549 (145575-145779) |
|
602-783, gnl|fr1|chrUn (251369238-251369050) |
|
602-783, gnl|hg17|chr1 (157062928-157063132) |
|
602-783, gnl|Hg17|chr1 (157063111-157062930) |
|
602-783, gnl|mm7|chr1 (172103486-172103284) |
|
602-783, gnl|Mm7|chr1 (172103301-172103482) |
|
602-783, gnl|monDom2|scaffold_13 (61250801-61250597) |
|
602-783, gnl|oryCun1|scaffold_173510 (39159-38954) |
|
602-783, gnl|panTro1|chr1 (139141042-139141248) |
|
602-783, gnl|rheMac2|chr1 (138900436-138900640) |
|
602-783, gnl|rn3|chr13 (88318603-88318397) |
|
602-783, gnl|xenTro1|scaffold_96 (1170805-1170617) |
| |
|
825-2013, gnl|bosTau2|chr3 (4769144-4770346) |
|
825-2013, gnl|Hg17|chr1 (157062498-157061276) |
|
825-2013, gnl|Mm7|chr1 (172104379-172105549) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
190-367, gnl|bosTau2|chr3 (4766843-4767020) |
|
190-367, gnl|Hg17|chr1 (157065972-157065791) |
|
190-367, gnl|Mm7|chr1 (172099328-172099507) |
| |
|
602-783, gnl|bosTau2|chr3 (4768595-4768776) |
|
602-783, gnl|canFam2|chr38 (24943271-24943067) |
|
602-783, gnl|danRer3|chr2 (35257830-35257996) |
|
602-783, gnl|echTel1|scaffold_319549 (145575-145779) |
|
602-783, gnl|fr1|chrUn (251369238-251369050) |
|
602-783, gnl|hg17|chr1 (157062928-157063132) |
|
602-783, gnl|Hg17|chr1 (157063111-157062930) |
|
602-783, gnl|mm7|chr1 (172103486-172103284) |
|
602-783, gnl|Mm7|chr1 (172103301-172103482) |
|
602-783, gnl|monDom2|scaffold_13 (61250801-61250597) |
|
602-783, gnl|oryCun1|scaffold_173510 (39159-38954) |
|
602-783, gnl|panTro1|chr1 (139141042-139141248) |
|
602-783, gnl|rheMac2|chr1 (138900436-138900640) |
|
602-783, gnl|rn3|chr13 (88318603-88318397) |
|
602-783, gnl|xenTro1|scaffold_96 (1170805-1170617) |
| |
|
825-2013, gnl|bosTau2|chr3 (4769144-4770346) |
|
825-2013, gnl|Hg17|chr1 (157062498-157061276) |
|
825-2013, gnl|Mm7|chr1 (172104379-172105549) |
|
csp (0.322373) |
|
eep (0.245128) |
|
eru (0.240096) |
|
med (0.232504) |
|
nms (0.213858) |
|
mas (0.210305) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
cli (0.152812) |
|
fat (0.147427) |
|
pty (0.142714) |
|
ssp (0.13552) |
|
cov (0.132153) |
|
ecc (0.115035) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
csp (0.322373) |
|
eep (0.245128) |
|
eru (0.240096) |
|
med (0.232504) |
|
nms (0.213858) |
|
mas (0.210305) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
cli (0.152812) |
|
fat (0.147427) |
|
pty (0.142714) |
|
ssp (0.13552) |
|
cov (0.132153) |
|
ecc (0.115035) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
