Non-Coding RNA Search

Ss1.1-Pig4-TMW8061K13.5

Sequence:


               
               GGAGTGGGAACTTGGCTTTTATTCACATCAGTTTCTAACAAATTTTGGGATAAAGATAAA
ATGTACTTTATTACTTTTCTGGAATTCAGTTTGAGATGATTTTTTCCCCCTCTTTACATT
CAGGTTTGTGCCTTCTCCCCTAAGTTTGGCAGGTAGCTTACAAACTCTTTAATATCAGGT
AGGTCCTTAGTGAAAAAATGTTCTGGAAGCTCACCTATCATGTTGTTGGAATGGCAGCAT
ACCTCCAATCCATCGATTATTTGGAAAGCAGCTGGTTTTTCTCCATGTTTTCTGTATCAG
TGGTTTTCATACTTAGCTGCTTAGTAGAGTGCAGCTTGAGCGATGGGGTGTTCTAAACTT
TCCAGGTATTTCCAAAATACAGCCAAGTTTGAGAACCCCTGCTCCTTGTTGTTAACCTCA
AACTGCTTCTCTCAGATTCCAGATTCTGTGCTGTGAATCTGAATATGGGGCGCATTTTCT
TTAGTTGACAAGAATAATTCATTTACCTTAAGTGTTTACTGAGCTGTATGGCAATCTTAG
AAACTAAGAGCTGTTAATCCAGTTGATAAGGTTGATGCAGTGTGGCCTCGTTTTGGTAGT
TTACTACATGGAGTCATGTTGGCTTGTTTCCATTACTACGCTAGAACTAAGCTGGGCTCC
TTGGGAAGAGGTTAGGAAGAAAAGCAAGTCTAATTAGCTTTACTGTTTTAACCAGTGTGT
CTTTCTCATTTCTTGTTGATCATACTAGGGAGAGATACTTGGGTCATGCTGTGAGACTCT
GGGCACCAGGGACCGTATATCCCTGTATATCTTAGTACAGTGGCATATAGGTCCATCTTG
ATCACTGCTGTATCACTGGCCTAGAGCAGTGTTTGACACACTATGAGATGGCTCTGAAAA
TAGTTGTTGGATGGGTACATGGTTCCAAGGATGAATGAATGAAATAAAGCAGGTCACATA
GTTGTGTTGATGAATTATCCACACATCAGAAGAACAGTGGTGACAAGAGGATTGATTGAA
GCTAGCATGGTTTTCTAGTTAAGTATTTTTAATTTGACTTCTACATATCAGAAGAACATA
GGTGGCAGATGGATGAAGCTAATGGTTTTCTATTTAAATATGGTTTTCTGTTTGACCTAA
CAAATGCATCGGTCATCTGGCTTAGTGAGTGATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTGGGAACTTGGCTTTTATTCACATCAGTTTCTAACAAATTTTGGGATAAAGATAAA
ATGTACTTTATTACTTTTCTGGAATTCAGTTTGAGATGATTTTTTCCCCCTCTTTACATT
CAGGTTTGTGCCTTCTCCCCTAAGTTTGGCAGGTAGCTTACAAACTCTTTAATATCAGGT
AGGTCCTTAGTGAAAAAATGTTCTGGAAGCTCACCTATCATGTTGTTGGAATGGCAGCAT
ACCTCCAATCCATCGATTATTTGGAAAGCAGCTGGTTTTTCTCCATGTTTTCTGTATCAG
TGGTTTTCATACTTAGCTGCTTAGTAGAGTGCAGCTTGAGCGATGGGGTGTTCTAAACTT
TCCAGGTATTTCCAAAATACAGCCAAGTTTGAGAACCCCTGCTCCTTGTTGTTAACCTCA
AACTGCTTCTCTCAGATTCCAGATTCTGTGCTGTGAATCTGAATATGGGGCGCATTTTCT
TTAGTTGACAAGAATAATTCATTTACCTTAAGTGTTTACTGAGCTGTATGGCAATCTTAG
AAACTAAGAGCTGTTAATCCAGTTGATAAGGTTGATGCAGTGTGGCCTCGTTTTGGTAGT
TTACTACATGGAGTCATGTTGGCTTGTTTCCATTACTACGCTAGAACTAAGCTGGGCTCC
TTGGGAAGAGGTTAGGAAGAAAAGCAAGTCTAATTAGCTTTACTGTTTTAACCAGTGTGT
CTTTCTCATTTCTTGTTGATCATACTAGGGAGAGATACTTGGGTCATGCTGTGAGACTCT
GGGCACCAGGGACCGTATATCCCTGTATATCTTAGTACAGTGGCATATAGGTCCATCTTG
ATCACTGCTGTATCACTGGCCTAGAGCAGTGTTTGACACACTATGAGATGGCTCTGAAAA
TAGTTGTTGGATGGGTACATGGTTCCAAGGATGAATGAATGAAATAAAGCAGGTCACATA
GTTGTGTTGATGAATTATCCACACATCAGAAGAACAGTGGTGACAAGAGGATTGATTGAA
GCTAGCATGGTTTTCTAGTTAAGTATTTTTAATTTGACTTCTACATATCAGAAGAACATA
GGTGGCAGATGGATGAAGCTAATGGTTTTCTATTTAAATATGGTTTTCTGTTTGACCTAA
CAAATGCATCGGTCATCTGGCTTAGTGAGTGATACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               329-428, - strand, RNAz p=0.581136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               329-428, - strand, RNAz p=0.581136

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               329-451, + strand, RNAmicro p=0.984659

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               329-451, + strand, RNAmicro p=0.984659

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1168, gnl|bosTau2|chr2 (83847087-83845935)
               

               
               1-1168, gnl|Hg17|chr1 (22164798-22165943)
               

               
               1-1168, gnl|Mm7|chr4 (136698092-136696724)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1168, gnl|bosTau2|chr2 (83847087-83845935)
               

               
               1-1168, gnl|Hg17|chr1 (22164798-22165943)
               

               
               1-1168, gnl|Mm7|chr4 (136698092-136696724)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	1-1168, gnl\|bosTau2\|chr2 (83847087-83845935)
	1-1168, gnl\|Hg17\|chr1 (22164798-22165943)
	1-1168, gnl\|Mm7\|chr4 (136698092-136696724)