Non-Coding RNA Search

Ss1.1-Pig4-TMW8061K14.3

Sequence:


               
               TGGGTCCAGCAGCACACAGCGAGGCCCCTGCCTGTTCCCATTCCCTGCTCCATCCCATCC
CCCAACCAACCTGATCTGTCTGCTGCTTGAGTGGGCCACCCGGGCTCCTGCCGCAGGACC
TTTGCACTTTCGGTTATTTCTGCCTAGAATGCTCTACTCCCACATCTACCCCTGACTGGT
TCCTTCTTGTCAATCTGGTCTCAGCTCAAATGTACCCTCAGAGAGGCCCTCCCCAACCGC
TGTAACTGAAGTAGCCCCCACCCCCACCCCTATTATTCATCTTGGCTGGTTATTTTCCCT
TGTAATCATGAAAATCATGTAATCCCTTGTAATAGAGAATTACTTTATTTATTTATTTAT
TTACCTGTTTATTGGCTCTTATCCCCAAGTCTTGGTCCCTGCTGTACCCCCAGCACCTAG
AATAGTGCTTGACACACAGAAGGTGCTTGACTGAGTTCGTTCATCAGTGGCAGAACTAGA
GTTGGAATTTAGGTTGTCGGCCTCTTGCCTCAAGGCAGGGAAAAGGAGTGAGATGGGGGA
GAAACAAGCATCTCCTGGAAGAGGAAGCCCCTGTCTGAGGTCAGGGGACCTGGGAAGGAA
GCACGGCTTTGCCACTGTCACTCTGGGTGACTTGGGCCAGTGCCTTATTTTCCCACCTGA
GAAATGAACGGGCTGGATGAAAACCATACATTCTTTCAAGATCCTACTCAAAGTTACCCT
TCGAGTGTAATTGCTCTGAGGGGCAGGTACTTGAGGGATGTGGCCGTCTTGACCTTGACC
TCCCACCACTGACACAAGGGTGAGAAGGCAAAGACTCTAATACTGAATGGCTCCTGGCAT
TGTCCTCAAGGCTCTTTCGACCTTGGGAGACTGTTGCTCATCCATGTCAGTGATACCCAG
AGTAACACTGTCTCCCTCAGTCCAGAGATCAAGCCTGCCTGCCGTGTGCAGGAGCGGGAG
AGGTGCCGAGCAGTGCTGTCCGGTAGAAAGAGAATGTGAGCCAACATGTAATTTCACATT
TTCTAGTAGCCACGTTAAAAAAAGGAAAAGGAAACAGGAAACGAATTCTAATATGTTTTA
CCCCAATATAGCCAATATTGGAGTTCTCTGGTGGATCAGCAGGTTAAGGATTCTGCATCA
TCACTGCTGTGGCTCTGGTCGCTGTTGTGTTGCAGGTTTGATCTCTGGCTCATGATGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTCCAGCAGCACACAGCGAGGCCCCTGCCTGTTCCCATTCCCTGCTCCATCCCATCC
CCCAACCAACCTGATCTGTCTGCTGCTTGAGTGGGCCACCCGGGCTCCTGCCGCAGGACC
TTTGCACTTTCGGTTATTTCTGCCTAGAATGCTCTACTCCCACATCTACCCCTGACTGGT
TCCTTCTTGTCAATCTGGTCTCAGCTCAAATGTACCCTCAGAGAGGCCCTCCCCAACCGC
TGTAACTGAAGTAGCCCCCACCCCCACCCCTATTATTCATCTTGGCTGGTTATTTTCCCT
TGTAATCATGAAAATCATGTAATCCCTTGTAATAGAGAATTACTTTATTTATTTATTTAT
TTACCTGTTTATTGGCTCTTATCCCCAAGTCTTGGTCCCTGCTGTACCCCCAGCACCTAG
AATAGTGCTTGACACACAGAAGGTGCTTGACTGAGTTCGTTCATCAGTGGCAGAACTAGA
GTTGGAATTTAGGTTGTCGGCCTCTTGCCTCAAGGCAGGGAAAAGGAGTGAGATGGGGGA
GAAACAAGCATCTCCTGGAAGAGGAAGCCCCTGTCTGAGGTCAGGGGACCTGGGAAGGAA
GCACGGCTTTGCCACTGTCACTCTGGGTGACTTGGGCCAGTGCCTTATTTTCCCACCTGA
GAAATGAACGGGCTGGATGAAAACCATACATTCTTTCAAGATCCTACTCAAAGTTACCCT
TCGAGTGTAATTGCTCTGAGGGGCAGGTACTTGAGGGATGTGGCCGTCTTGACCTTGACC
TCCCACCACTGACACAAGGGTGAGAAGGCAAAGACTCTAATACTGAATGGCTCCTGGCAT
TGTCCTCAAGGCTCTTTCGACCTTGGGAGACTGTTGCTCATCCATGTCAGTGATACCCAG
AGTAACACTGTCTCCCTCAGTCCAGAGATCAAGCCTGCCTGCCGTGTGCAGGAGCGGGAG
AGGTGCCGAGCAGTGCTGTCCGGTAGAAAGAGAATGTGAGCCAACATGTAATTTCACATT
TTCTAGTAGCCACGTTAAAAAAAGGAAAAGGAAACAGGAAACGAATTCTAATATGTTTTA
CCCCAATATAGCCAATATTGGAGTTCTCTGGTGGATCAGCAGGTTAAGGATTCTGCATCA
TCACTGCTGTGGCTCTGGTCGCTGTTGTGTTGCAGGTTTGATCTCTGGCTCATGATGCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               480-599, - strand, RNAz p=0.94034

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               480-599, - strand, RNAz p=0.94034

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-169, gnl|bosTau2|chr18 (46240098-46240260)
               

               
               3-169, gnl|Hg17|chr19 (48786302-48785855)
               

               
               3-169, gnl|Mm7|chr7 (21323463-21323609)
               


               
               339-797, gnl|bosTau2|chr18 (46240390-46240849)
               

               
               339-797, gnl|Hg17|chr19 (48785721-48784967)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-169, gnl|bosTau2|chr18 (46240098-46240260)
               

               
               3-169, gnl|Hg17|chr19 (48786302-48785855)
               

               
               3-169, gnl|Mm7|chr7 (21323463-21323609)
               


               
               339-797, gnl|bosTau2|chr18 (46240390-46240849)
               

               
               339-797, gnl|Hg17|chr19 (48785721-48784967)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ecc (0.115035)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fbs (0.175346)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ecc (0.115035)

	3-169, gnl\|bosTau2\|chr18 (46240098-46240260)
	3-169, gnl\|Hg17\|chr19 (48786302-48785855)
	3-169, gnl\|Mm7\|chr7 (21323463-21323609)

	339-797, gnl\|bosTau2\|chr18 (46240390-46240849)
	339-797, gnl\|Hg17\|chr19 (48785721-48784967)

	ebs (0.236602)
	ece (0.229305)
	hea (0.204499)
	fbs (0.175346)
	ski (0.146735)
	hyp (0.142837)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	ecc (0.115035)