Non-Coding RNA Search

Ss1.1-Pig4-TMW8061K16.3

Sequence:


               
               GGGCACGTTCGGTCAGGCCTGCAGCCGGGCCTCGCCTGTGCCCCTCGGGCTGGGTGGCGG
GGCCGGGTTGCCTCGGGCGGTGTGAGACCAGGCGTGCGTGCGTCCGTCTGTCTGTCCGTC
CGTCCGAGGCGCGGTGCGCAAGGAACTGTAGTCCAGCCAGAGCAAAGGCGGTGATCTGGA
GGCTTGTGAGTCGTGTGGCGTTAGCGTGCAGTGAGTGAGTTTCCTCGTAGGAAGACGGGC
GGCTGCCTCCAGCCCGTGTGTCCCGGCGTGTTGATCCAGACGGGCCAGCGAATAGCCCGG
CAAGGAGCAGCGGGCGCTCCGCGTCCCTGCGGAGGTGGTTCCTCCCTTGTCGATGGCTGG
GTTTCCTTTACTAACCTGCTTGAATACTTGAATAAGCCATTCTCCAGTCTTAATCCTTTG
GGGTTATATAATCTGAACTCTGAGAACCTGCACAGAAGCCCTTTGGCGTTAATCTAACCC
AGTGTCCCGATAAAAACATGGGTTCCCTTTACTTTGACAAAGTAATGTAATTTTTACCTT
ATTTATCTGTATGGAATCTCCGCATTTAATTTGAACATTTATTTATATGATGTTTGTATT
TCTAGGTCTCTAATACAGTGTCTCTACCTCTCATTTGTAACTGCATGCATTGTTCCTGAA
GCTAGGTAAACTCACTGCAGTGGTGTGTCATAGCCTTTTTCTTGTTGCCTGCACAGGTGG
ATCTTGGGTAAATAAGACTGACCAGGCGTTTCTAGGGTAAAGCTGGGTGCCCTGGGCCTC
GTCAGGCCACGTCCGCACTCAGCGAGTGAGTGCCCTCTGCCCCAGGATTTCAGGCGTGGG
GACTGTCCTGCGGGCAGCCGGGGCACCGGCTGGTGGCAAGGGCTCGGCCCTCCCTGCAGG
CGCGCTCTGCCTGGTCCTCGTGTGCTGTGTTTTGGGTGATTTTTCCGCGGGTAGAGGGCA
GGCTTTGCTCCCCAGTCCCTGCCCATGTCACCTGCGTCGGTCCTCCTCGCCTTCCTGTCT
GCTCTTTAAACACAGGATGTCACAGGCGCCCGGTGAGGAGGCGCTCGGCCTGACGTCAGC
CCCCAGGGCCGAGGTCGGGCCCGGCTCTGAGCTCCAGGTGCATCTGCTGCTCGTTCGAGG
AAGGCCCAGGGTAGGTGGCGTGTGAAACCCGAAGTCTGAACAGCAGAGAAGAACAGACTG
TGGGTTCATGAGCAATGGCTCTGATTCTCCTTCCGTTGTCAAGGCCGGTTGTTTTAAGAG
ATGTTGCCTTGATTATAGCAATAATAAACAAATGCTTTATGTTTCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCACGTTCGGTCAGGCCTGCAGCCGGGCCTCGCCTGTGCCCCTCGGGCTGGGTGGCGG
GGCCGGGTTGCCTCGGGCGGTGTGAGACCAGGCGTGCGTGCGTCCGTCTGTCTGTCCGTC
CGTCCGAGGCGCGGTGCGCAAGGAACTGTAGTCCAGCCAGAGCAAAGGCGGTGATCTGGA
GGCTTGTGAGTCGTGTGGCGTTAGCGTGCAGTGAGTGAGTTTCCTCGTAGGAAGACGGGC
GGCTGCCTCCAGCCCGTGTGTCCCGGCGTGTTGATCCAGACGGGCCAGCGAATAGCCCGG
CAAGGAGCAGCGGGCGCTCCGCGTCCCTGCGGAGGTGGTTCCTCCCTTGTCGATGGCTGG
GTTTCCTTTACTAACCTGCTTGAATACTTGAATAAGCCATTCTCCAGTCTTAATCCTTTG
GGGTTATATAATCTGAACTCTGAGAACCTGCACAGAAGCCCTTTGGCGTTAATCTAACCC
AGTGTCCCGATAAAAACATGGGTTCCCTTTACTTTGACAAAGTAATGTAATTTTTACCTT
ATTTATCTGTATGGAATCTCCGCATTTAATTTGAACATTTATTTATATGATGTTTGTATT
TCTAGGTCTCTAATACAGTGTCTCTACCTCTCATTTGTAACTGCATGCATTGTTCCTGAA
GCTAGGTAAACTCACTGCAGTGGTGTGTCATAGCCTTTTTCTTGTTGCCTGCACAGGTGG
ATCTTGGGTAAATAAGACTGACCAGGCGTTTCTAGGGTAAAGCTGGGTGCCCTGGGCCTC
GTCAGGCCACGTCCGCACTCAGCGAGTGAGTGCCCTCTGCCCCAGGATTTCAGGCGTGGG
GACTGTCCTGCGGGCAGCCGGGGCACCGGCTGGTGGCAAGGGCTCGGCCCTCCCTGCAGG
CGCGCTCTGCCTGGTCCTCGTGTGCTGTGTTTTGGGTGATTTTTCCGCGGGTAGAGGGCA
GGCTTTGCTCCCCAGTCCCTGCCCATGTCACCTGCGTCGGTCCTCCTCGCCTTCCTGTCT
GCTCTTTAAACACAGGATGTCACAGGCGCCCGGTGAGGAGGCGCTCGGCCTGACGTCAGC
CCCCAGGGCCGAGGTCGGGCCCGGCTCTGAGCTCCAGGTGCATCTGCTGCTCGTTCGAGG
AAGGCCCAGGGTAGGTGGCGTGTGAAACCCGAAGTCTGAACAGCAGAGAAGAACAGACTG
TGGGTTCATGAGCAATGGCTCTGATTCTCCTTCCGTTGTCAAGGCCGGTTGTTTTAAGAG
ATGTTGCCTTGATTATAGCAATAATAAACAAATGCTTTATGTTTCAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               312-900, gnl|bosTau2|chr19 (24583118-24583728)
               

               
               312-900, gnl|Hg17|chr17 (19619117-19618480)
               

               
               312-900, gnl|Mm7|chr11 (61858259-61857607)
               


               
               1112-1305, gnl|bosTau2|chr19 (24583944-24584138)
               

               
               1112-1305, gnl|Hg17|chr17 (19618276-19618062)
               

               
               1112-1305, gnl|Mm7|chr11 (61857396-61857211)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               312-900, gnl|bosTau2|chr19 (24583118-24583728)
               

               
               312-900, gnl|Hg17|chr17 (19619117-19618480)
               

               
               312-900, gnl|Mm7|chr11 (61858259-61857607)
               


               
               1112-1305, gnl|bosTau2|chr19 (24583944-24584138)
               

               
               1112-1305, gnl|Hg17|chr17 (19618276-19618062)
               

               
               1112-1305, gnl|Mm7|chr11 (61857396-61857211)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               fcc (0.593354)
               

               
               hyp (0.42851)
               

               
               ill (0.351185)
               

               
               fce (0.271592)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               hyp (0.42851)
               

               
               ill (0.351185)
               

               
               fce (0.271592)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)

	312-900, gnl\|bosTau2\|chr19 (24583118-24583728)
	312-900, gnl\|Hg17\|chr17 (19619117-19618480)
	312-900, gnl\|Mm7\|chr11 (61858259-61857607)

	1112-1305, gnl\|bosTau2\|chr19 (24583944-24584138)
	1112-1305, gnl\|Hg17\|chr17 (19618276-19618062)
	1112-1305, gnl\|Mm7\|chr11 (61857396-61857211)

	fcc (0.593354)
	hyp (0.42851)
	ill (0.351185)
	fce (0.271592)
	nlu (0.191681)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	pty (0.142714)
	nmm (0.132802)
	eep (0.122564)
	eru (0.120048)
	pgl (0.118483)