Non-Coding RNA Search

Ss1.1-Pig4-TMW8061K20.5

Sequence:


               
               ACCATCTCGGAGGCGGCCTGGCGCGGGCTGGCGGTACACCTTCCTCCCACCTCGGGTCTG
GGGCCTCCCGGGGAAAATCATCAAGAGGGAGACACGAAGAGCGCCGCCCCAGGCGCAGGG
CACGACTCACGGACTGCTTGGCAGGAGGTGTGGCCGCGCCGGGACCATGTCCGCTGAGCC
CGCGAACGGCCCCACCGAGGACCAGGTGGAGATCCTGGAGTACAACTTCAACAAGGTCAA
CCGGCATCCGGACCCCACCACGCTCTGCCTGATCGCGGCCGAGGCTGGCCTGTCCGAGGA
GGAGACCCAGAAATGGTTCAAGCAGCGCCTGGCCCAGTGGCGGCGGTCAGAAGGCCTTCC
CTCAGAGTGCAGATCTGTCACAGACTAAGGGGATGGCAGGCACTGGCTGCTTCCTTCCAC
CAAGACCACCTGCTGCCTCTCTCCTCCACACCACCAAGTGCTTTGGCTTTTTCAATGTAG
TGTTGCATGTTCCACTGTTAGCTGTTCTGCTGTTTAACACAATGTTGCATTGTTAAAATG
TATATAACTAGAAAAGTAACCAAAGGAAGCTGTGGGCAGCTTCTGTGTAAAGCAGTGGCT
TGGCTGGAAAGTGGTGTGGCTTGCATTTCCTTTCTGTTGAATGACAGATGGTGTGAAAAC
CATTGAAGTTTTCTTTTTACCATCACCCTCCTGGTACCAGTTTCCTTTTACCAGCCATTT
TAGAGCAGACAAGGCCTCTGTCTTGAAAAGATAAGATGACCAAGAGGGAGAAACATTTCC
TTCTAATTCTACTCCCCTAAGTCATTTTCCTTATGTTTCATTTAATACATTGCAATGGAG
TGGGAATATAGGGACAGCTGGGTCATTCCGATTCATAAAGCAGGTCCTTGGATTAGAGCT
GCATGAATCTGGAAAACACTCGGGCTGGAAGACCGAAACTCCAGCCAGCAGAAAGTCAAG
TAACTAAGGGGAAAAATTTACAAAAGTCTTGAATTTACCTTATTTAAACGCATTTGTTAA
ATTTATTTTGCTAAACAAAATAAACTGCTTTTTGTCTCTAAAATAATATTCTAAATAAAA
TGTTAACATTTTGTTGAAAATAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCATCTCGGAGGCGGCCTGGCGCGGGCTGGCGGTACACCTTCCTCCCACCTCGGGTCTG
GGGCCTCCCGGGGAAAATCATCAAGAGGGAGACACGAAGAGCGCCGCCCCAGGCGCAGGG
CACGACTCACGGACTGCTTGGCAGGAGGTGTGGCCGCGCCGGGACCATGTCCGCTGAGCC
CGCGAACGGCCCCACCGAGGACCAGGTGGAGATCCTGGAGTACAACTTCAACAAGGTCAA
CCGGCATCCGGACCCCACCACGCTCTGCCTGATCGCGGCCGAGGCTGGCCTGTCCGAGGA
GGAGACCCAGAAATGGTTCAAGCAGCGCCTGGCCCAGTGGCGGCGGTCAGAAGGCCTTCC
CTCAGAGTGCAGATCTGTCACAGACTAAGGGGATGGCAGGCACTGGCTGCTTCCTTCCAC
CAAGACCACCTGCTGCCTCTCTCCTCCACACCACCAAGTGCTTTGGCTTTTTCAATGTAG
TGTTGCATGTTCCACTGTTAGCTGTTCTGCTGTTTAACACAATGTTGCATTGTTAAAATG
TATATAACTAGAAAAGTAACCAAAGGAAGCTGTGGGCAGCTTCTGTGTAAAGCAGTGGCT
TGGCTGGAAAGTGGTGTGGCTTGCATTTCCTTTCTGTTGAATGACAGATGGTGTGAAAAC
CATTGAAGTTTTCTTTTTACCATCACCCTCCTGGTACCAGTTTCCTTTTACCAGCCATTT
TAGAGCAGACAAGGCCTCTGTCTTGAAAAGATAAGATGACCAAGAGGGAGAAACATTTCC
TTCTAATTCTACTCCCCTAAGTCATTTTCCTTATGTTTCATTTAATACATTGCAATGGAG
TGGGAATATAGGGACAGCTGGGTCATTCCGATTCATAAAGCAGGTCCTTGGATTAGAGCT
GCATGAATCTGGAAAACACTCGGGCTGGAAGACCGAAACTCCAGCCAGCAGAAAGTCAAG
TAACTAAGGGGAAAAATTTACAAAAGTCTTGAATTTACCTTATTTAAACGCATTTGTTAA
ATTTATTTTGCTAAACAAAATAAACTGCTTTTTGTCTCTAAAATAATATTCTAAATAAAA
TGTTAACATTTTGTTGAAAATAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47523256|ref|NP_998957.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47523256|ref|NP_998957.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               561-711, + strand, RNAz p=0.867428

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               561-711, + strand, RNAz p=0.867428

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032495, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032495, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               307-556, gnl|bosTau2|chr6 (38565195-38565446)
               

               
               307-556, gnl|Hg17|chr4 (57355895-57355643)
               

               
               307-556, gnl|Mm7|chr5 (77019396-77019150)
               


               
               561-1101, gnl|bosTau2|chr6 (38565475-38566010)
               

               
               561-1101, gnl|Hg17|chr4 (57355633-57355089)
               

               
               561-1101, gnl|Mm7|chr5 (77019135-77018563)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               307-556, gnl|bosTau2|chr6 (38565195-38565446)
               

               
               307-556, gnl|Hg17|chr4 (57355895-57355643)
               

               
               307-556, gnl|Mm7|chr5 (77019396-77019150)
               


               
               561-1101, gnl|bosTau2|chr6 (38565475-38566010)
               

               
               561-1101, gnl|Hg17|chr4 (57355633-57355089)
               

               
               561-1101, gnl|Mm7|chr5 (77019135-77018563)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               nlu (2.87522)
               

               
               pgl (0.829384)
               

               
               lun (0.752445)
               

               
               nep (0.7357)
               

               
               ton (0.702001)
               

               
               ret (0.643666)
               

               
               liv (0.585137)
               

               
               spc (0.453463)
               

               
               spl (0.429553)
               

               
               fcc (0.39557)
               

               
               ova (0.387397)
               

               
               cbl (0.344392)
               

               
               hyp (0.285673)
               

               
               cbr (0.255951)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (2.87522)
               

               
               pgl (0.829384)
               

               
               lun (0.752445)
               

               
               nep (0.7357)
               

               
               ton (0.702001)
               

               
               ret (0.643666)
               

               
               liv (0.585137)
               

               
               spc (0.453463)
               

               
               spl (0.429553)
               

               
               fcc (0.39557)
               

               
               ova (0.387397)
               

               
               cbl (0.344392)
               

               
               hyp (0.285673)
               

               
               cbr (0.255951)
               

               
               ebs (0.236602)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               cag (0.151194)
               

               
               ski (0.146735)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	307-556, gnl\|bosTau2\|chr6 (38565195-38565446)
	307-556, gnl\|Hg17\|chr4 (57355895-57355643)
	307-556, gnl\|Mm7\|chr5 (77019396-77019150)

	561-1101, gnl\|bosTau2\|chr6 (38565475-38566010)
	561-1101, gnl\|Hg17\|chr4 (57355633-57355089)
	561-1101, gnl\|Mm7\|chr5 (77019135-77018563)

	nlu (2.87522)
	pgl (0.829384)
	lun (0.752445)
	nep (0.7357)
	ton (0.702001)
	ret (0.643666)
	liv (0.585137)
	spc (0.453463)
	spl (0.429553)
	fcc (0.39557)
	ova (0.387397)
	cbl (0.344392)
	hyp (0.285673)
	cbr (0.255951)
	ebs (0.236602)
	tes (0.207814)
	cmu (0.186393)
	fhi (0.169578)
	mga (0.160205)
	cag (0.151194)
	ski (0.146735)
	csk (0.140746)
	nca (0.136874)
	eep (0.122564)
	jca (0.11396)
	cty (0.10408)