Non-Coding RNA Search

Ss1.1-Pig4-TMW8061L01.5

Sequence:


               
               CGGCTGCTGGCGGCCCTGCTGCACAGCCCTCAGCTGGTGGAGCGTCTCTCCGAATCGCGG
CCTATCCGGCGTGCGGCGCAGCTCACCGCCTTCGCACTGCTGCAGGCCCAGCTGCGTGGC
CAGGACGCGGCCCGACGCATTCGCGCCCTCGCGGCTGGGCCCGCGGGTTCCCTGGGTCGC
CGCGCTGCGCGCTTCAAAGACACCTTCACTCAGGAGCTACGCCGCGGCCTCCGGGAGCGC
CCGCGGCCACCACCAGGTAGTCAGAAGGGCCCAGGAGCAAACCCCTAAACCCACGCTGTG
CCGGGCCGAGGTGGCCTGTTAGACTTTCTGAGCTCCACACTGGCCTTGGCGCTAAGGAGT
CATCCTGGACACCATGCACAGCTCCGAATCCTAAGACCGTCCGCTTCCTCAGGTCCCACT
CATCAAAGGGCCCAGGCCAAACCGACAGCCCTGGTGAAGCCCTCTGTTTGGATAGGACAC
AGTGTATGAAGAAAGCACTGGAAGCCTGACAGAAAGCAAGACAGACACTGCCCTGATGTA
CCACGGGCAGAGAGCCATGGACCAGAGTACAGCGGGAAAGACAATCTGCCCTCAGCGAAG
AGGACGAAAACGTAAAACGATACTGCTGCCTCCTCACTGCTCTAGCAGGGCACCACTCCC
AGGGGAGATCCTGGATGGAAGACAGTCCTGCAGTTGCCAAACTCCTCTGATTAAATATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTGCTGGCGGCCCTGCTGCACAGCCCTCAGCTGGTGGAGCGTCTCTCCGAATCGCGG
CCTATCCGGCGTGCGGCGCAGCTCACCGCCTTCGCACTGCTGCAGGCCCAGCTGCGTGGC
CAGGACGCGGCCCGACGCATTCGCGCCCTCGCGGCTGGGCCCGCGGGTTCCCTGGGTCGC
CGCGCTGCGCGCTTCAAAGACACCTTCACTCAGGAGCTACGCCGCGGCCTCCGGGAGCGC
CCGCGGCCACCACCAGGTAGTCAGAAGGGCCCAGGAGCAAACCCCTAAACCCACGCTGTG
CCGGGCCGAGGTGGCCTGTTAGACTTTCTGAGCTCCACACTGGCCTTGGCGCTAAGGAGT
CATCCTGGACACCATGCACAGCTCCGAATCCTAAGACCGTCCGCTTCCTCAGGTCCCACT
CATCAAAGGGCCCAGGCCAAACCGACAGCCCTGGTGAAGCCCTCTGTTTGGATAGGACAC
AGTGTATGAAGAAAGCACTGGAAGCCTGACAGAAAGCAAGACAGACACTGCCCTGATGTA
CCACGGGCAGAGAGCCATGGACCAGAGTACAGCGGGAAAGACAATCTGCCCTCAGCGAAG
AGGACGAAAACGTAAAACGATACTGCTGCCTCCTCACTGCTCTAGCAGGGCACCACTCCC
AGGGGAGATCCTGGATGGAAGACAGTCCTGCAGTTGCCAAACTCCTCTGATTAAATATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6P6A7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6P6A7_HUMAN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-305, gnl|bosTau2|chr1 (42927107-42926803)
               

               
               1-305, gnl|Hg17|chr3 (198157910-198158214)
               

               
               1-305, gnl|Mm7|chr16 (31622961-31622610)
               


               
               444-720, gnl|bosTau2|chr1 (42926802-42926528)
               

               
               444-720, gnl|Hg17|chr3 (198158323-198158619)
               

               
               444-720, gnl|Mm7|chr16 (31622609-31622303)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-305, gnl|bosTau2|chr1 (42927107-42926803)
               

               
               1-305, gnl|Hg17|chr3 (198157910-198158214)
               

               
               1-305, gnl|Mm7|chr16 (31622961-31622610)
               


               
               444-720, gnl|bosTau2|chr1 (42926802-42926528)
               

               
               444-720, gnl|Hg17|chr3 (198158323-198158619)
               

               
               444-720, gnl|Mm7|chr16 (31622609-31622303)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ton (0.1755)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ese (0.126502)

	1-305, gnl\|bosTau2\|chr1 (42927107-42926803)
	1-305, gnl\|Hg17\|chr3 (198157910-198158214)
	1-305, gnl\|Mm7\|chr16 (31622961-31622610)

	444-720, gnl\|bosTau2\|chr1 (42926802-42926528)
	444-720, gnl\|Hg17\|chr3 (198158323-198158619)
	444-720, gnl\|Mm7\|chr16 (31622609-31622303)

	ton (0.1755)
	cag (0.151194)
	hyp (0.142837)
	lnt (0.142308)
	ese (0.126502)