Ss1.1-Pig4-TMW8061L12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAGGTCGGCGGTTCCGGCGCTGTGGCTGGAGCGGTAGGGCGAGAGCCGCTGGAAAGCTG CAGATACTGTGACTCAGACGGACCATGGCAGACCAGGCAAAGCCCATTAGCCCTCTCAAG AATCTGCTGGCCGGCGGCTTTGGAGGCATGTGCCTGGTGTTCGTGGGGCATCCGCTGGAC ACGGTCAAGGTCCGACTGCAGACACAACCCCCCAGTTTGCCTGGACAACCTCCTATGTAT TCTGGGACCTTTGACTGTTTCCGGAAGACTCTTATGAGAGAGGGTGTCAGGGGGCTATAT AAGGGCATGGCCGCTCCCATCATTGGGGTCACCCCCATGTTTGCTGTGTGTTTCTTTGGG TTTGGATTGGGGAAGAAACTGCAACAGAAACACCCAGAGGATGTGCTCAGCTACCCCCAA ATATTTGCAGCTGGGATGTTATCTGGTGTATTCACTACGGGAATTATGACCCCTGGAGAA CGGGTCAAGTGCTTGTTACAGATTCAGGCTTCTTCAGGGGAAACCAAGTACAATGGTGCC TTGGACTGTGCAAAGAAGTTATACCGGGAGTCTGGAATTCGAGGCATCTACAAAGGGACT GTGCTTACCCTCATGAGAGATGTTCCAGCCAGTGGGATGTATTTCATGACATATGAGTGG CTGAAAAATACCCTCACTCCAGAAGGAAAGAGTGTCAGTGAGCTCAGCGTGCCTCGGATC CTGTTGGCTGGAGGCATCGCAGGGATCTTCAACTGGGCTGTGGCAATCCCCCCAGATGTG CTCAAGTCCCGCTTCCAGACTGCACCTCCTGGGAAATATCCTAATGGTTTCAGAGATGTG TTGAAGGAGCTGATCAGGAATGAAGGAATCACATCTTTGTATAAGGGGTTCAATGCAGTG ATGATCCGAGCCTTCCCAGCCAATGCAGCCTGTTTCCTTGGCTTTGAAGTCGCCATGAAG TTCCTTAATTGGATCACGCCCAACTTGTGAGGCCGAAGTCTGCTCAAGTCTTCAAGATGC TGGAAGCTGTCATCAAGGAGGAATAGTGGGCAGGACTGGGCCATCCTGAAGGACGTGGGG GAGGGATGGTGGGATGAGAGCTCTGTGCATGGACTTGTTGAGATCACTGCCTTAATGACA ATGTCTCCCTGGTATAATTTGCCATTTTGAAACTTGAATTCACTCTTCTCAATTTAAGGG ATCTCACGGAGATTTGGAGATGGAGTAAGTAGCTTCTGGGCCAAATACCACGTGTGGCCG GTGTTGACTACTGGCCCTACTACACAAAAAATACTCCTCGAGGAAGAGGGAATCTCACCC TCTCATTGGAAACACTATGCATGTTTTCAACCAGCTGACCAGGAGCTAGGGGCTTCTTTG ATCCCTAGCCAGGAACACTCACCAGATTTCCAAGGTATCATTTAATCCTGGCCTGCACAT GGGAATGTGGACTTGAGGCCCACATCTGCCTGTCCAAGTGGACTGAGCAAATGTGCCTAG GGGGAGATAGCCTGTTAACAGTCAGGTGGTTTTTTTAATGCATGCAAATAATCAAAATTA AAACTCGAGTAGCCTAATTTCCCAGGAGTAGGTAGAGAGCTTTCCCTCCAACACAGTGAG GAGTTTTGAATCAACAGTCCCAGCTTGCTAGGATAAGTGAGAAAGCCAGGGTGTAGGGAG GCTCCTTTTGCACACTCTTCTCATGAGAGCACCCTATTTTAACAGGAAACAATAAATATG TTTTCTAATTTTAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAGGTCGGCGGTTCCGGCGCTGTGGCTGGAGCGGTAGGGCGAGAGCCGCTGGAAAGCTG CAGATACTGTGACTCAGACGGACCATGGCAGACCAGGCAAAGCCCATTAGCCCTCTCAAG AATCTGCTGGCCGGCGGCTTTGGAGGCATGTGCCTGGTGTTCGTGGGGCATCCGCTGGAC ACGGTCAAGGTCCGACTGCAGACACAACCCCCCAGTTTGCCTGGACAACCTCCTATGTAT TCTGGGACCTTTGACTGTTTCCGGAAGACTCTTATGAGAGAGGGTGTCAGGGGGCTATAT AAGGGCATGGCCGCTCCCATCATTGGGGTCACCCCCATGTTTGCTGTGTGTTTCTTTGGG TTTGGATTGGGGAAGAAACTGCAACAGAAACACCCAGAGGATGTGCTCAGCTACCCCCAA ATATTTGCAGCTGGGATGTTATCTGGTGTATTCACTACGGGAATTATGACCCCTGGAGAA CGGGTCAAGTGCTTGTTACAGATTCAGGCTTCTTCAGGGGAAACCAAGTACAATGGTGCC TTGGACTGTGCAAAGAAGTTATACCGGGAGTCTGGAATTCGAGGCATCTACAAAGGGACT GTGCTTACCCTCATGAGAGATGTTCCAGCCAGTGGGATGTATTTCATGACATATGAGTGG CTGAAAAATACCCTCACTCCAGAAGGAAAGAGTGTCAGTGAGCTCAGCGTGCCTCGGATC CTGTTGGCTGGAGGCATCGCAGGGATCTTCAACTGGGCTGTGGCAATCCCCCCAGATGTG CTCAAGTCCCGCTTCCAGACTGCACCTCCTGGGAAATATCCTAATGGTTTCAGAGATGTG TTGAAGGAGCTGATCAGGAATGAAGGAATCACATCTTTGTATAAGGGGTTCAATGCAGTG ATGATCCGAGCCTTCCCAGCCAATGCAGCCTGTTTCCTTGGCTTTGAAGTCGCCATGAAG TTCCTTAATTGGATCACGCCCAACTTGTGAGGCCGAAGTCTGCTCAAGTCTTCAAGATGC TGGAAGCTGTCATCAAGGAGGAATAGTGGGCAGGACTGGGCCATCCTGAAGGACGTGGGG GAGGGATGGTGGGATGAGAGCTCTGTGCATGGACTTGTTGAGATCACTGCCTTAATGACA ATGTCTCCCTGGTATAATTTGCCATTTTGAAACTTGAATTCACTCTTCTCAATTTAAGGG ATCTCACGGAGATTTGGAGATGGAGTAAGTAGCTTCTGGGCCAAATACCACGTGTGGCCG GTGTTGACTACTGGCCCTACTACACAAAAAATACTCCTCGAGGAAGAGGGAATCTCACCC TCTCATTGGAAACACTATGCATGTTTTCAACCAGCTGACCAGGAGCTAGGGGCTTCTTTG ATCCCTAGCCAGGAACACTCACCAGATTTCCAAGGTATCATTTAATCCTGGCCTGCACAT GGGAATGTGGACTTGAGGCCCACATCTGCCTGTCCAAGTGGACTGAGCAAATGTGCCTAG GGGGAGATAGCCTGTTAACAGTCAGGTGGTTTTTTTAATGCATGCAAATAATCAAAATTA AAACTCGAGTAGCCTAATTTCCCAGGAGTAGGTAGAGAGCTTTCCCTCCAACACAGTGAG GAGTTTTGAATCAACAGTCCCAGCTTGCTAGGATAAGTGAGAAAGCCAGGGTGTAGGGAG GCTCCTTTTGCACACTCTTCTCATGAGAGCACCCTATTTTAACAGGAAACAATAAATATG TTTTCTAATTTTAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | More info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
| Predicted RNA structure(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_000387, - | |
| 5' of NM_000387, + |
| Aligned organism(s): 82 entry(ies) | More info |
| Aligned organism(s): 82 entry(ies) | Help | Less info |
| 1-195, gnl|bosTau2|chr22 (39941767-39941571) | |
| 1-195, gnl|Hg17|chr3 (48911318-48911122) | |
| 1-195, gnl|Mm7|chr9 (108374658-108374849) | |
| 281-410, gnl|bosTau2|chr22 (39929175-39929046) | |
| 281-410, gnl|Hg17|chr3 (48896563-48896434) | |
| 281-410, gnl|Mm7|chr9 (108385327-108385456) | |
| 499-619, gnl|bosTau2|chr22 (39322977-39322857) | |
| 499-619, gnl|canFam2|chr20 (43267140-43267012) | |
| 499-619, gnl|canFam2|chr20 (43267020-43267134) | |
| 499-619, gnl|dasNov1|scaffold_65988 (970-842) | |
| 499-619, gnl|dasNov1|scaffold_65988 (850-964) | |
| 499-619, gnl|echTel1|scaffold_276719 (12298-12225) | |
| 499-619, gnl|echTel1|scaffold_276719 (12225-12292) | |
| 499-619, gnl|fr1|chrUn (163805665-163805543) | |
| 499-619, gnl|fr1|chrUn (163805543-163805659) | |
| 499-619, gnl|galGal2|chr12 (11679571-11679443) | |
| 499-619, gnl|hg17|chr3 (48874976-48875104) | |
| 499-619, gnl|Hg17|chr3 (48875099-48874979) | |
| 499-619, gnl|hg17|chr6 (52219631-52219747) | |
| 499-619, gnl|loxAfr1|scaffold_17572 (23458-23364) | |
| 499-619, gnl|loxAfr1|scaffold_17572 (23364-23452) | |
| 499-619, gnl|mm7|chr9 (108393120-108392992) | |
| 499-619, gnl|mm7|chr9 (108393000-108393114) | |
| 499-619, gnl|Mm7|chr9 (108392995-108393115) | |
| 499-619, gnl|monDom2|scaffold_17 (12080431-12080315) | |
| 499-619, gnl|monDom2|scaffold_5 (76662430-76662302) | |
| 499-619, gnl|oryCun1|scaffold_185625 (17009-17137) | |
| 499-619, gnl|oryCun1|scaffold_185625 (17131-17015) | |
| 499-619, gnl|panTro1|chr2 (50368455-50368583) | |
| 499-619, gnl|panTro1|chr5 (53235419-53235535) | |
| 499-619, gnl|rheMac2|chr2 (87603696-87603568) | |
| 499-619, gnl|rheMac2|chr4 (51907982-51908098) | |
| 499-619, gnl|rn3|chr8 (113751061-113750933) | |
| 499-619, gnl|rn3|chr8 (113750941-113751055) | |
| 499-619, gnl|tetNig1|chr11 (5729068-5728944) | |
| 499-619, gnl|tetNig1|chr11 (5728946-5729062) | |
| 691-802, gnl|bosTau2|chr22 (39321646-39321535) | |
| 691-802, gnl|canFam2|chr20 (43268381-43268256) | |
| 691-802, gnl|canFam2|chr20 (43268261-43268367) | |
| 691-802, gnl|danRer3|chrNA (129626757-129626870) | |
| 691-802, gnl|danRer3|chrNA (129626865-129626760) | |
| 691-802, gnl|dasNov1|scaffold_65988 (2102-1977) | |
| 691-802, gnl|dasNov1|scaffold_65988 (1982-2088) | |
| 691-802, gnl|echTel1|scaffold_276719 (13574-13449) | |
| 691-802, gnl|echTel1|scaffold_276719 (13454-13560) | |
| 691-802, gnl|fr1|chrUn (163806002-163805882) | |
| 691-802, gnl|fr1|chrUn (163805887-163805992) | |
| 691-802, gnl|galGal2|chr12 (11681436-11681311) | |
| 691-802, gnl|hg17|chr3 (48871518-48871643) | |
| 691-802, gnl|Hg17|chr3 (48871640-48871529) | |
| 691-802, gnl|hg17|chr6 (52219824-52219930) | |
| 691-802, gnl|loxAfr1|scaffold_17572 (25368-25243) | |
| 691-802, gnl|loxAfr1|scaffold_17572 (25248-25354) | |
| 691-802, gnl|mm7|chr9 (108395378-108395255) | |
| 691-802, gnl|mm7|chr9 (108395260-108395366) | |
| 691-802, gnl|Mm7|chr9 (108395256-108395367) | |
| 691-802, gnl|monDom2|scaffold_17 (12080240-12080144) | |
| 691-802, gnl|monDom2|scaffold_5 (76665863-76665735) | |
| 691-802, gnl|oryCun1|scaffold_185625 (15427-15552) | |
| 691-802, gnl|oryCun1|scaffold_185625 (15547-15441) | |
| 691-802, gnl|panTro1|chr2 (50364986-50365111) | |
| 691-802, gnl|panTro1|chr5 (53235612-53235718) | |
| 691-802, gnl|rheMac2|chr2 (87607172-87607047) | |
| 691-802, gnl|rheMac2|chr4 (51908175-51908286) | |
| 691-802, gnl|rn3|chr8 (113753252-113753129) | |
| 691-802, gnl|rn3|chr8 (113753134-113753240) | |
| 691-802, gnl|tetNig1|chr11 (5729399-5729284) | |
| 691-802, gnl|tetNig1|chr11 (5729289-5729394) | |
| 911-1752, gnl|bosTau2|chr22 (39320410-39319529) | |
| 911-1752, gnl|canFam2|chr20 (43270330-43269554) | |
| 911-1752, gnl|dasNov1|scaffold_65988 (4121-3343) | |
| 911-1752, gnl|echTel1|scaffold_276719 (15942-15226) | |
| 911-1752, gnl|hg17|chr3 (48869299-48870071) | |
| 911-1752, gnl|Hg17|chr3 (48870228-48869364) | |
| 911-1752, gnl|loxAfr1|scaffold_17572 (27195-26448) | |
| 911-1752, gnl|mm7|chr9 (108397617-108396873) | |
| 911-1752, gnl|Mm7|chr9 (108396724-108397552) | |
| 911-1752, gnl|monDom2|scaffold_5 (76670018-76669223) | |
| 911-1752, gnl|oryCun1|scaffold_185625 (12842-13674) | |
| 911-1752, gnl|panTro1|chr2 (50362734-50363516) | |
| 911-1752, gnl|rheMac2|chr2 (87609383-87608609) | |
| 911-1752, gnl|rn3|chr8 (113756581-113755839) |
| Aligned organism(s): 82 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-195, gnl|bosTau2|chr22 (39941767-39941571) | |
| 1-195, gnl|Hg17|chr3 (48911318-48911122) | |
| 1-195, gnl|Mm7|chr9 (108374658-108374849) | |
| 281-410, gnl|bosTau2|chr22 (39929175-39929046) | |
| 281-410, gnl|Hg17|chr3 (48896563-48896434) | |
| 281-410, gnl|Mm7|chr9 (108385327-108385456) | |
| 499-619, gnl|bosTau2|chr22 (39322977-39322857) | |
| 499-619, gnl|canFam2|chr20 (43267140-43267012) | |
| 499-619, gnl|canFam2|chr20 (43267020-43267134) | |
| 499-619, gnl|dasNov1|scaffold_65988 (970-842) | |
| 499-619, gnl|dasNov1|scaffold_65988 (850-964) | |
| 499-619, gnl|echTel1|scaffold_276719 (12298-12225) | |
| 499-619, gnl|echTel1|scaffold_276719 (12225-12292) | |
| 499-619, gnl|fr1|chrUn (163805665-163805543) | |
| 499-619, gnl|fr1|chrUn (163805543-163805659) | |
| 499-619, gnl|galGal2|chr12 (11679571-11679443) | |
| 499-619, gnl|hg17|chr3 (48874976-48875104) | |
| 499-619, gnl|Hg17|chr3 (48875099-48874979) | |
| 499-619, gnl|hg17|chr6 (52219631-52219747) | |
| 499-619, gnl|loxAfr1|scaffold_17572 (23458-23364) | |
| 499-619, gnl|loxAfr1|scaffold_17572 (23364-23452) | |
| 499-619, gnl|mm7|chr9 (108393120-108392992) | |
| 499-619, gnl|mm7|chr9 (108393000-108393114) | |
| 499-619, gnl|Mm7|chr9 (108392995-108393115) | |
| 499-619, gnl|monDom2|scaffold_17 (12080431-12080315) | |
| 499-619, gnl|monDom2|scaffold_5 (76662430-76662302) | |
| 499-619, gnl|oryCun1|scaffold_185625 (17009-17137) | |
| 499-619, gnl|oryCun1|scaffold_185625 (17131-17015) | |
| 499-619, gnl|panTro1|chr2 (50368455-50368583) | |
| 499-619, gnl|panTro1|chr5 (53235419-53235535) | |
| 499-619, gnl|rheMac2|chr2 (87603696-87603568) | |
| 499-619, gnl|rheMac2|chr4 (51907982-51908098) | |
| 499-619, gnl|rn3|chr8 (113751061-113750933) | |
| 499-619, gnl|rn3|chr8 (113750941-113751055) | |
| 499-619, gnl|tetNig1|chr11 (5729068-5728944) | |
| 499-619, gnl|tetNig1|chr11 (5728946-5729062) | |
| 691-802, gnl|bosTau2|chr22 (39321646-39321535) | |
| 691-802, gnl|canFam2|chr20 (43268381-43268256) | |
| 691-802, gnl|canFam2|chr20 (43268261-43268367) | |
| 691-802, gnl|danRer3|chrNA (129626757-129626870) | |
| 691-802, gnl|danRer3|chrNA (129626865-129626760) | |
| 691-802, gnl|dasNov1|scaffold_65988 (2102-1977) | |
| 691-802, gnl|dasNov1|scaffold_65988 (1982-2088) | |
| 691-802, gnl|echTel1|scaffold_276719 (13574-13449) | |
| 691-802, gnl|echTel1|scaffold_276719 (13454-13560) | |
| 691-802, gnl|fr1|chrUn (163806002-163805882) | |
| 691-802, gnl|fr1|chrUn (163805887-163805992) | |
| 691-802, gnl|galGal2|chr12 (11681436-11681311) | |
| 691-802, gnl|hg17|chr3 (48871518-48871643) | |
| 691-802, gnl|Hg17|chr3 (48871640-48871529) | |
| 691-802, gnl|hg17|chr6 (52219824-52219930) | |
| 691-802, gnl|loxAfr1|scaffold_17572 (25368-25243) | |
| 691-802, gnl|loxAfr1|scaffold_17572 (25248-25354) | |
| 691-802, gnl|mm7|chr9 (108395378-108395255) | |
| 691-802, gnl|mm7|chr9 (108395260-108395366) | |
| 691-802, gnl|Mm7|chr9 (108395256-108395367) | |
| 691-802, gnl|monDom2|scaffold_17 (12080240-12080144) | |
| 691-802, gnl|monDom2|scaffold_5 (76665863-76665735) | |
| 691-802, gnl|oryCun1|scaffold_185625 (15427-15552) | |
| 691-802, gnl|oryCun1|scaffold_185625 (15547-15441) | |
| 691-802, gnl|panTro1|chr2 (50364986-50365111) | |
| 691-802, gnl|panTro1|chr5 (53235612-53235718) | |
| 691-802, gnl|rheMac2|chr2 (87607172-87607047) | |
| 691-802, gnl|rheMac2|chr4 (51908175-51908286) | |
| 691-802, gnl|rn3|chr8 (113753252-113753129) | |
| 691-802, gnl|rn3|chr8 (113753134-113753240) | |
| 691-802, gnl|tetNig1|chr11 (5729399-5729284) | |
| 691-802, gnl|tetNig1|chr11 (5729289-5729394) | |
| 911-1752, gnl|bosTau2|chr22 (39320410-39319529) | |
| 911-1752, gnl|canFam2|chr20 (43270330-43269554) | |
| 911-1752, gnl|dasNov1|scaffold_65988 (4121-3343) | |
| 911-1752, gnl|echTel1|scaffold_276719 (15942-15226) | |
| 911-1752, gnl|hg17|chr3 (48869299-48870071) | |
| 911-1752, gnl|Hg17|chr3 (48870228-48869364) | |
| 911-1752, gnl|loxAfr1|scaffold_17572 (27195-26448) | |
| 911-1752, gnl|mm7|chr9 (108397617-108396873) | |
| 911-1752, gnl|Mm7|chr9 (108396724-108397552) | |
| 911-1752, gnl|monDom2|scaffold_5 (76670018-76669223) | |
| 911-1752, gnl|oryCun1|scaffold_185625 (12842-13674) | |
| 911-1752, gnl|panTro1|chr2 (50362734-50363516) | |
| 911-1752, gnl|rheMac2|chr2 (87609383-87608609) | |
| 911-1752, gnl|rn3|chr8 (113756581-113755839) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| ssp (0.542079) | |
| cki (0.495704) | |
| cst (0.420109) | |
| che (0.408942) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| cje (0.330469) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| sug (0.254582) | |
| eep (0.245128) | |
| nms (0.213858) | |
| col (0.195008) | |
| nep (0.183925) | |
| sin (0.174948) | |
| cut (0.169924) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nca (0.136874) | |
| cov (0.132153) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.542079) | |
| cki (0.495704) | |
| cst (0.420109) | |
| che (0.408942) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| cje (0.330469) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| sug (0.254582) | |
| eep (0.245128) | |
| nms (0.213858) | |
| col (0.195008) | |
| nep (0.183925) | |
| sin (0.174948) | |
| cut (0.169924) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nca (0.136874) | |
| cov (0.132153) | |
| bla (0.124347) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| eje (0.0988338) |