Ss1.1-Pig4-TMW8061L18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCTTAGCAGGTGCGGCACAACTTGTGCGGTCTCGTCCGAGCCCTTCGGTCCCAGCCGAA CCAGTGCCCGGCGGGTTCGTAGAGAGGAAAGGTGTGCTCTGCTGTCCCGATGAACCCAGG GAATCCTCCTCCGTATCCAGGCCCTGGTCCGTCGGCCCCGTACCCACCTTATCCACAACA ACCCATGGGGCCGCAGGTCTACCCTCCAGGACCTGCGGGGGGGCCCTACCCACCACCTCC TCAGGGGTACCCCTACCAGGGCTACCCCCAGTACGGCTGGCAGGGCGGACCTCAGGAGCC TCCTAAAACCACAGTGTATGTGGTGGAAGACCAAAGGAGGGATGACCTGGGCCCCTCCAC CTGCCTCACAGCCTGCTGGACGGCCCTCTGCTGCTGCTGCCTCTGGGACATGCTCACCTG ACCAGCCCGGCTCTCCTGTCCCGCCAGCTCTGCCGCCACCGCCGCCAGGTGTGCCTGCCC CCATCTCTTCCGACGGCTGAAATCAACGACTAGCTCTGCAGAGACACGTCTACCTTCACC ACAGTGGGATTCTAGATTAGCACGGGTTGCTGCTGGGTAATTCAGTGACTTGATCTTTTT AATACTCAAAATCCATTTCTTGTTGGCCTTTCACAAATGTGCTAAATGACTTTTATTTTT TTGGCCAAAGCCTTCGTTATATTTATAATTTAAAAATTATACATTCAAGGTAGTGTGGCA TGATGTAATACACCACGGAATGATTTCTCTGCTAACACCCTGTATGTTTCAATAAATTTG TCTACACCTCAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCTTAGCAGGTGCGGCACAACTTGTGCGGTCTCGTCCGAGCCCTTCGGTCCCAGCCGAA CCAGTGCCCGGCGGGTTCGTAGAGAGGAAAGGTGTGCTCTGCTGTCCCGATGAACCCAGG GAATCCTCCTCCGTATCCAGGCCCTGGTCCGTCGGCCCCGTACCCACCTTATCCACAACA ACCCATGGGGCCGCAGGTCTACCCTCCAGGACCTGCGGGGGGGCCCTACCCACCACCTCC TCAGGGGTACCCCTACCAGGGCTACCCCCAGTACGGCTGGCAGGGCGGACCTCAGGAGCC TCCTAAAACCACAGTGTATGTGGTGGAAGACCAAAGGAGGGATGACCTGGGCCCCTCCAC CTGCCTCACAGCCTGCTGGACGGCCCTCTGCTGCTGCTGCCTCTGGGACATGCTCACCTG ACCAGCCCGGCTCTCCTGTCCCGCCAGCTCTGCCGCCACCGCCGCCAGGTGTGCCTGCCC CCATCTCTTCCGACGGCTGAAATCAACGACTAGCTCTGCAGAGACACGTCTACCTTCACC ACAGTGGGATTCTAGATTAGCACGGGTTGCTGCTGGGTAATTCAGTGACTTGATCTTTTT AATACTCAAAATCCATTTCTTGTTGGCCTTTCACAAATGTGCTAAATGACTTTTATTTTT TTGGCCAAAGCCTTCGTTATATTTATAATTTAAAAATTATACATTCAAGGTAGTGTGGCA TGATGTAATACACCACGGAATGATTTCTCTGCTAACACCCTGTATGTTTCAATAAATTTG TCTACACCTCAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 127-326, - strand, RNAz p=0.999679 | |
| 128-326, - strand, RNAz p=0.978454 | |
| 228-326, - strand, RNAz p=0.971333 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 127-326, - strand, RNAz p=0.999679 | |
| 128-326, - strand, RNAz p=0.978454 | |
| 228-326, - strand, RNAz p=0.971333 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 225-296, - strand, RNAmicro p=0.974009 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 127-326, BP444351 full-length enriched swine cDNA library, adult liver Sus (dbj|BP444351.1|), blast E-value=0, identity=96.5% | |
| 127-326, CJ002626 full-length enriched swine cDNA library, adult liver Sus (dbj|CJ002626.1|), blast E-value=0, identity=96.5% | |
| 127-326, CJ010416 full-length enriched swine cDNA library, adult mesenteric (dbj|CJ010416.1|), blast E-value=0, identity=96.5% | |
| 127-326, DB785619 full-length enriched swine cDNA library, adult adrenal (dbj|DB785619.1|), blast E-value=0, identity=96.5% | |
| 134-326, JHU105F10L781 Canine cardiovascular system biased cDNA Canis (gb|DR106046.1|), blast E-value=7e-35, identity=84.46% | |
| 127-244, POSM0605025_P01R porcine skeletal muscle cDNA library (PoSM) Sus (gb|DV903324.1|), blast E-value=0, identity=94.07% | |
| 128-326, BP444351 full-length enriched swine cDNA library, adult liver Sus (dbj|BP444351.1|), blast E-value=0, identity=96.48% | |
| 128-326, CJ002626 full-length enriched swine cDNA library, adult liver Sus (dbj|CJ002626.1|), blast E-value=0, identity=96.48% | |
| 128-326, CJ010416 full-length enriched swine cDNA library, adult mesenteric (dbj|CJ010416.1|), blast E-value=0, identity=96.48% | |
| 128-326, DB785619 full-length enriched swine cDNA library, adult adrenal (dbj|DB785619.1|), blast E-value=0, identity=96.48% | |
| 134-326, JHU105F10L781 Canine cardiovascular system biased cDNA Canis (gb|DR106046.1|), blast E-value=7e-35, identity=84.46% | |
| 128-244, POSM0605025_P01R porcine skeletal muscle cDNA library (PoSM) Sus (gb|DV903324.1|), blast E-value=1.4013e-45, identity=94.02% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 127-326, BP444351 full-length enriched swine cDNA library, adult liver Sus (dbj|BP444351.1|), blast E-value=0, identity=96.5% | |
| 127-326, CJ002626 full-length enriched swine cDNA library, adult liver Sus (dbj|CJ002626.1|), blast E-value=0, identity=96.5% | |
| 127-326, CJ010416 full-length enriched swine cDNA library, adult mesenteric (dbj|CJ010416.1|), blast E-value=0, identity=96.5% | |
| 127-326, DB785619 full-length enriched swine cDNA library, adult adrenal (dbj|DB785619.1|), blast E-value=0, identity=96.5% | |
| 134-326, JHU105F10L781 Canine cardiovascular system biased cDNA Canis (gb|DR106046.1|), blast E-value=7e-35, identity=84.46% | |
| 127-244, POSM0605025_P01R porcine skeletal muscle cDNA library (PoSM) Sus (gb|DV903324.1|), blast E-value=0, identity=94.07% | |
| 128-326, BP444351 full-length enriched swine cDNA library, adult liver Sus (dbj|BP444351.1|), blast E-value=0, identity=96.48% | |
| 128-326, CJ002626 full-length enriched swine cDNA library, adult liver Sus (dbj|CJ002626.1|), blast E-value=0, identity=96.48% | |
| 128-326, CJ010416 full-length enriched swine cDNA library, adult mesenteric (dbj|CJ010416.1|), blast E-value=0, identity=96.48% | |
| 128-326, DB785619 full-length enriched swine cDNA library, adult adrenal (dbj|DB785619.1|), blast E-value=0, identity=96.48% | |
| 134-326, JHU105F10L781 Canine cardiovascular system biased cDNA Canis (gb|DR106046.1|), blast E-value=7e-35, identity=84.46% | |
| 128-244, POSM0605025_P01R porcine skeletal muscle cDNA library (PoSM) Sus (gb|DV903324.1|), blast E-value=1.4013e-45, identity=94.02% |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 90-326, gnl|bosTau2|chr7 (29464540-29464303) | |
| 90-326, gnl|canFam2|chr15 (30084937-30085128) | |
| 90-326, gnl|canFam2|chr2 (38257989-38258213) | |
| 90-326, gnl|dasNov1|scaffold_10360 (27368-27163) | |
| 90-326, gnl|dasNov1|scaffold_2983 (132630-132840) | |
| 90-326, gnl|echTel1|scaffold_236037 (7009-6790) | |
| 90-326, gnl|echTel1|scaffold_236037 (7009-6787) | |
| 90-326, gnl|hg17|chr5 (173839649-173839864) | |
| 90-326, gnl|hg17|chr5 (139554214-139554423) | |
| 90-326, gnl|Hg17|chr5 (139554213-139554422) | |
| 90-326, gnl|loxAfr1|scaffold_41088 (11978-12185) | |
| 90-326, gnl|loxAfr1|scaffold_7361 (27820-27597) | |
| 90-326, gnl|mm7|chr18 (36742615-36742840) | |
| 90-326, gnl|mm7|chr18 (36742615-36742844) | |
| 90-326, gnl|Mm7|chr18 (36742614-36742845) | |
| 90-326, gnl|monDom2|scaffold_17 (48371874-48371658) | |
| 90-326, gnl|monDom2|scaffold_6 (68616447-68616212) | |
| 90-326, gnl|panTro1|chr4 (181233580-181233794) | |
| 90-326, gnl|panTro1|chr4 (146170675-146170884) | |
| 90-326, gnl|rheMac2|chr6 (170900026-170900233) | |
| 90-326, gnl|rheMac2|chr6 (136612073-136612282) | |
| 90-326, gnl|rn3|chr18 (29028682-29028902) | |
| 90-326, gnl|rn3|chr2 (142596233-142596422) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 90-326, gnl|bosTau2|chr7 (29464540-29464303) | |
| 90-326, gnl|canFam2|chr15 (30084937-30085128) | |
| 90-326, gnl|canFam2|chr2 (38257989-38258213) | |
| 90-326, gnl|dasNov1|scaffold_10360 (27368-27163) | |
| 90-326, gnl|dasNov1|scaffold_2983 (132630-132840) | |
| 90-326, gnl|echTel1|scaffold_236037 (7009-6790) | |
| 90-326, gnl|echTel1|scaffold_236037 (7009-6787) | |
| 90-326, gnl|hg17|chr5 (173839649-173839864) | |
| 90-326, gnl|hg17|chr5 (139554214-139554423) | |
| 90-326, gnl|Hg17|chr5 (139554213-139554422) | |
| 90-326, gnl|loxAfr1|scaffold_41088 (11978-12185) | |
| 90-326, gnl|loxAfr1|scaffold_7361 (27820-27597) | |
| 90-326, gnl|mm7|chr18 (36742615-36742840) | |
| 90-326, gnl|mm7|chr18 (36742615-36742844) | |
| 90-326, gnl|Mm7|chr18 (36742614-36742845) | |
| 90-326, gnl|monDom2|scaffold_17 (48371874-48371658) | |
| 90-326, gnl|monDom2|scaffold_6 (68616447-68616212) | |
| 90-326, gnl|panTro1|chr4 (181233580-181233794) | |
| 90-326, gnl|panTro1|chr4 (146170675-146170884) | |
| 90-326, gnl|rheMac2|chr6 (170900026-170900233) | |
| 90-326, gnl|rheMac2|chr6 (136612073-136612282) | |
| 90-326, gnl|rn3|chr18 (29028682-29028902) | |
| 90-326, gnl|rn3|chr2 (142596233-142596422) |
| Expressed library(ies): 46 entry(ies) | More info |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
| sto (1.43859) | |
| cje (1.32188) | |
| cki (1.15664) | |
| cst (0.980255) | |
| duo (0.864006) | |
| ssp (0.677599) | |
| csp (0.483559) | |
| cbe (0.478469) | |
| pty (0.428143) | |
| che (0.408942) | |
| nmm (0.398406) | |
| jej (0.395687) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| sag (0.36543) | |
| pgl (0.35545) | |
| fhi (0.339155) | |
| nje (0.33184) | |
| nco (0.323468) | |
| pla (0.267344) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| col (0.195008) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lun (0.150489) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ute (0.132784) | |
| kid (0.129735) | |
| cbr (0.127975) | |
| sug (0.127291) | |
| eje (0.0988338) |
| Expressed library(ies): 46 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (1.43859) | |
| cje (1.32188) | |
| cki (1.15664) | |
| cst (0.980255) | |
| duo (0.864006) | |
| ssp (0.677599) | |
| csp (0.483559) | |
| cbe (0.478469) | |
| pty (0.428143) | |
| che (0.408942) | |
| nmm (0.398406) | |
| jej (0.395687) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| sag (0.36543) | |
| pgl (0.35545) | |
| fhi (0.339155) | |
| nje (0.33184) | |
| nco (0.323468) | |
| pla (0.267344) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| col (0.195008) | |
| cmu (0.186393) | |
| nep (0.183925) | |
| mgm (0.180343) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lun (0.150489) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ute (0.132784) | |
| kid (0.129735) | |
| cbr (0.127975) | |
| sug (0.127291) | |
| eje (0.0988338) |