Ss1.1-Pig4-TMW8061L23.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCATTAATGAGCAGAATCCCCAACACCCAGTGGTTCTTGACCTCTTTGAAGACACTACA TGGCTCAGCAAGCAGCGGCCCGGCACCCGAAAGGACCTGCAGGGCCCCAGGATGCAAAAT AGCCATGAAACTATGCAGCCACAACGGGACCACGTGCACCTTCCGGAGCTTTAGCAGCGC CACCCGGGCCGTGACGGAGTGGTACACCCTGCAGGCCACCAACATCTTCTCGCAGGTTCC AAACAAGGAGCTGGTGGCCATGGGTTACCCCGCCGAGAGGATGATCCTGGCTTGTCTGTT CGGGGCGGAGCCCTGCAACCACAGGAACTTCACCCCCATCTTCCACCCGGATTATGGCAA CTGTTACATCTTCAACTGGGGCATGAAGGAGAAGGCCCTCCCTTCAGCCAACCCTGGAGC TGAGTTTGGCCTGAAGTTGATCCTGGACATGGGCCAGAAAGACTACGTGCCCTTCCTCAC GTCCACGGGCGGCGTCCGGCTGATGCTGCACGAGCAGAGGTCCTTCCCCTTCATCAAAGA CGAGGGCATCTACGCCATGTCGGGGACAGAGACGTCCATCGGGGTGCTGGTGGACAAGCT GGAGCGGAAGGGCGAGCCCTACAGCCAGTGCACCATGAATGGTTCCGACGTCCCCATTCA AAACCTCTACAGCAACTACGGTGACTACAACACCACCTATTCCATTCAGGCCTGTATTCG CTCCTGCTTCCAAGAGCACATGATCCGTCACTGCAGCTGTGGCCACTACCTGTACCCGCT GCCCCCCGGGGAGAAATACTGCAACAGCCAGGAGTTCCCAGACTGGGCCTATTGCTACTC AGACCTGCGCATGAGCCTGGCACAGAGGGAGACCTGCATTGACGTCTGCAAGGAGTCCTG CAACGACACCCAGTACAAGATGACCATCTCCATGGCTGACTGGCCTTCTGAGTCCTCCGA GGACTGGATTTTCCATGTCTTGTCTGAGGAGCGGGACCAAAGCACCAACATCACCTTGAG CAGGCAGGGAATTGTCAAGCTCAACATCTACTTCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCATTAATGAGCAGAATCCCCAACACCCAGTGGTTCTTGACCTCTTTGAAGACACTACA TGGCTCAGCAAGCAGCGGCCCGGCACCCGAAAGGACCTGCAGGGCCCCAGGATGCAAAAT AGCCATGAAACTATGCAGCCACAACGGGACCACGTGCACCTTCCGGAGCTTTAGCAGCGC CACCCGGGCCGTGACGGAGTGGTACACCCTGCAGGCCACCAACATCTTCTCGCAGGTTCC AAACAAGGAGCTGGTGGCCATGGGTTACCCCGCCGAGAGGATGATCCTGGCTTGTCTGTT CGGGGCGGAGCCCTGCAACCACAGGAACTTCACCCCCATCTTCCACCCGGATTATGGCAA CTGTTACATCTTCAACTGGGGCATGAAGGAGAAGGCCCTCCCTTCAGCCAACCCTGGAGC TGAGTTTGGCCTGAAGTTGATCCTGGACATGGGCCAGAAAGACTACGTGCCCTTCCTCAC GTCCACGGGCGGCGTCCGGCTGATGCTGCACGAGCAGAGGTCCTTCCCCTTCATCAAAGA CGAGGGCATCTACGCCATGTCGGGGACAGAGACGTCCATCGGGGTGCTGGTGGACAAGCT GGAGCGGAAGGGCGAGCCCTACAGCCAGTGCACCATGAATGGTTCCGACGTCCCCATTCA AAACCTCTACAGCAACTACGGTGACTACAACACCACCTATTCCATTCAGGCCTGTATTCG CTCCTGCTTCCAAGAGCACATGATCCGTCACTGCAGCTGTGGCCACTACCTGTACCCGCT GCCCCCCGGGGAGAAATACTGCAACAGCCAGGAGTTCCCAGACTGGGCCTATTGCTACTC AGACCTGCGCATGAGCCTGGCACAGAGGGAGACCTGCATTGACGTCTGCAAGGAGTCCTG CAACGACACCCAGTACAAGATGACCATCTCCATGGCTGACTGGCCTTCTGAGTCCTCCGA GGACTGGATTTTCCATGTCTTGTCTGAGGAGCGGGACCAAAGCACCAACATCACCTTGAG CAGGCAGGGAATTGTCAAGCTCAACATCTACTTCCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 1-133, gnl|bosTau2|chr25 (19538451-19538585) | |
| 1-133, gnl|canFam2|chr6 (25483799-25483640) | |
| 1-133, gnl|dasNov1|scaffold_17563 (10212-10387) | |
| 1-133, gnl|galGal2|chr14 (8994061-8993881) | |
| 1-133, gnl|hg17|chr16 (23271758-23271932) | |
| 1-133, gnl|Hg17|chr16 (23271765-23271896) | |
| 1-133, gnl|loxAfr1|scaffold_30337 (5095-4923) | |
| 1-133, gnl|mm7|chr7 (117826675-117826827) | |
| 1-133, gnl|Mm7|chr7 (117826682-117826807) | |
| 1-133, gnl|monDom2|scaffold_17 (43738052-43737876) | |
| 1-133, gnl|oryCun1|scaffold_176183 (47500-47324) | |
| 1-133, gnl|panTro1|chr18 (23886280-23886454) | |
| 1-133, gnl|rheMac2|chr20 (21846332-21846506) | |
| 1-133, gnl|rn3|chr1 (180859489-180859653) | |
| 1-133, gnl|xenTro1|scaffold_6 (5192044-5192228) | |
| 134-325, gnl|bosTau2|chr25 (19539597-19539788) | |
| 134-325, gnl|canFam2|chr6 (25481169-25480950) | |
| 134-325, gnl|dasNov1|scaffold_17563 (12326-12544) | |
| 134-325, gnl|echTel1|scaffold_166388 (1115-900) | |
| 134-325, gnl|galGal2|chr14 (8993634-8993429) | |
| 134-325, gnl|hg17|chr16 (23274101-23274320) | |
| 134-325, gnl|Hg17|chr16 (23274121-23274312) | |
| 134-325, gnl|loxAfr1|scaffold_30337 (3292-3073) | |
| 134-325, gnl|mm7|chr7 (117826948-117827164) | |
| 134-325, gnl|Mm7|chr7 (117826965-117827156) | |
| 134-325, gnl|monDom2|scaffold_17 (43731056-43730849) | |
| 134-325, gnl|oryCun1|scaffold_176183 (46396-46177) | |
| 134-325, gnl|panTro1|chr18 (23888625-23888844) | |
| 134-325, gnl|rheMac2|chr20 (21848667-21848886) | |
| 134-325, gnl|rn3|chr1 (180861685-180861902) | |
| 134-325, gnl|xenTro1|scaffold_6 (5194152-5194365) | |
| 428-593, gnl|bosTau2|chr25 (19551500-19551665) | |
| 428-593, gnl|canFam2|chr6 (25470551-25470371) | |
| 428-593, gnl|echTel1|scaffold_248807 (3898-4077) | |
| 428-593, gnl|galGal2|chr14 (8992190-8992012) | |
| 428-593, gnl|hg17|chr16 (23290117-23290297) | |
| 428-593, gnl|Hg17|chr16 (23290120-23290285) | |
| 428-593, gnl|loxAfr1|scaffold_6539 (108075-107894) | |
| 428-593, gnl|mm7|chr7 (117836227-117836407) | |
| 428-593, gnl|Mm7|chr7 (117836230-117836395) | |
| 428-593, gnl|monDom2|scaffold_17 (43717018-43716840) | |
| 428-593, gnl|oryCun1|scaffold_176183 (38266-38087) | |
| 428-593, gnl|panTro1|chr18 (23904519-23904699) | |
| 428-593, gnl|rheMac2|chr20 (21865421-21865601) | |
| 428-593, gnl|rn3|chr1 (180881602-180881782) | |
| 428-593, gnl|xenTro1|scaffold_6 (5210334-5210514) | |
| 707-827, gnl|bosTau2|chr25 (19554483-19554603) | |
| 707-827, gnl|canFam2|chr6 (25467924-25467814) | |
| 707-827, gnl|dasNov1|scaffold_11351 (79223-79106) | |
| 707-827, gnl|echTel1|scaffold_248807 (7581-7691) | |
| 707-827, gnl|galGal2|chr14 (8989893-8989773) | |
| 707-827, gnl|hg17|chr16 (23294545-23294661) | |
| 707-827, gnl|Hg17|chr16 (23294557-23294677) | |
| 707-827, gnl|loxAfr1|scaffold_55910 (10271-10151) | |
| 707-827, gnl|mm7|chr7 (117838469-117838578) | |
| 707-827, gnl|Mm7|chr7 (117838474-117838594) | |
| 707-827, gnl|monDom2|scaffold_17 (43705361-43705245) | |
| 707-827, gnl|oryCun1|scaffold_109647 (17677-17567) | |
| 707-827, gnl|rheMac2|chr20 (21869851-21869967) | |
| 707-827, gnl|rn3|chr1 (180883968-180884077) | |
| 707-827, gnl|xenTro1|scaffold_6 (5215644-5215760) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-133, gnl|bosTau2|chr25 (19538451-19538585) | |
| 1-133, gnl|canFam2|chr6 (25483799-25483640) | |
| 1-133, gnl|dasNov1|scaffold_17563 (10212-10387) | |
| 1-133, gnl|galGal2|chr14 (8994061-8993881) | |
| 1-133, gnl|hg17|chr16 (23271758-23271932) | |
| 1-133, gnl|Hg17|chr16 (23271765-23271896) | |
| 1-133, gnl|loxAfr1|scaffold_30337 (5095-4923) | |
| 1-133, gnl|mm7|chr7 (117826675-117826827) | |
| 1-133, gnl|Mm7|chr7 (117826682-117826807) | |
| 1-133, gnl|monDom2|scaffold_17 (43738052-43737876) | |
| 1-133, gnl|oryCun1|scaffold_176183 (47500-47324) | |
| 1-133, gnl|panTro1|chr18 (23886280-23886454) | |
| 1-133, gnl|rheMac2|chr20 (21846332-21846506) | |
| 1-133, gnl|rn3|chr1 (180859489-180859653) | |
| 1-133, gnl|xenTro1|scaffold_6 (5192044-5192228) | |
| 134-325, gnl|bosTau2|chr25 (19539597-19539788) | |
| 134-325, gnl|canFam2|chr6 (25481169-25480950) | |
| 134-325, gnl|dasNov1|scaffold_17563 (12326-12544) | |
| 134-325, gnl|echTel1|scaffold_166388 (1115-900) | |
| 134-325, gnl|galGal2|chr14 (8993634-8993429) | |
| 134-325, gnl|hg17|chr16 (23274101-23274320) | |
| 134-325, gnl|Hg17|chr16 (23274121-23274312) | |
| 134-325, gnl|loxAfr1|scaffold_30337 (3292-3073) | |
| 134-325, gnl|mm7|chr7 (117826948-117827164) | |
| 134-325, gnl|Mm7|chr7 (117826965-117827156) | |
| 134-325, gnl|monDom2|scaffold_17 (43731056-43730849) | |
| 134-325, gnl|oryCun1|scaffold_176183 (46396-46177) | |
| 134-325, gnl|panTro1|chr18 (23888625-23888844) | |
| 134-325, gnl|rheMac2|chr20 (21848667-21848886) | |
| 134-325, gnl|rn3|chr1 (180861685-180861902) | |
| 134-325, gnl|xenTro1|scaffold_6 (5194152-5194365) | |
| 428-593, gnl|bosTau2|chr25 (19551500-19551665) | |
| 428-593, gnl|canFam2|chr6 (25470551-25470371) | |
| 428-593, gnl|echTel1|scaffold_248807 (3898-4077) | |
| 428-593, gnl|galGal2|chr14 (8992190-8992012) | |
| 428-593, gnl|hg17|chr16 (23290117-23290297) | |
| 428-593, gnl|Hg17|chr16 (23290120-23290285) | |
| 428-593, gnl|loxAfr1|scaffold_6539 (108075-107894) | |
| 428-593, gnl|mm7|chr7 (117836227-117836407) | |
| 428-593, gnl|Mm7|chr7 (117836230-117836395) | |
| 428-593, gnl|monDom2|scaffold_17 (43717018-43716840) | |
| 428-593, gnl|oryCun1|scaffold_176183 (38266-38087) | |
| 428-593, gnl|panTro1|chr18 (23904519-23904699) | |
| 428-593, gnl|rheMac2|chr20 (21865421-21865601) | |
| 428-593, gnl|rn3|chr1 (180881602-180881782) | |
| 428-593, gnl|xenTro1|scaffold_6 (5210334-5210514) | |
| 707-827, gnl|bosTau2|chr25 (19554483-19554603) | |
| 707-827, gnl|canFam2|chr6 (25467924-25467814) | |
| 707-827, gnl|dasNov1|scaffold_11351 (79223-79106) | |
| 707-827, gnl|echTel1|scaffold_248807 (7581-7691) | |
| 707-827, gnl|galGal2|chr14 (8989893-8989773) | |
| 707-827, gnl|hg17|chr16 (23294545-23294661) | |
| 707-827, gnl|Hg17|chr16 (23294557-23294677) | |
| 707-827, gnl|loxAfr1|scaffold_55910 (10271-10151) | |
| 707-827, gnl|mm7|chr7 (117838469-117838578) | |
| 707-827, gnl|Mm7|chr7 (117838474-117838594) | |
| 707-827, gnl|monDom2|scaffold_17 (43705361-43705245) | |
| 707-827, gnl|oryCun1|scaffold_109647 (17677-17567) | |
| 707-827, gnl|rheMac2|chr20 (21869851-21869967) | |
| 707-827, gnl|rn3|chr1 (180883968-180884077) | |
| 707-827, gnl|xenTro1|scaffold_6 (5215644-5215760) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |