Non-Coding RNA Search

Ss1.1-Pig4-TMW8061M02.5

Sequence:


               
               CACCCCCCGGGTGGGCCCGCGGCCATGGTACCAGCTGAAAGCTACGCAAATGCCCTCATA
GATGGTGGTTTGTTGCTGTAGTGTTCATCATGGCGAGCTGATGGCACCAGGAGGATGGAG
CCTCTGGCCAGTGTGAGTCCTAGCAGTGCAGGAGGGGAGACCCTGGAGGAGAGAGCCCGC
CTAAATTGATGTCTGCAGATTGAATTTCCAGAGGCTTAGGAGGAGGAAGTTCTCCAATGT
CCCGTGTCCAGGCCTTGGCTCAGGAAGCCCTGTATTCAGGAGGCCACCCTTTAAGGGTGT
CAATGAGCTTGTGAGAGGGTGATGGTTCCAAGTCCCAAGCAGATGCATCCGGGGTCGTCA
GCAGATGTGTTGAGTGTTTGATCCGGAGCACCAACCTCTGGGCACGTTGAATGCCAGCAG
GCACCTCTCCTGTTCGGGGGTGGAGGTTTTCCGATGGCTGCGTCTTCTAATGCCTCCTGT
CATGCTAGTTCTGTGCTACGAACCTTGCTTCCAGAAGACTCTTAAGATGTAGAACATTTT
AACGCTGATGCCTCAACGCAGAGTGATGCCTGGTAGATGGAGCTTGCAGATGGAGCCCAG
GGACCCTGTCATCTACTCACCTGCCTGCCCCAGCCTCGGTCGGAGGAATTCTTAGTGTGA
TGATGTAACCTGTGTGTCCAGAAAGTGTTCACTGTTGAAACGCCTTAGGCCAATACTCAC
AGGAAGCCACCTGGCAAACTGAGGGGGTCATTGTGTTGTGCTGTGGTCTGGGAGGGTACA
AGGTGGTGCTGCGCAAGTGGGGATAGAAATGCAGGTCTGGTTTGGGCATTCCTACTACAA
GAAGGGTGTGGTCAGGGTACTGATAGTGGTCTCTGCTCCATCTTGCCCTATATACTTTTT
AACTTGAATTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCCCCCGGGTGGGCCCGCGGCCATGGTACCAGCTGAAAGCTACGCAAATGCCCTCATA
GATGGTGGTTTGTTGCTGTAGTGTTCATCATGGCGAGCTGATGGCACCAGGAGGATGGAG
CCTCTGGCCAGTGTGAGTCCTAGCAGTGCAGGAGGGGAGACCCTGGAGGAGAGAGCCCGC
CTAAATTGATGTCTGCAGATTGAATTTCCAGAGGCTTAGGAGGAGGAAGTTCTCCAATGT
CCCGTGTCCAGGCCTTGGCTCAGGAAGCCCTGTATTCAGGAGGCCACCCTTTAAGGGTGT
CAATGAGCTTGTGAGAGGGTGATGGTTCCAAGTCCCAAGCAGATGCATCCGGGGTCGTCA
GCAGATGTGTTGAGTGTTTGATCCGGAGCACCAACCTCTGGGCACGTTGAATGCCAGCAG
GCACCTCTCCTGTTCGGGGGTGGAGGTTTTCCGATGGCTGCGTCTTCTAATGCCTCCTGT
CATGCTAGTTCTGTGCTACGAACCTTGCTTCCAGAAGACTCTTAAGATGTAGAACATTTT
AACGCTGATGCCTCAACGCAGAGTGATGCCTGGTAGATGGAGCTTGCAGATGGAGCCCAG
GGACCCTGTCATCTACTCACCTGCCTGCCCCAGCCTCGGTCGGAGGAATTCTTAGTGTGA
TGATGTAACCTGTGTGTCCAGAAAGTGTTCACTGTTGAAACGCCTTAGGCCAATACTCAC
AGGAAGCCACCTGGCAAACTGAGGGGGTCATTGTGTTGTGCTGTGGTCTGGGAGGGTACA
AGGTGGTGCTGCGCAAGTGGGGATAGAAATGCAGGTCTGGTTTGGGCATTCCTACTACAA
GAAGGGTGTGGTCAGGGTACTGATAGTGGTCTCTGCTCCATCTTGCCCTATATACTTTTT
AACTTGAATTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|1478282|gb|AAB05597.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1478282|gb|AAB05597.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-733, gnl|bosTau2|chr29 (38492276-38491557)
               

               
               4-733, gnl|Hg17|chr11 (64947937-64948665)
               

               
               4-733, gnl|Mm7|chr19 (5739309-5738623)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-733, gnl|bosTau2|chr29 (38492276-38491557)
               

               
               4-733, gnl|Hg17|chr11 (64947937-64948665)
               

               
               4-733, gnl|Mm7|chr19 (5739309-5738623)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               pro (0.512033)
               

               
               che (0.272628)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               che (0.272628)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)

	4-733, gnl\|bosTau2\|chr29 (38492276-38491557)
	4-733, gnl\|Hg17\|chr11 (64947937-64948665)
	4-733, gnl\|Mm7\|chr19 (5739309-5738623)

	pro (0.512033)
	che (0.272628)
	ill (0.175593)
	ton (0.1755)
	nje (0.16592)
	cki (0.165235)
	cje (0.165235)
	nco (0.161734)
	hlv (0.139256)
	nca (0.136874)