Non-Coding RNA Search

Ss1.1-Pig4-TMW8061M13.5

Sequence:


               
               CTATATTGCTATACAATTATGATCAGTTTTGTAAAAATTAACTGATCTGGTTCTAATTGC
CTCAAAGGCCGAAGCCCAGACATTTGAAATGGAAAGAAACAGAGAGGAGGTTAACTTAGC
TGATTGGTATGGAAACAGTTGGGCCAAGAGCCAGAAAATTTTCTTTGTAGCAACATGGCT
GGTTTTACTCTAAGAAGCTCTGCTGGTGGAAGTATAACATTTAGTCTGGTGGGCTGGATG
CCATTGCGCACAGTAAGGTTTTTATAGCTCCAAGCAGGGGTAACATTCCTTGGTATTGCT
GCAGCCAGGTGTGAAGGTTATGACTGATATATATTGTGTTTGTAACCTTGAATGCTAATC
CTGAAATGTAGTTTTTTAAACATATTTTTGTAAATCTTTGAAAGCTTATGAAAACCGATG
TCTTTCCTTGTAAGCACCAAGACCAAAATAAGGAAGAGGGACACTTGACAATCTTAAAGA
AGTAATGAGAAACTAAAATGAAAAGTTGCGATCAGTCAGAATGTTGGTATGGTCACGTCC
ATATCCTTCTGTGTCTCTCCAGATACTTCCTGGTGAGGCGCTGACATCTTGGTGACTCGT
CATTGTCACATGGGCCACACGGAACTTTGCACTTCCAAATACATTGTGCTCTTCCTCTCT
CAGCTCCCAGATGTTTCACCTCAGGCTCTGGGGTCACTCTGGAATTCGCAGGTTTCACTT
CCTTCTAGAAGTGAGATGTAGAATTTAAGATCCTTGAAGCCTCAGCATCCAGACTATCCC
AGAAGTCTTTCTCAACCTTGCAGAGGGTGTCCTGACATTGCCTAGTAACCTGAGGATCCC
TAAGAGGTGGGTCCCCCAGGACACGCCTGTCCGAGCATGCAGTGCATCCTTCAGGGGCTC
ACACAGTACTTCTCGTGGCTCCAGCTCTAGGTGGTGGCCTGCCCCAGGGTTTGCTGGACT
CGAGCACAGTTTTGGGGTGGACAAGGAAGATAAACGGTGGCCTTCTCCCTCTCCCCAGAG
ACTCTAGATTCTCATTGTTCCTCCAGTTTTATTGTAGGGCTTAACATTCCCCTCAAAAAG
CTCCTCTTCTAATGCTTACTCTTTGTTTCAAGGAAAGCCTGTTTTTCTTCTACCACATTT
TCCAGCATCAACTTTAAGAAAAATGCAACATCCATTGAAAAAAAGAAAGTGGGGTGTATG
CACATGGTTTAATTTCAGATTGCTTTTGAGTTTAAGTGGTATCAAATTTCAGTATATTTC
TGTCTTATGTTAAAGAAATATATTACTAAAACGTAAGTGAGCAATAATGTCAGCTGTCAA
GCACTAGATTTATTTTTGCAGGATATGGAGTGCAATGAACTGAGTCAATATGGCGAGGTG
TATGTGATCTGCAGGAGTTATGCCATTTAACGTAGGAAATGTGTGGGACTTTCCCCTCTG
CACTCCAGCCCTCACTGTACCATTAGGAGACGCAGGTTTCTTTGCTGGAGTGTAAAAAGT
TATGTCCATACACTCATGTAGAATGGATCTGAAGAAAGCAACATTATATATTGTGTTAGA
GAACATTTCTATGTGTTTAAACTTTTCACTTTATAGATGAATTATAACTCTTAATGCAAT
GATATAGCAATTTGAAAGCCTCTCCATGTTAACTGAATTGAAAATGCCTTGCTTTAAATA
TGGAATATGATGAAAGGGATTATCTATTTTTGCCTTAGATAGCTTTGTAATAATTTTTCT
CCAAGCGATTCAAATCTTTTGAAAAATGACATGAAATTTTCATTAAAAACCCTTTTCCTA
TGTTTGTTGTATACAGAAATTATGCAATAAAATTTCTTTATAAAAAGGAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATATTGCTATACAATTATGATCAGTTTTGTAAAAATTAACTGATCTGGTTCTAATTGC
CTCAAAGGCCGAAGCCCAGACATTTGAAATGGAAAGAAACAGAGAGGAGGTTAACTTAGC
TGATTGGTATGGAAACAGTTGGGCCAAGAGCCAGAAAATTTTCTTTGTAGCAACATGGCT
GGTTTTACTCTAAGAAGCTCTGCTGGTGGAAGTATAACATTTAGTCTGGTGGGCTGGATG
CCATTGCGCACAGTAAGGTTTTTATAGCTCCAAGCAGGGGTAACATTCCTTGGTATTGCT
GCAGCCAGGTGTGAAGGTTATGACTGATATATATTGTGTTTGTAACCTTGAATGCTAATC
CTGAAATGTAGTTTTTTAAACATATTTTTGTAAATCTTTGAAAGCTTATGAAAACCGATG
TCTTTCCTTGTAAGCACCAAGACCAAAATAAGGAAGAGGGACACTTGACAATCTTAAAGA
AGTAATGAGAAACTAAAATGAAAAGTTGCGATCAGTCAGAATGTTGGTATGGTCACGTCC
ATATCCTTCTGTGTCTCTCCAGATACTTCCTGGTGAGGCGCTGACATCTTGGTGACTCGT
CATTGTCACATGGGCCACACGGAACTTTGCACTTCCAAATACATTGTGCTCTTCCTCTCT
CAGCTCCCAGATGTTTCACCTCAGGCTCTGGGGTCACTCTGGAATTCGCAGGTTTCACTT
CCTTCTAGAAGTGAGATGTAGAATTTAAGATCCTTGAAGCCTCAGCATCCAGACTATCCC
AGAAGTCTTTCTCAACCTTGCAGAGGGTGTCCTGACATTGCCTAGTAACCTGAGGATCCC
TAAGAGGTGGGTCCCCCAGGACACGCCTGTCCGAGCATGCAGTGCATCCTTCAGGGGCTC
ACACAGTACTTCTCGTGGCTCCAGCTCTAGGTGGTGGCCTGCCCCAGGGTTTGCTGGACT
CGAGCACAGTTTTGGGGTGGACAAGGAAGATAAACGGTGGCCTTCTCCCTCTCCCCAGAG
ACTCTAGATTCTCATTGTTCCTCCAGTTTTATTGTAGGGCTTAACATTCCCCTCAAAAAG
CTCCTCTTCTAATGCTTACTCTTTGTTTCAAGGAAAGCCTGTTTTTCTTCTACCACATTT
TCCAGCATCAACTTTAAGAAAAATGCAACATCCATTGAAAAAAAGAAAGTGGGGTGTATG
CACATGGTTTAATTTCAGATTGCTTTTGAGTTTAAGTGGTATCAAATTTCAGTATATTTC
TGTCTTATGTTAAAGAAATATATTACTAAAACGTAAGTGAGCAATAATGTCAGCTGTCAA
GCACTAGATTTATTTTTGCAGGATATGGAGTGCAATGAACTGAGTCAATATGGCGAGGTG
TATGTGATCTGCAGGAGTTATGCCATTTAACGTAGGAAATGTGTGGGACTTTCCCCTCTG
CACTCCAGCCCTCACTGTACCATTAGGAGACGCAGGTTTCTTTGCTGGAGTGTAAAAAGT
TATGTCCATACACTCATGTAGAATGGATCTGAAGAAAGCAACATTATATATTGTGTTAGA
GAACATTTCTATGTGTTTAAACTTTTCACTTTATAGATGAATTATAACTCTTAATGCAAT
GATATAGCAATTTGAAAGCCTCTCCATGTTAACTGAATTGAAAATGCCTTGCTTTAAATA
TGGAATATGATGAAAGGGATTATCTATTTTTGCCTTAGATAGCTTTGTAATAATTTTTCT
CCAAGCGATTCAAATCTTTTGAAAAATGACATGAAATTTTCATTAAAAACCCTTTTCCTA
TGTTTGTTGTATACAGAAATTATGCAATAAAATTTCTTTATAAAAAGGAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-156, + strand, RNAz p=0.958857
               

               
               1332-1450, - strand, RNAz p=0.52012

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-156, + strand, RNAz p=0.958857
               

               
               1332-1450, - strand, RNAz p=0.52012

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1711, gnl|bosTau2|chr5 (30602422-30604126)
               

               
               1-1711, gnl|Hg17|chr12 (64145027-64146795)
               

               
               1-1711, gnl|Mm7|chr10 (120179100-120177486)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1711, gnl|bosTau2|chr5 (30602422-30604126)
               

               
               1-1711, gnl|Hg17|chr12 (64145027-64146795)
               

               
               1-1711, gnl|Mm7|chr10 (120179100-120177486)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               aor (1.36692)
               

               
               gul (1.24312)
               

               
               tbr (1.07925)
               

               
               ret (0.643666)
               

               
               hea (0.613497)
               

               
               ste (0.540833)
               

               
               bfe (0.449573)
               

               
               ldo (0.38801)
               

               
               bla (0.373042)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (1.36692)
               

               
               gul (1.24312)
               

               
               tbr (1.07925)
               

               
               ret (0.643666)
               

               
               hea (0.613497)
               

               
               ste (0.540833)
               

               
               bfe (0.449573)
               

               
               ldo (0.38801)
               

               
               bla (0.373042)
               

               
               vin (0.332557)
               

               
               ski (0.29347)
               

               
               spl (0.286369)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               isp (0.150376)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

	1-156, + strand, RNAz p=0.958857
	1332-1450, - strand, RNAz p=0.52012

	1-1711, gnl\|bosTau2\|chr5 (30602422-30604126)
	1-1711, gnl\|Hg17\|chr12 (64145027-64146795)
	1-1711, gnl\|Mm7\|chr10 (120179100-120177486)

	aor (1.36692)
	gul (1.24312)
	tbr (1.07925)
	ret (0.643666)
	hea (0.613497)
	ste (0.540833)
	bfe (0.449573)
	ldo (0.38801)
	bla (0.373042)
	vin (0.332557)
	ski (0.29347)
	spl (0.286369)
	hlv (0.278513)
	che (0.272628)
	pla (0.267344)
	lyg (0.266205)
	nms (0.213858)
	nep (0.183925)
	sag (0.182715)
	mgm (0.180343)
	isp (0.150376)
	ssp (0.13552)
	sug (0.127291)
	ese (0.126502)
	tra (0.123092)
	jca (0.11396)