Non-Coding RNA Search

Ss1.1-Pig4-TMW8061M16.5

Sequence:


               
               TAAATAATATTTACATAGTTATACTTTATTGGATTCCAATTTTCAGAATTAATATATAGA
AAAAGCATTAAAAACAAATGTAGTTACAAGGAAGAATTTAAACATTGTAACTTTGGACAA
TATGAAAGTAATGATTTTAGTGGGAAAAATAATAATTTAACTGATAGAGTCTGGGAAATT
CAAGGGGGAAGAGAAGTGGAGGAAAGCAAAAGCAACACTAATTTACCTAGAAAGCAGTCA
AGATACTACCTGAAATTGATGGATAAAGAGATAGTGCTTTATGTCTATTAAAGCAACAAA
GGAAATGGATATGTCATTAAAATATTCATACCCATAATTAAAATATAGGAGAAGGTAGTA
AACTAAATTCTTTGTCTTGAAAAATAAGATAAATGATACTACTACTCATTTATAAGATAA
ATGATACTATTGAAAAATAAGATAAATGACACTAAATGATACATAAGCAAATGATTTAGA
GGGATAAGAGAATTAGTTTAAAGGAGAAAGGCCTGGGAGTGGGACAGAGGGGAGATTTTT
ACTTATTACGAGCTTCTACAACTTTTGCATGTTTATTTCCTTTTCTAAAAACAACTACTA
TATATTCATACAAGCAATTCACACCTAGATTAGAGGTCATTTAACCTGAGGCTTTCATTT
TACAGATGATAAAACCAAGCCTAGAGCAATTAAATTATTTGCTGATGGTCATACATATAG
AGATTGGGAATAGAGTTGAGAGATTAGGTTTCAGGTCTCTTTCTTGTATAATGGATTACA
TGGCCAGGGAGGAAGGAAAGGGTAGGGTGACAGGTAGTGTTCAATACCTCTGCCACCACA
GCTATATATAGGTCTTTTACATTTTTTATTGCGCTCATTCACTGAAATCAGCAAGTAGTT
GATGTGCTAATTTGTCCTAAGTGTTTGTAACACCTGAGGTGACAAAGCTCTTATGCCAGA
AAATTTTTATCTAGAGCTTATTTAGCATCACTGGTCCAAAGTTATCAAGAAACAGCTTAG
ATTCTCATTTATGAGTTGAGCATGAATTTATAATCAAGAATGAATTATTGATGTCTTTTG
GTCAAGGCTGAATTACATTTCTTGGGGGCGGGGATGAGGATTTGTATAATGCATTTTCCC
TGGCTATAATCTCATGTATTTTCCTGACTAAAGCACTACAGTTGTCTTTGAAATCTCAAA
GCGGGTAAATTCCTTTCCTCACAGTAATATGAAGATAAGTGTTAATAGGCTACAGACTTC
CTATTAACTATACGATCACTGAGTGAATATACTAATTATATCCTAGCTTTGGGTACGCTG
TCAGATTTATTCTAGCAGTTATTGAACACTTAATAAAAATAAAACCTGTTACTGGGCACT
GAAAGTAATTAAAAGAAGTTTCAGCTTTAGGGTAGCCATGATGTTTGCATACCAGATAAT
TAAGTAGCTGAGCAAGAAGCACAAATGCCATTGACTAGGCATTGGGAAGCAGAGAGGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAATAATATTTACATAGTTATACTTTATTGGATTCCAATTTTCAGAATTAATATATAGA
AAAAGCATTAAAAACAAATGTAGTTACAAGGAAGAATTTAAACATTGTAACTTTGGACAA
TATGAAAGTAATGATTTTAGTGGGAAAAATAATAATTTAACTGATAGAGTCTGGGAAATT
CAAGGGGGAAGAGAAGTGGAGGAAAGCAAAAGCAACACTAATTTACCTAGAAAGCAGTCA
AGATACTACCTGAAATTGATGGATAAAGAGATAGTGCTTTATGTCTATTAAAGCAACAAA
GGAAATGGATATGTCATTAAAATATTCATACCCATAATTAAAATATAGGAGAAGGTAGTA
AACTAAATTCTTTGTCTTGAAAAATAAGATAAATGATACTACTACTCATTTATAAGATAA
ATGATACTATTGAAAAATAAGATAAATGACACTAAATGATACATAAGCAAATGATTTAGA
GGGATAAGAGAATTAGTTTAAAGGAGAAAGGCCTGGGAGTGGGACAGAGGGGAGATTTTT
ACTTATTACGAGCTTCTACAACTTTTGCATGTTTATTTCCTTTTCTAAAAACAACTACTA
TATATTCATACAAGCAATTCACACCTAGATTAGAGGTCATTTAACCTGAGGCTTTCATTT
TACAGATGATAAAACCAAGCCTAGAGCAATTAAATTATTTGCTGATGGTCATACATATAG
AGATTGGGAATAGAGTTGAGAGATTAGGTTTCAGGTCTCTTTCTTGTATAATGGATTACA
TGGCCAGGGAGGAAGGAAAGGGTAGGGTGACAGGTAGTGTTCAATACCTCTGCCACCACA
GCTATATATAGGTCTTTTACATTTTTTATTGCGCTCATTCACTGAAATCAGCAAGTAGTT
GATGTGCTAATTTGTCCTAAGTGTTTGTAACACCTGAGGTGACAAAGCTCTTATGCCAGA
AAATTTTTATCTAGAGCTTATTTAGCATCACTGGTCCAAAGTTATCAAGAAACAGCTTAG
ATTCTCATTTATGAGTTGAGCATGAATTTATAATCAAGAATGAATTATTGATGTCTTTTG
GTCAAGGCTGAATTACATTTCTTGGGGGCGGGGATGAGGATTTGTATAATGCATTTTCCC
TGGCTATAATCTCATGTATTTTCCTGACTAAAGCACTACAGTTGTCTTTGAAATCTCAAA
GCGGGTAAATTCCTTTCCTCACAGTAATATGAAGATAAGTGTTAATAGGCTACAGACTTC
CTATTAACTATACGATCACTGAGTGAATATACTAATTATATCCTAGCTTTGGGTACGCTG
TCAGATTTATTCTAGCAGTTATTGAACACTTAATAAAAATAAAACCTGTTACTGGGCACT
GAAAGTAATTAAAAGAAGTTTCAGCTTTAGGGTAGCCATGATGTTTGCATACCAGATAAT
TAAGTAGCTGAGCAAGAAGCACAAATGCCATTGACTAGGCATTGGGAAGCAGAGAGGAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               282-388, - strand, RNAz p=0.687278

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               282-388, - strand, RNAz p=0.687278

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               6-388, gnl|bosTau2|chr8 (48394828-48395230)
               

               
               6-388, gnl|Hg17|chr9 (101262717-101262371)
               


               
               502-995, gnl|bosTau2|chr8 (48395306-48395804)
               

               
               502-995, gnl|Hg17|chr9 (101262275-101261753)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-388, gnl|bosTau2|chr8 (48394828-48395230)
               

               
               6-388, gnl|Hg17|chr9 (101262717-101262371)
               


               
               502-995, gnl|bosTau2|chr8 (48395306-48395804)
               

               
               502-995, gnl|Hg17|chr9 (101262275-101261753)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               kid (0.908147)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.908147)
               

               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               jej (0.0989218)

	6-388, gnl\|bosTau2\|chr8 (48394828-48395230)
	6-388, gnl\|Hg17\|chr9 (101262717-101262371)

	502-995, gnl\|bosTau2\|chr8 (48395306-48395804)
	502-995, gnl\|Hg17\|chr9 (101262275-101261753)