Ss1.1-Pig4-TMW8061M22.3
|
ATTGCAAACTCTTTGGGGAAGGGAAGAATCAACTGAAGAATGAGAGTGGGTGCAAAGATT
GGCAGCATTTATCTCATATTCTTAGCAAACACGAGGAGAGTGAAATGCATATCAACAATA
GCGTTAAATATTCAAAATTAAAATCTGATTTGAATAAAACTAAAACTCTTGAAGCTGCAG
ATCGCAAATTGGAGGAGAAGGAGGGGATGGAAGGTGTAAAGCTGTTGTATTCGGTCGGCC
TGATCTGACGCGCCAAGCTCTCCCATTTGGCGCTGCCCCGGAGGTCGGCGGCATCTGTGA
GAGGCCCTGGCTGGCTCCACGTGTCATAGTACGTAACCAGCGGAGATGGCTTCTGCTTCA
AACTCTAAAGCTCAGCCGTGAGACGAAATGCCAGTTTCCATCTAGGCAGTTGTTAATCTC
GTCAGCCCGTCAGTCCACACCTTTTAAAAGGGGCGTTCCAGGACTGACATTTGACTGATG
TGGCTAATACTCTGTTCTGATTATCCTGAAAGAGGGCCAGAAAGGCTTACAGTTATCAGT
ACTAGTTGAACAGATACTTAGGTGAACAAGTGCCATTCAGAAAGGGAATGGGATCTGAAA
CTGCAGCTCTTTGCTGTTAAACCAAATACTTGTGGCTTATCTCATTTGGGCAAAACATTT
TATTGTTTGAGCAAAACAATATCTTTTGTTATGTTAAATTAAGGTGGTTAATTTGTGTTT
GTTTTGTTTTGCTTTAATTTAATTTGTCAATGTTTTGGCTTTTCTTGTCAGGTGAAAACT
AAGCATAAAGGGTGCATACCTATTTTTAAGTTGGTATAAATGTAAGAAATATTAAAATAA
AAATATATTGTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTGCAAACTCTTTGGGGAAGGGAAGAATCAACTGAAGAATGAGAGTGGGTGCAAAGATT
GGCAGCATTTATCTCATATTCTTAGCAAACACGAGGAGAGTGAAATGCATATCAACAATA
GCGTTAAATATTCAAAATTAAAATCTGATTTGAATAAAACTAAAACTCTTGAAGCTGCAG
ATCGCAAATTGGAGGAGAAGGAGGGGATGGAAGGTGTAAAGCTGTTGTATTCGGTCGGCC
TGATCTGACGCGCCAAGCTCTCCCATTTGGCGCTGCCCCGGAGGTCGGCGGCATCTGTGA
GAGGCCCTGGCTGGCTCCACGTGTCATAGTACGTAACCAGCGGAGATGGCTTCTGCTTCA
AACTCTAAAGCTCAGCCGTGAGACGAAATGCCAGTTTCCATCTAGGCAGTTGTTAATCTC
GTCAGCCCGTCAGTCCACACCTTTTAAAAGGGGCGTTCCAGGACTGACATTTGACTGATG
TGGCTAATACTCTGTTCTGATTATCCTGAAAGAGGGCCAGAAAGGCTTACAGTTATCAGT
ACTAGTTGAACAGATACTTAGGTGAACAAGTGCCATTCAGAAAGGGAATGGGATCTGAAA
CTGCAGCTCTTTGCTGTTAAACCAAATACTTGTGGCTTATCTCATTTGGGCAAAACATTT
TATTGTTTGAGCAAAACAATATCTTTTGTTATGTTAAATTAAGGTGGTTAATTTGTGTTT
GTTTTGTTTTGCTTTAATTTAATTTGTCAATGTTTTGGCTTTTCTTGTCAGGTGAAAACT
AAGCATAAAGGGTGCATACCTATTTTTAAGTTGGTATAAATGTAAGAAATATTAAAATAA
AAATATATTGTT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
3-249, gnl|bosTau2|chr12 (20578122-20577876) |
|
3-249, gnl|dasNov1|scaffold_21929 (6361-7156) |
|
3-249, gnl|echTel1|scaffold_177622 (3847-4643) |
|
3-249, gnl|hg17|chr13 (19296590-19297392) |
|
3-249, gnl|Hg17|chr13 (19296850-19296595) |
|
3-249, gnl|loxAfr1|scaffold_29453 (14565-13768) |
|
3-249, gnl|Mm7|chr14 (51661697-51661472) |
|
3-249, gnl|mm7|chr8 (20164256-20163506) |
|
3-249, gnl|oryCun1|scaffold_131451 (6924-7686) |
|
3-249, gnl|panTro1|chr14_random (4840931-4841733) |
|
3-249, gnl|rheMac2|chr17 (1658130-1657324) |
|
3-249, gnl|rn3|chr15 (35807232-35808004) |
| |
|
387-833, gnl|bosTau2|chr12 (20577726-20577282) |
|
387-833, gnl|Hg17|chr13 (19296412-19295652) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
3-249, gnl|bosTau2|chr12 (20578122-20577876) |
|
3-249, gnl|dasNov1|scaffold_21929 (6361-7156) |
|
3-249, gnl|echTel1|scaffold_177622 (3847-4643) |
|
3-249, gnl|hg17|chr13 (19296590-19297392) |
|
3-249, gnl|Hg17|chr13 (19296850-19296595) |
|
3-249, gnl|loxAfr1|scaffold_29453 (14565-13768) |
|
3-249, gnl|Mm7|chr14 (51661697-51661472) |
|
3-249, gnl|mm7|chr8 (20164256-20163506) |
|
3-249, gnl|oryCun1|scaffold_131451 (6924-7686) |
|
3-249, gnl|panTro1|chr14_random (4840931-4841733) |
|
3-249, gnl|rheMac2|chr17 (1658130-1657324) |
|
3-249, gnl|rn3|chr15 (35807232-35808004) |
| |
|
387-833, gnl|bosTau2|chr12 (20577726-20577282) |
|
387-833, gnl|Hg17|chr13 (19296412-19295652) |
|
sin (0.174948) |
|
rec (0.17307) |
|
duo (0.172801) |
|
eye (0.170503) |
|
tbr (0.154178) |
|
csk (0.140746) |
|
che (0.136314) |
|
ssp (0.13552) |
|
kid (0.129735) |
|
ese (0.126502) |
|
tra (0.123092) |
|
cly (0.120642) |
|
sin (0.174948) |
|
rec (0.17307) |
|
duo (0.172801) |
|
eye (0.170503) |
|
tbr (0.154178) |
|
csk (0.140746) |
|
che (0.136314) |
|
ssp (0.13552) |
|
kid (0.129735) |
|
ese (0.126502) |
|
tra (0.123092) |
|
cly (0.120642) |
