Non-Coding RNA Search

Ss1.1-Pig4-TMW8061N05.3

Sequence:


               
               CAGCTCAGGCGATCTCACGCTTTGCTTATGAGAAGATCAGCAACGGAGATGTGATCCTGG
TGTATGGATGGTTCAGAACTTCGAGCAGCCATTGATCAGTATGTGCAAGAGAAGATCGTG
CTTGCAGCTCAGGCGATCTCACGCTTTGCTTATGAGAAGATCAGCAACGGAGATGTGATC
CTGGTGTATGGATGCTCCTCTCTGGTGTCACGCATTCTTCAGGAGGCCTGGACGAAGGGC
CGGCGGTTTCGGGTGGTAGTGGTGGACAGCCGGCCACGGCTGGAGGGCAAGCACACGCTG
CGTTCTCTGGTCCGTGTGGGGGTCCCAGTCTCCTACCTGCTGATTCCTGCAGCTTCCTAT
GTTCTCCCAGAGGTTTCTAAGGTGCTATTGGGAGCTCATGCTCTCCTGGCCAATGGGTCT
GTGATGTCACGGGTAGGGACGGCGCAGCTGGCCCTAGTGGCCCGGGCCAACAACGTGCCA
GTGCTGGTCTGCTGTGAAACATACAAGTTCTGTGAGCGGGTGCAGACTGATGCCTTTGTC
TCGAACGAACTAGATGACCCTGACGATCTGCTGTGTGAGCGAGGAGAACACGTGGCCCTG
GCTAACTGGCAGAACCACGCATCCCTGCGGTTGTTGAATCTGGTCTATGATGTGACCCCC
CCAGAACTGGTGGATCTGGTGATCACGGAGCTGGGGATGATCCCTTGCAGCTCTGTACCT
GTTGTCCTACGAGTCAAGAGTAGTGACCAGTGAGTGGGGGAACACTGGGTTAATAAATGA
CATACTCCCTACACTCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTCAGGCGATCTCACGCTTTGCTTATGAGAAGATCAGCAACGGAGATGTGATCCTGG
TGTATGGATGGTTCAGAACTTCGAGCAGCCATTGATCAGTATGTGCAAGAGAAGATCGTG
CTTGCAGCTCAGGCGATCTCACGCTTTGCTTATGAGAAGATCAGCAACGGAGATGTGATC
CTGGTGTATGGATGCTCCTCTCTGGTGTCACGCATTCTTCAGGAGGCCTGGACGAAGGGC
CGGCGGTTTCGGGTGGTAGTGGTGGACAGCCGGCCACGGCTGGAGGGCAAGCACACGCTG
CGTTCTCTGGTCCGTGTGGGGGTCCCAGTCTCCTACCTGCTGATTCCTGCAGCTTCCTAT
GTTCTCCCAGAGGTTTCTAAGGTGCTATTGGGAGCTCATGCTCTCCTGGCCAATGGGTCT
GTGATGTCACGGGTAGGGACGGCGCAGCTGGCCCTAGTGGCCCGGGCCAACAACGTGCCA
GTGCTGGTCTGCTGTGAAACATACAAGTTCTGTGAGCGGGTGCAGACTGATGCCTTTGTC
TCGAACGAACTAGATGACCCTGACGATCTGCTGTGTGAGCGAGGAGAACACGTGGCCCTG
GCTAACTGGCAGAACCACGCATCCCTGCGGTTGTTGAATCTGGTCTATGATGTGACCCCC
CCAGAACTGGTGGATCTGGTGATCACGGAGCTGGGGATGATCCCTTGCAGCTCTGTACCT
GTTGTCCTACGAGTCAAGAGTAGTGACCAGTGAGTGGGGGAACACTGGGTTAATAAATGA
CATACTCCCTACACTCAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61877939|ref|XP_600199.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877939|ref|XP_600199.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               631-750, + strand, RNAz p=0.876088

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               631-750, + strand, RNAz p=0.876088

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               194-374, gnl|bosTau2|chr11 (51985213-51985393)
               

               
               194-374, gnl|Hg17|chr2 (27501455-27501275)
               

               
               194-374, gnl|Mm7|chr5 (30222263-30222083)
               


               
               552-797, gnl|bosTau2|chr11 (51986101-51986346)
               

               
               552-797, gnl|Hg17|chr2 (27499119-27498874)
               

               
               552-797, gnl|Mm7|chr5 (30220318-30220077)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               194-374, gnl|bosTau2|chr11 (51985213-51985393)
               

               
               194-374, gnl|Hg17|chr2 (27501455-27501275)
               

               
               194-374, gnl|Mm7|chr5 (30222263-30222083)
               


               
               552-797, gnl|bosTau2|chr11 (51986101-51986346)
               

               
               552-797, gnl|Hg17|chr2 (27499119-27498874)
               

               
               552-797, gnl|Mm7|chr5 (30220318-30220077)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ton (0.1755)
               

               
               cov (0.132153)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               cov (0.132153)
               

               
               med (0.116252)

	194-374, gnl\|bosTau2\|chr11 (51985213-51985393)
	194-374, gnl\|Hg17\|chr2 (27501455-27501275)
	194-374, gnl\|Mm7\|chr5 (30222263-30222083)

	552-797, gnl\|bosTau2\|chr11 (51986101-51986346)
	552-797, gnl\|Hg17\|chr2 (27499119-27498874)
	552-797, gnl\|Mm7\|chr5 (30220318-30220077)