Ss1.1-Pig4-TMW8061N05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTGGCTGTTCGCGAGGACTCGGGATCTGGGATGAAGGCGGAGCTTGCTTCTCGGCCAG GGGCAGGGGGGAGGGAGATGACCCAAGAAGAAAAGCTGCAGCTTCGGAAAGAAAAGAAAC AGCAAAAGAAGAAACGGAAGGAGGAAAAGGGGACAGAACCAGAAACTGGCTCTGCTGTGT CTGCAGCCCAATGTCAAGTAGGCCCGACCAAAGACCTGCCAGGACCGGACAGTCAGTTGG GCACTGCCAAGGAGAAAATTCCAGCAGGTCGGAGTAAAGCTGAACTTCGAGCTGAACGGC GAGCGAAGCAAGAGGCTGAGCGGGCCCTGAAGCAGGCAAGAAAAGGGGAACAAGGAGGGC CCCCTCCTCAGTCCTGCCCCAGCACAGCTGGAGAAACCCCCTCAGGAGTGAAGCGGCTAC CTGAGCACACCCAGGTTGATGAGCCCACACTTCTGAGAAGGCTTGTTAAACGGCCCGAGC GACAGCAGGTTCCAACACGAAAGGATTATGGCTCCAAAGTCAGTCTCTTCTCCCACCTAC CCCAGTACAGCAGACACAACTCTCTGACCCAGTTTATGAGCATCCCATCCTCTGTGATCC ACCCAGCCATGGTGCGGCTCGGCCTGCAGTACTCCCAGGGCCTGATCAGCGGCTCCAACG CCCGGTGCATCGCCCTGCTTCGTGCCTTGCAGCAGGTGATTCAGGACTACACGACACCAC CCAATGAAGAACTCTCAAGGGACCTGGTGAATAAACTAAAGCCCTACTTCAGCTTCCTGA CTCAGTGCCGCCCCCTGTCAGCGAGCATGTACAACGCCATCAAGTTTCTGAACAAGGAGA TCACGGGTGTGAGCAGCTCCAAGCGGGAAGAGGAGGCCAAGTCAGAACTTCAAGCAGCCA TTGATCAGTATGTGCAAGAGAAGATGGTGCTTGCAGCTCAGGCGATCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTGGCTGTTCGCGAGGACTCGGGATCTGGGATGAAGGCGGAGCTTGCTTCTCGGCCAG GGGCAGGGGGGAGGGAGATGACCCAAGAAGAAAAGCTGCAGCTTCGGAAAGAAAAGAAAC AGCAAAAGAAGAAACGGAAGGAGGAAAAGGGGACAGAACCAGAAACTGGCTCTGCTGTGT CTGCAGCCCAATGTCAAGTAGGCCCGACCAAAGACCTGCCAGGACCGGACAGTCAGTTGG GCACTGCCAAGGAGAAAATTCCAGCAGGTCGGAGTAAAGCTGAACTTCGAGCTGAACGGC GAGCGAAGCAAGAGGCTGAGCGGGCCCTGAAGCAGGCAAGAAAAGGGGAACAAGGAGGGC CCCCTCCTCAGTCCTGCCCCAGCACAGCTGGAGAAACCCCCTCAGGAGTGAAGCGGCTAC CTGAGCACACCCAGGTTGATGAGCCCACACTTCTGAGAAGGCTTGTTAAACGGCCCGAGC GACAGCAGGTTCCAACACGAAAGGATTATGGCTCCAAAGTCAGTCTCTTCTCCCACCTAC CCCAGTACAGCAGACACAACTCTCTGACCCAGTTTATGAGCATCCCATCCTCTGTGATCC ACCCAGCCATGGTGCGGCTCGGCCTGCAGTACTCCCAGGGCCTGATCAGCGGCTCCAACG CCCGGTGCATCGCCCTGCTTCGTGCCTTGCAGCAGGTGATTCAGGACTACACGACACCAC CCAATGAAGAACTCTCAAGGGACCTGGTGAATAAACTAAAGCCCTACTTCAGCTTCCTGA CTCAGTGCCGCCCCCTGTCAGCGAGCATGTACAACGCCATCAAGTTTCTGAACAAGGAGA TCACGGGTGTGAGCAGCTCCAAGCGGGAAGAGGAGGCCAAGTCAGAACTTCAAGCAGCCA TTGATCAGTATGTGCAAGAGAAGATGGTGCTTGCAGCTCAGGCGATCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 197-406, gnl|bosTau2|chr11 (51982941-51983150) | |
| 197-406, gnl|Hg17|chr2 (27503732-27503523) | |
| 197-406, gnl|Mm7|chr5 (30224268-30224056) | |
| 576-697, gnl|bosTau2|chr11 (51984021-51984142) | |
| 576-697, gnl|canFam2|chr17 (24303893-24304019) | |
| 576-697, gnl|danRer3|chr20 (19836437-19836563) | |
| 576-697, gnl|dasNov1|scaffold_2559 (68162-68036) | |
| 576-697, gnl|echTel1|scaffold_310269 (81247-81373) | |
| 576-697, gnl|fr1|chrUn (325218197-325218077) | |
| 576-697, gnl|galGal2|chrUn (108292174-108292300) | |
| 576-697, gnl|hg17|chr2 (27502541-27502667) | |
| 576-697, gnl|Hg17|chr2 (27502662-27502541) | |
| 576-697, gnl|loxAfr1|scaffold_3331 (25590-25464) | |
| 576-697, gnl|mm7|chr5 (30223351-30223477) | |
| 576-697, gnl|Mm7|chr5 (30223472-30223351) | |
| 576-697, gnl|monDom2|scaffold_1 (148862803-148862677) | |
| 576-697, gnl|oryCun1|scaffold_203841 (4754-4628) | |
| 576-697, gnl|panTro1|chr12 (28445777-28445903) | |
| 576-697, gnl|rheMac2|chr13 (27363124-27363250) | |
| 576-697, gnl|rn3|chr6 (25165185-25165059) | |
| 576-697, gnl|tetNig1|chr14 (5526123-5526003) | |
| 576-697, gnl|xenTro1|scaffold_1552 (113262-113135) | |
| 771-876, gnl|bosTau2|chr11 (51984607-51984712) | |
| 771-876, gnl|canFam2|chr17 (24303312-24303407) | |
| 771-876, gnl|danRer3|chr20 (19836084-19836178) | |
| 771-876, gnl|dasNov1|scaffold_2559 (68737-68642) | |
| 771-876, gnl|echTel1|scaffold_310269 (80692-80787) | |
| 771-876, gnl|fr1|chrUn (322738059-322738150) | |
| 771-876, gnl|galGal2|chrUn (108291460-108291560) | |
| 771-876, gnl|hg17|chr2 (27501967-27502062) | |
| 771-876, gnl|Hg17|chr2 (27502079-27501974) | |
| 771-876, gnl|loxAfr1|scaffold_3331 (26159-26064) | |
| 771-876, gnl|mm7|chr5 (30222864-30222962) | |
| 771-876, gnl|Mm7|chr5 (30222979-30222874) | |
| 771-876, gnl|monDom2|scaffold_1 (148863490-148863395) | |
| 771-876, gnl|oryCun1|scaffold_203841 (5475-5378) | |
| 771-876, gnl|panTro1|chr12 (28445203-28445298) | |
| 771-876, gnl|rheMac2|chr13 (27362548-27362643) | |
| 771-876, gnl|rn3|chr6 (25165682-25165580) | |
| 771-876, gnl|tetNig1|chr14 (5526466-5526375) | |
| 771-876, gnl|xenTro1|scaffold_1552 (114726-114631) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 197-406, gnl|bosTau2|chr11 (51982941-51983150) | |
| 197-406, gnl|Hg17|chr2 (27503732-27503523) | |
| 197-406, gnl|Mm7|chr5 (30224268-30224056) | |
| 576-697, gnl|bosTau2|chr11 (51984021-51984142) | |
| 576-697, gnl|canFam2|chr17 (24303893-24304019) | |
| 576-697, gnl|danRer3|chr20 (19836437-19836563) | |
| 576-697, gnl|dasNov1|scaffold_2559 (68162-68036) | |
| 576-697, gnl|echTel1|scaffold_310269 (81247-81373) | |
| 576-697, gnl|fr1|chrUn (325218197-325218077) | |
| 576-697, gnl|galGal2|chrUn (108292174-108292300) | |
| 576-697, gnl|hg17|chr2 (27502541-27502667) | |
| 576-697, gnl|Hg17|chr2 (27502662-27502541) | |
| 576-697, gnl|loxAfr1|scaffold_3331 (25590-25464) | |
| 576-697, gnl|mm7|chr5 (30223351-30223477) | |
| 576-697, gnl|Mm7|chr5 (30223472-30223351) | |
| 576-697, gnl|monDom2|scaffold_1 (148862803-148862677) | |
| 576-697, gnl|oryCun1|scaffold_203841 (4754-4628) | |
| 576-697, gnl|panTro1|chr12 (28445777-28445903) | |
| 576-697, gnl|rheMac2|chr13 (27363124-27363250) | |
| 576-697, gnl|rn3|chr6 (25165185-25165059) | |
| 576-697, gnl|tetNig1|chr14 (5526123-5526003) | |
| 576-697, gnl|xenTro1|scaffold_1552 (113262-113135) | |
| 771-876, gnl|bosTau2|chr11 (51984607-51984712) | |
| 771-876, gnl|canFam2|chr17 (24303312-24303407) | |
| 771-876, gnl|danRer3|chr20 (19836084-19836178) | |
| 771-876, gnl|dasNov1|scaffold_2559 (68737-68642) | |
| 771-876, gnl|echTel1|scaffold_310269 (80692-80787) | |
| 771-876, gnl|fr1|chrUn (322738059-322738150) | |
| 771-876, gnl|galGal2|chrUn (108291460-108291560) | |
| 771-876, gnl|hg17|chr2 (27501967-27502062) | |
| 771-876, gnl|Hg17|chr2 (27502079-27501974) | |
| 771-876, gnl|loxAfr1|scaffold_3331 (26159-26064) | |
| 771-876, gnl|mm7|chr5 (30222864-30222962) | |
| 771-876, gnl|Mm7|chr5 (30222979-30222874) | |
| 771-876, gnl|monDom2|scaffold_1 (148863490-148863395) | |
| 771-876, gnl|oryCun1|scaffold_203841 (5475-5378) | |
| 771-876, gnl|panTro1|chr12 (28445203-28445298) | |
| 771-876, gnl|rheMac2|chr13 (27362548-27362643) | |
| 771-876, gnl|rn3|chr6 (25165682-25165580) | |
| 771-876, gnl|tetNig1|chr14 (5526466-5526375) | |
| 771-876, gnl|xenTro1|scaffold_1552 (114726-114631) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nep (0.36785) | |
| clu (0.358938) | |
| nlu (0.191681) | |
| hyp (0.142837) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.36785) | |
| clu (0.358938) | |
| nlu (0.191681) | |
| hyp (0.142837) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| eje (0.0988338) |