Non-Coding RNA Search

Ss1.1-Pig4-TMW8061N10.3

Sequence:


               
               AGCCTTCATTTTCTTTGGAGGAACACTTAGCATTTCAGAGGGATAAAGAGATCTGGAGAG
TTTGGTGTGGTTAGGGATGTGTGTCTGTAAAATTCCCCTCAGCATTAAACTCTGACATCC
GCAATGAGAGGTCTTCAAATTGGTGCTAAGTTGGGTAGACACCCTACTGCTTCCTGAGTG
CACGAGCAACAGAAAGTCCAAAAGGACTTAGTGCAATTAGGCAGGAGGGAGCTGGATTCA
GAAACAGTCCACGATCCTATTCCCCTGTACTCCCCATTCACACCAACTTAAATGGAAATG
ATGCCACAGTAAGACCAGTAAGAGGAGTCTCCCTAAGATATGCCTACAAAGTCACCGTTC
TGATAAAAAGGAGAATGAAAGTTCACTATCTAAAATAAGCCTATAAGCTCATATGCAGCT
ACGACTTCTAAGTGAAACTCTTTCTCCCTCATGTCTTTGAATAGCAATAGAATGACACAC
ACACAGCCTGACTTTTAAAGTCAGACTTAACTACAAGCCCAGAGTGGGAGTGAACTAACC
CCCAAGGCTGTCTCCTGACTCAGCTCTTTCAGACAGTGTTATGTTCCAACCACGATGACT
GCAATACTGTTTACTACTGGAACATCAAAACCAACCTACTGTCTATACAATCACTTTTTC
TAGCGTTTCCCTGTACTTAGGTGATACCAAGTCTGTTCATAAGTTTTGAAGATAAATTAT
GTGAGATCATATTTTGGCATATGGGGGTGGAGAATGAATTCTTTACAGACTTTTTAGGAT
GATCCCATTTGTACCACAGAAAACATTTTGGATATTGTTATATATGAATATATAAATTTT
TCTTGGTTATTTTGCATTAAAATAAAGCTTTATTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTTCATTTTCTTTGGAGGAACACTTAGCATTTCAGAGGGATAAAGAGATCTGGAGAG
TTTGGTGTGGTTAGGGATGTGTGTCTGTAAAATTCCCCTCAGCATTAAACTCTGACATCC
GCAATGAGAGGTCTTCAAATTGGTGCTAAGTTGGGTAGACACCCTACTGCTTCCTGAGTG
CACGAGCAACAGAAAGTCCAAAAGGACTTAGTGCAATTAGGCAGGAGGGAGCTGGATTCA
GAAACAGTCCACGATCCTATTCCCCTGTACTCCCCATTCACACCAACTTAAATGGAAATG
ATGCCACAGTAAGACCAGTAAGAGGAGTCTCCCTAAGATATGCCTACAAAGTCACCGTTC
TGATAAAAAGGAGAATGAAAGTTCACTATCTAAAATAAGCCTATAAGCTCATATGCAGCT
ACGACTTCTAAGTGAAACTCTTTCTCCCTCATGTCTTTGAATAGCAATAGAATGACACAC
ACACAGCCTGACTTTTAAAGTCAGACTTAACTACAAGCCCAGAGTGGGAGTGAACTAACC
CCCAAGGCTGTCTCCTGACTCAGCTCTTTCAGACAGTGTTATGTTCCAACCACGATGACT
GCAATACTGTTTACTACTGGAACATCAAAACCAACCTACTGTCTATACAATCACTTTTTC
TAGCGTTTCCCTGTACTTAGGTGATACCAAGTCTGTTCATAAGTTTTGAAGATAAATTAT
GTGAGATCATATTTTGGCATATGGGGGTGGAGAATGAATTCTTTACAGACTTTTTAGGAT
GATCCCATTTGTACCACAGAAAACATTTTGGATATTGTTATATATGAATATATAAATTTT
TCTTGGTTATTTTGCATTAAAATAAAGCTTTATTCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-875, gnl|bosTau2|chr2 (54686303-54685434)
               

               
               3-875, gnl|Hg17|chr2 (206309509-206310383)
               

               
               3-875, gnl|Mm7|chr1 (62882040-62882937)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-875, gnl|bosTau2|chr2 (54686303-54685434)
               

               
               3-875, gnl|Hg17|chr2 (206309509-206310383)
               

               
               3-875, gnl|Mm7|chr1 (62882040-62882937)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               cga (0.279096)
               

               
               lyg (0.266205)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               lyg (0.266205)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	3-875, gnl\|bosTau2\|chr2 (54686303-54685434)
	3-875, gnl\|Hg17\|chr2 (206309509-206310383)
	3-875, gnl\|Mm7\|chr1 (62882040-62882937)

	cga (0.279096)
	lyg (0.266205)
	ski (0.146735)
	lnt (0.142308)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	jca (0.11396)
	eje (0.0988338)