Ss1.1-Pig4-TMW8061N12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCCAATGGACCAAGATTTATCTTCAGTCTACCCCCTGAAATCATTCACAATCCAAATT TCACAGTCAGAGACAACAGAGATAACACTGCAGGGGTGTATGCCCGGCGCGGAGGGTTCA GTCGGCAGAAGCAGGATTTGTACCTCCTGCCCATTGTGATCAGCGATAGTGGAATCCCGC CCATGAGTAGCACCAACACCCTCACCATCAAGGTCTGTGGGTGTGATGTGAATGGGGCGC TGCTGTCCTGCAATGCTGAGGCCTACATCCTGAACGCTGGCCTGAGCACAGGGGCTCTGA TCGCCATCCTCGCCTGCATCGTCATTCTCCTGGTCATCGTAGTGTTGTTTGTGACTTTGA GAAGGCAAAAGAAAGAACCACTCATTGTCTTCGAGGAAGAAGATGTCCGTGAGAACATCA TTACCTATGATGATGAGGGGGGTGGGGAAGAAGACACAGAAGCCTTTGATATTGCCACCC TCCAGAATCCGGATGGTATCAATGGATTTATCCCTCGCAAAGACATAAAACCCGAGTATC AGTACATGCCTAGACCCGGGCTCCGACCAGCACCCAACAGTGTGGATGTGGATGATTTCA TCAACACGAGAATACAGGAGGCAGATAATGACCCGACTGCCCCTCCTTATGACTCCATCC AAATCTATGGTTACGAAGGCAGGGGCTCAGTGGCTGGGTCCCTGAGCTCCTTAGAGTCGG CCACCACAGATTCAGACTTGGACTATGACTACCTACAGAACTGGGGACCTCGGTTTAAGA AACTAGCAGACTTGTACGGTTCCAAAGACACTTTTGATGACGACTCTTAACAATAATGAT ACAAATTTGGCCTTAAGAACTGTGTCTGGCGTTCTGAAGAATCTAGAAGATATGTAAACA GGTATTTTTTTAAATCAAGGAAAGGCTCATTTAAGACAAGCAAACTTTTACAGAGAGGAT ACATTTAATAAAACTGCAAGGACATCAAAGTGGTAAATACTGTGAAGTACCTTTTCTCAC AAAAAGGCAAATATTGAAGTTGTTTATCAACTTGGCTAGAGAAAAACCACTTGGCATACA AAATATTTAAGAGAAGGGGAAGTCTAATGGTGAACTCACAATGAAGGGAAATTTATGTGT TATGAACATCTAAGTCTTTTTTCTTCTTCTTTTTTTTTTTAATTTGTCAAAGAAGCTTCC ACAAAATTAGAAAGGACAACAGTTCTGAGCTGTAATTTCGCCTTAAACTATGGACACTCT CTATGTAGTGCATTTTTAAACTTGAAATATATAATATTCAGCCAGCTTAAACCCATACAA TGTATGTACAATACAATGTACAATTATGTCTCTTGAACATCAATCTTGTTACTGCTGATT CTTGTAAATCTTTTTGCTTCTACTTTCATCTTAAACTAATACGTGCCAGATATAACTGTC TTGTTTCAGTGAGAGGCGCCCTATTTCTATGTCATTTTTAATGTATCTATTTGTACAATT TTAAAGTTCTTATTTTAGTATACATACAAATATCAGTATTCTGACATGTAAGAAATGTTA CAGCATCACACTTATATTTTATGAACATTGTACTGTTGCTTTAATATGAGCTTCAATATA AGAAGCAACCTTTGAAATAAAAAAAGATTCTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCCAATGGACCAAGATTTATCTTCAGTCTACCCCCTGAAATCATTCACAATCCAAATT TCACAGTCAGAGACAACAGAGATAACACTGCAGGGGTGTATGCCCGGCGCGGAGGGTTCA GTCGGCAGAAGCAGGATTTGTACCTCCTGCCCATTGTGATCAGCGATAGTGGAATCCCGC CCATGAGTAGCACCAACACCCTCACCATCAAGGTCTGTGGGTGTGATGTGAATGGGGCGC TGCTGTCCTGCAATGCTGAGGCCTACATCCTGAACGCTGGCCTGAGCACAGGGGCTCTGA TCGCCATCCTCGCCTGCATCGTCATTCTCCTGGTCATCGTAGTGTTGTTTGTGACTTTGA GAAGGCAAAAGAAAGAACCACTCATTGTCTTCGAGGAAGAAGATGTCCGTGAGAACATCA TTACCTATGATGATGAGGGGGGTGGGGAAGAAGACACAGAAGCCTTTGATATTGCCACCC TCCAGAATCCGGATGGTATCAATGGATTTATCCCTCGCAAAGACATAAAACCCGAGTATC AGTACATGCCTAGACCCGGGCTCCGACCAGCACCCAACAGTGTGGATGTGGATGATTTCA TCAACACGAGAATACAGGAGGCAGATAATGACCCGACTGCCCCTCCTTATGACTCCATCC AAATCTATGGTTACGAAGGCAGGGGCTCAGTGGCTGGGTCCCTGAGCTCCTTAGAGTCGG CCACCACAGATTCAGACTTGGACTATGACTACCTACAGAACTGGGGACCTCGGTTTAAGA AACTAGCAGACTTGTACGGTTCCAAAGACACTTTTGATGACGACTCTTAACAATAATGAT ACAAATTTGGCCTTAAGAACTGTGTCTGGCGTTCTGAAGAATCTAGAAGATATGTAAACA GGTATTTTTTTAAATCAAGGAAAGGCTCATTTAAGACAAGCAAACTTTTACAGAGAGGAT ACATTTAATAAAACTGCAAGGACATCAAAGTGGTAAATACTGTGAAGTACCTTTTCTCAC AAAAAGGCAAATATTGAAGTTGTTTATCAACTTGGCTAGAGAAAAACCACTTGGCATACA AAATATTTAAGAGAAGGGGAAGTCTAATGGTGAACTCACAATGAAGGGAAATTTATGTGT TATGAACATCTAAGTCTTTTTTCTTCTTCTTTTTTTTTTTAATTTGTCAAAGAAGCTTCC ACAAAATTAGAAAGGACAACAGTTCTGAGCTGTAATTTCGCCTTAAACTATGGACACTCT CTATGTAGTGCATTTTTAAACTTGAAATATATAATATTCAGCCAGCTTAAACCCATACAA TGTATGTACAATACAATGTACAATTATGTCTCTTGAACATCAATCTTGTTACTGCTGATT CTTGTAAATCTTTTTGCTTCTACTTTCATCTTAAACTAATACGTGCCAGATATAACTGTC TTGTTTCAGTGAGAGGCGCCCTATTTCTATGTCATTTTTAATGTATCTATTTGTACAATT TTAAAGTTCTTATTTTAGTATACATACAAATATCAGTATTCTGACATGTAAGAAATGTTA CAGCATCACACTTATATTTTATGAACATTGTACTGTTGCTTTAATATGAGCTTCAATATA AGAAGCAACCTTTGAAATAAAAAAAGATTCTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 321-518, - strand, RNAz p=0.960758 | |
| 1510-1628, + strand, RNAz p=0.65898 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 321-518, - strand, RNAz p=0.960758 | |
| 1510-1628, + strand, RNAz p=0.65898 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_033664, + |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 114-316, gnl|bosTau2|chr24 (10302125-10301923) | |
| 114-316, gnl|canFam2|chr1 (14728767-14728469) | |
| 114-316, gnl|danRer3|chr2 (18533835-18534171) | |
| 114-316, gnl|dasNov1|scaffold_2242 (74977-75260) | |
| 114-316, gnl|echTel1|scaffold_302978 (8724-8447) | |
| 114-316, gnl|fr1|chrUn (100846144-100846423) | |
| 114-316, gnl|galGal2|chr2 (95357861-95357572) | |
| 114-316, gnl|hg17|chr18 (61680859-61681157) | |
| 114-316, gnl|Hg17|chr18 (61680914-61681116) | |
| 114-316, gnl|loxAfr1|scaffold_116 (68220-67928) | |
| 114-316, gnl|mm7|chr1 (110007120-110007417) | |
| 114-316, gnl|Mm7|chr1 (110007175-110007377) | |
| 114-316, gnl|monDom2|scaffold_21 (13811286-13810989) | |
| 114-316, gnl|oryCun1|scaffold_84038 (4943-5242) | |
| 114-316, gnl|panTro1|chr17_random (23312312-23312014) | |
| 114-316, gnl|rheMac2|chr18 (59296054-59296352) | |
| 114-316, gnl|rn3|chr13 (16989777-16990075) | |
| 114-316, gnl|tetNig1|chr6 (5294300-5294031) | |
| 114-316, gnl|xenTro1|scaffold_202 (55032-54751) | |
| 321-1656, gnl|bosTau2|chr18 (27440261-27441599) | |
| 321-1656, gnl|Hg17|chr16 (63539517-63538186) | |
| 321-1656, gnl|Mm7|chr8 (101228635-101227296) | |
| 326-496, gnl|bosTau2|chr10 (14011291-14011461) | |
| 326-496, gnl|Hg17|chr14 (22587536-22587366) | |
| 326-496, gnl|Mm7|chr14 (49499291-49499121) | |
| 621-799, gnl|bosTau2|chr13 (36332805-36332630) | |
| 621-799, gnl|canFam2|chr24 (49110510-49110721) | |
| 621-799, gnl|danRer3|chr15 (29380366-29380155) | |
| 621-799, gnl|dasNov1|scaffold_52742 (9965-9760) | |
| 621-799, gnl|echTel1|scaffold_287341 (97022-97220) | |
| 621-799, gnl|fr1|chrUn (148012371-148012582) | |
| 621-799, gnl|galGal2|chr20 (7378550-7378757) | |
| 621-799, gnl|hg17|chr20 (59945188-59945399) | |
| 621-799, gnl|Hg17|chr20 (59945202-59945377) | |
| 621-799, gnl|loxAfr1|scaffold_19933 (3885-4083) | |
| 621-799, gnl|mm7|chr2 (180396623-180396834) | |
| 621-799, gnl|Mm7|chr2 (180396637-180396812) | |
| 621-799, gnl|monDom2|scaffold_1 (179083825-179084036) | |
| 621-799, gnl|oryCun1|scaffold_175042 (44959-45168) | |
| 621-799, gnl|panTro1|chr21 (62951465-62951676) | |
| 621-799, gnl|rheMac2|chr10 (2593016-2592806) | |
| 621-799, gnl|rn3|chr3 (168885207-168885418) | |
| 621-799, gnl|tetNig1|chr15 (6793696-6793491) | |
| 621-799, gnl|xenTro1|scaffold_220 (321613-321824) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 114-316, gnl|bosTau2|chr24 (10302125-10301923) | |
| 114-316, gnl|canFam2|chr1 (14728767-14728469) | |
| 114-316, gnl|danRer3|chr2 (18533835-18534171) | |
| 114-316, gnl|dasNov1|scaffold_2242 (74977-75260) | |
| 114-316, gnl|echTel1|scaffold_302978 (8724-8447) | |
| 114-316, gnl|fr1|chrUn (100846144-100846423) | |
| 114-316, gnl|galGal2|chr2 (95357861-95357572) | |
| 114-316, gnl|hg17|chr18 (61680859-61681157) | |
| 114-316, gnl|Hg17|chr18 (61680914-61681116) | |
| 114-316, gnl|loxAfr1|scaffold_116 (68220-67928) | |
| 114-316, gnl|mm7|chr1 (110007120-110007417) | |
| 114-316, gnl|Mm7|chr1 (110007175-110007377) | |
| 114-316, gnl|monDom2|scaffold_21 (13811286-13810989) | |
| 114-316, gnl|oryCun1|scaffold_84038 (4943-5242) | |
| 114-316, gnl|panTro1|chr17_random (23312312-23312014) | |
| 114-316, gnl|rheMac2|chr18 (59296054-59296352) | |
| 114-316, gnl|rn3|chr13 (16989777-16990075) | |
| 114-316, gnl|tetNig1|chr6 (5294300-5294031) | |
| 114-316, gnl|xenTro1|scaffold_202 (55032-54751) | |
| 321-1656, gnl|bosTau2|chr18 (27440261-27441599) | |
| 321-1656, gnl|Hg17|chr16 (63539517-63538186) | |
| 321-1656, gnl|Mm7|chr8 (101228635-101227296) | |
| 326-496, gnl|bosTau2|chr10 (14011291-14011461) | |
| 326-496, gnl|Hg17|chr14 (22587536-22587366) | |
| 326-496, gnl|Mm7|chr14 (49499291-49499121) | |
| 621-799, gnl|bosTau2|chr13 (36332805-36332630) | |
| 621-799, gnl|canFam2|chr24 (49110510-49110721) | |
| 621-799, gnl|danRer3|chr15 (29380366-29380155) | |
| 621-799, gnl|dasNov1|scaffold_52742 (9965-9760) | |
| 621-799, gnl|echTel1|scaffold_287341 (97022-97220) | |
| 621-799, gnl|fr1|chrUn (148012371-148012582) | |
| 621-799, gnl|galGal2|chr20 (7378550-7378757) | |
| 621-799, gnl|hg17|chr20 (59945188-59945399) | |
| 621-799, gnl|Hg17|chr20 (59945202-59945377) | |
| 621-799, gnl|loxAfr1|scaffold_19933 (3885-4083) | |
| 621-799, gnl|mm7|chr2 (180396623-180396834) | |
| 621-799, gnl|Mm7|chr2 (180396637-180396812) | |
| 621-799, gnl|monDom2|scaffold_1 (179083825-179084036) | |
| 621-799, gnl|oryCun1|scaffold_175042 (44959-45168) | |
| 621-799, gnl|panTro1|chr21 (62951465-62951676) | |
| 621-799, gnl|rheMac2|chr10 (2593016-2592806) | |
| 621-799, gnl|rn3|chr3 (168885207-168885418) | |
| 621-799, gnl|tetNig1|chr15 (6793696-6793491) | |
| 621-799, gnl|xenTro1|scaffold_220 (321613-321824) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| sug (0.254582) | |
| bla (0.248694) | |
| eep (0.245128) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eru (0.120048) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sug (0.254582) | |
| bla (0.248694) | |
| eep (0.245128) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| csp (0.161186) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ese (0.126502) | |
| tra (0.123092) | |
| eru (0.120048) |