Non-Coding RNA Search

Ss1.1-Pig4-TMW8061N14.5

Sequence:


               
               TTCTGACCTGGCTTTCCTCTCAGAGCAAGTAGCCGCTGCCTGTGGATTTCAGGGTTTCCA
AGCTGAAGCAGGTATCCTGAATTACTACCGATTAGACTCCACACTGGGAATCCATGTAGA
CAAATCTGAACTAGATCACTCCAAACCCCTGCTGTCATTCAGCTTTGGACAGTCTGCCAT
CTTTCTCCTGGGAGGCCTCAAAAGAGATGAAGCTCCCACCGCCATGTTTATGCACAGTGG
TGACATCATGGTAATGTCAGGTTTCAGCCGCTTATTGAACCATGCAGTCCCCAGGGTCCT
TCCCAGTCCCAAAGGGGGAAGCCTTCCTTGCTGCCTAGAGACACCTCTCCCAGCTGACCT
CCCCAGAGACTCAGTAGTAGAGCCCTGTTCTATGGAGGACTGGCAGGTGTGTGCCAGCTA
CTTGAAAACTGCTCGTGTTAACATGACTGTCCGGCAGGTTCTGGCCGTGGGTCAGGACTT
CCCTTTGGAACCCGTGGAGGAGAATAAAAGAGACATCACCACGGAAGGTTTCTGCCACCT
GGATGATGGGAATAGCCAAGTAAAACGAGCTAGGTTAAACCCTGACTGCTGAGACGTGGA
CAGCCCACACTTTTACTCAGGCAGGTCCTACAGTAAATGACCACGCTGTTTTTTTATTGC
CATAGACTAGCACTGAGACACGCCAGAAACAGGGAAAAACTCATCACTGATCACACTGTT
GCCTTGGAACCTATCCCGAAGAGAAAACTGATGAACCACTTTGTTCAGAGAAGCGTGTGA
CACGTCCAGTCCTGGTTAGGTTTTGGCACTAATGTGTGTAGGAAGTCCAAGGAGTTATGA
CCTTCCACAGTAGCCTTCTCAGCCTCTGCCATTACCTCTGAGGGAGGTAGAAGGGAGGTT
CCATGTCTGTGGAGTCTAAATACCTCAGGTTTTATTCATGGGAAACGTCATACCCCTCCC
ACTACCCCATTCTGTGGTAAAATTGTGGTTCTATGAACCAACCATCAGTCTTAATTCTTC
CATTCAACATCAAACTCTTTGATCTTCTCTGGCCTTCACAGAAGAATCCTATATGCATTA
AGACAGTGGAACTAGAAGGCACATCCCCTAGAAAAGAAATTAGTCACAGCTATCTCTCTT
GCCTAAAAGGAATATGTATAAACCTAAGGAAAGGGGAGCAGTCATTTCTCCAGATGTCTC
TTAGGTCTCTAAACTCTTCCCGTTGGCTTTTAAATACAGTTTTAATTGTTGGACTGAAAA
AGTCTCAAGGGTATTCTGTAACTGTTTTTTCCGTGAATAAACTTACTCACTTTTAAATTA
AAGATCAGTATCTGTGTTTGAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTGACCTGGCTTTCCTCTCAGAGCAAGTAGCCGCTGCCTGTGGATTTCAGGGTTTCCA
AGCTGAAGCAGGTATCCTGAATTACTACCGATTAGACTCCACACTGGGAATCCATGTAGA
CAAATCTGAACTAGATCACTCCAAACCCCTGCTGTCATTCAGCTTTGGACAGTCTGCCAT
CTTTCTCCTGGGAGGCCTCAAAAGAGATGAAGCTCCCACCGCCATGTTTATGCACAGTGG
TGACATCATGGTAATGTCAGGTTTCAGCCGCTTATTGAACCATGCAGTCCCCAGGGTCCT
TCCCAGTCCCAAAGGGGGAAGCCTTCCTTGCTGCCTAGAGACACCTCTCCCAGCTGACCT
CCCCAGAGACTCAGTAGTAGAGCCCTGTTCTATGGAGGACTGGCAGGTGTGTGCCAGCTA
CTTGAAAACTGCTCGTGTTAACATGACTGTCCGGCAGGTTCTGGCCGTGGGTCAGGACTT
CCCTTTGGAACCCGTGGAGGAGAATAAAAGAGACATCACCACGGAAGGTTTCTGCCACCT
GGATGATGGGAATAGCCAAGTAAAACGAGCTAGGTTAAACCCTGACTGCTGAGACGTGGA
CAGCCCACACTTTTACTCAGGCAGGTCCTACAGTAAATGACCACGCTGTTTTTTTATTGC
CATAGACTAGCACTGAGACACGCCAGAAACAGGGAAAAACTCATCACTGATCACACTGTT
GCCTTGGAACCTATCCCGAAGAGAAAACTGATGAACCACTTTGTTCAGAGAAGCGTGTGA
CACGTCCAGTCCTGGTTAGGTTTTGGCACTAATGTGTGTAGGAAGTCCAAGGAGTTATGA
CCTTCCACAGTAGCCTTCTCAGCCTCTGCCATTACCTCTGAGGGAGGTAGAAGGGAGGTT
CCATGTCTGTGGAGTCTAAATACCTCAGGTTTTATTCATGGGAAACGTCATACCCCTCCC
ACTACCCCATTCTGTGGTAAAATTGTGGTTCTATGAACCAACCATCAGTCTTAATTCTTC
CATTCAACATCAAACTCTTTGATCTTCTCTGGCCTTCACAGAAGAATCCTATATGCATTA
AGACAGTGGAACTAGAAGGCACATCCCCTAGAAAAGAAATTAGTCACAGCTATCTCTCTT
GCCTAAAAGGAATATGTATAAACCTAAGGAAAGGGGAGCAGTCATTTCTCCAGATGTCTC
TTAGGTCTCTAAACTCTTCCCGTTGGCTTTTAAATACAGTTTTAATTGTTGGACTGAAAA
AGTCTCAAGGGTATTCTGTAACTGTTTTTTCCGTGAATAAACTTACTCACTTTTAAATTA
AAGATCAGTATCTGTGTTTGAGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61878853|ref|XP_582325.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61878853|ref|XP_582325.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               824-1014, - strand, RNAz p=0.926718
               

               
               1047-1152, - strand, RNAz p=0.597067

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               824-1014, - strand, RNAz p=0.926718
               

               
               1047-1152, - strand, RNAz p=0.597067

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               160-1344, gnl|bosTau2|chr10 (61425113-61423923)
               

               
               160-1344, gnl|Hg17|chr14 (77210340-77209118)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               160-1344, gnl|bosTau2|chr10 (61425113-61423923)
               

               
               160-1344, gnl|Hg17|chr14 (77210340-77209118)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               amn (0.417711)
               

               
               tes (0.207814)
               

               
               lun (0.150489)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               tes (0.207814)
               

               
               lun (0.150489)

	824-1014, - strand, RNAz p=0.926718
	1047-1152, - strand, RNAz p=0.597067

	160-1344, gnl\|bosTau2\|chr10 (61425113-61423923)
	160-1344, gnl\|Hg17\|chr14 (77210340-77209118)