Non-Coding RNA Search

Ss1.1-Pig4-TMW8061N22.5

Sequence:


               
               ATAACAGAACAGCTCATTCTTTCCTCCGTTCTGCAAAAGAAGATCCTTTTGCTGAACAGC
TCACTTGGGGAAACAATTCTTGGAGTCAGTGATCTTTGAACAAACTGGAATATTAATCTT
TTTACAATGTATATACGATATAAACTACCTCACTTGTATGTCTTGGGGAAGAAATTAATG
GACGTTAACAATATTTGTTATAAACTGTCCCTGAATCATATTATTTAAGTCACTTCAGCT
AGCCTTCAATGTACATTTAATAATATACATTTAATGATGTAAAATATTTTTAGGAAAAGC
TTTAAAACCAAAAATACCCTGTAACTGTGATGTGTGCTGTAGACGCTGAGGGAATCTGTG
TCCCTCTCTCAATGTCTTGTGTGTCCAGCCATGTGGAGACCAGGTTTGCAAACGTGGGAA
TTAACTCCTTCTCCTTTCATCCCTTTTCACGTGCTTTCCCCACATTGCAATTGACTAAAA
GTACCGTGAGATTAAAGTGCCCCTTCTTTCTCTCAGGCCTGTTTTACCTGTTTTCCATAA
ATGTATTACATGTCTGAAAGGAATATAGAGTATGGGCTTGAATAGTTCCTATTTTCCGAC
AGGCACTCGCAACTGTTTTTTTATAAATATGTCATGTAATAAAAAATAATGTGACATGAG
TTAAAATGTTTCTTTCAAACATTCTTAACAGTTTTACACACACATATCTTAATCTAAAAA
TATCGTCTTTTCTTTCAGGCATTCTCCAACTGTTTGCTAAAACTATGTGATTAGATTGAA
AAAACCATATATTATCACTAGGTCGCCAACTTTTTATGTTGTCTCCAATCTCGAACAGAT
TGATTCTTTTGTCCCATCAGTTTCATTGTTAAATATAATATGTATGTTGCATTTTATCCA
TAAAAATAAAGATAAAGAAGTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAACAGAACAGCTCATTCTTTCCTCCGTTCTGCAAAAGAAGATCCTTTTGCTGAACAGC
TCACTTGGGGAAACAATTCTTGGAGTCAGTGATCTTTGAACAAACTGGAATATTAATCTT
TTTACAATGTATATACGATATAAACTACCTCACTTGTATGTCTTGGGGAAGAAATTAATG
GACGTTAACAATATTTGTTATAAACTGTCCCTGAATCATATTATTTAAGTCACTTCAGCT
AGCCTTCAATGTACATTTAATAATATACATTTAATGATGTAAAATATTTTTAGGAAAAGC
TTTAAAACCAAAAATACCCTGTAACTGTGATGTGTGCTGTAGACGCTGAGGGAATCTGTG
TCCCTCTCTCAATGTCTTGTGTGTCCAGCCATGTGGAGACCAGGTTTGCAAACGTGGGAA
TTAACTCCTTCTCCTTTCATCCCTTTTCACGTGCTTTCCCCACATTGCAATTGACTAAAA
GTACCGTGAGATTAAAGTGCCCCTTCTTTCTCTCAGGCCTGTTTTACCTGTTTTCCATAA
ATGTATTACATGTCTGAAAGGAATATAGAGTATGGGCTTGAATAGTTCCTATTTTCCGAC
AGGCACTCGCAACTGTTTTTTTATAAATATGTCATGTAATAAAAAATAATGTGACATGAG
TTAAAATGTTTCTTTCAAACATTCTTAACAGTTTTACACACACATATCTTAATCTAAAAA
TATCGTCTTTTCTTTCAGGCATTCTCCAACTGTTTGCTAAAACTATGTGATTAGATTGAA
AAAACCATATATTATCACTAGGTCGCCAACTTTTTATGTTGTCTCCAATCTCGAACAGAT
TGATTCTTTTGTCCCATCAGTTTCATTGTTAAATATAATATGTATGTTGCATTTTATCCA
TAAAAATAAAGATAAAGAAGTGTA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               91-919, gnl|bosTau2|chr11 (31152012-31151182)
               

               
               91-919, gnl|Hg17|chr18 (6904899-6905707)
               

               
               91-919, gnl|Mm7|chr17 (66114651-66113841)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-919, gnl|bosTau2|chr11 (31152012-31151182)
               

               
               91-919, gnl|Hg17|chr18 (6904899-6905707)
               

               
               91-919, gnl|Mm7|chr17 (66114651-66113841)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ova (0.387397)
               

               
               eli (0.151814)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.387397)
               

               
               eli (0.151814)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               spc (0.113366)

	91-919, gnl\|bosTau2\|chr11 (31152012-31151182)
	91-919, gnl\|Hg17\|chr18 (6904899-6905707)
	91-919, gnl\|Mm7\|chr17 (66114651-66113841)

	ova (0.387397)
	eli (0.151814)
	csk (0.140746)
	ret (0.128733)
	spc (0.113366)