Ss1.1-Pig4-TMW8061O12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTCCGGCGTTCCTGTCAAGCAGTTCAACGTGGGAATTCTGAAGACTAAAAAATATGTGC AAAGTGTTCACTGGAGGGAAGCTCTGAATATCCTGAAGCTGGTGGTGTCTCGATCTGCCA GCCTGGTTTTGCCTTCCTACCAACACAGTGACCTTTCAAAGATGGAAATACACCGAGTGT GGACGAGTGCTTCCAAGGAATTACCTGGGAAAACTCTGGACTTTCACTTTGATATTTCAG AGACGCCCATCATCGGAAGGCGATACGATGAACTGCAGAGCTCCGCTGGCCGCGACGGGA AGCCCAGGGCCATGGCCGTCACCCGGAGCACGTCCTCCACCTCGTCGGGCTCCAACTCCA ACGTCCTCGTTCCTGTGAGCTGGAAAAGGCCGCAGTATTCTCAGAAGAGGACGAAAGAGA AGTTGGTTCATGTCCTTTCTCTGTGTGGCCAAGAAGTAGGACTAAGCAAAAATCCATCCG TGATTTTCTCGTCGTGCGGGGACCTGGACCTGCTGGAGCACCAGACGAGCCTGGTGTCGT CGGAGGACGGTGCCCGGGAGCAGGAGAACATGGATGACACCAACAGCGAGCAGCAGTTCC GGGTCTTCCGAGACTTCGACTTCCTAGACGTGGAGCTGGAGGACGGAGAGGGCGAGAGCA TGGACAATTTCAACTGGGGAGTACGCAGGCGGTCTCTGGATAGTCTGGACAAGTGTGATA TGCAGCTTCTGGAGGAGCGCCAGCTCTCAGGAAGTTCTCCCAGCCTCAATAAAATGAACC AGGAAGATTCCGACGAGTCCTCGGAAGAGGAGGACCTCACGGCCAGCCAGATCCTGGAGC AGTCTGACCTCATCATGAATCTCTCCCCGTCTGAGGAGACGAATCCCGTGGACTCGCGCA CCGCAGCCTGTGACATGACCCCTGCCGACTCTCATTCCTTTAACACCAGAATGGCCAGCT TTGATGCTTCTCTGCCCGAGATGAACAATCTGCAGATTTCTGAGGGTTCAAAGGCCGACG CTGTGCAGGAGGAGGAGGACACCACGGTGCATGAGGACGACCTTTCCAGCTCCATCAATG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTCCGGCGTTCCTGTCAAGCAGTTCAACGTGGGAATTCTGAAGACTAAAAAATATGTGC AAAGTGTTCACTGGAGGGAAGCTCTGAATATCCTGAAGCTGGTGGTGTCTCGATCTGCCA GCCTGGTTTTGCCTTCCTACCAACACAGTGACCTTTCAAAGATGGAAATACACCGAGTGT GGACGAGTGCTTCCAAGGAATTACCTGGGAAAACTCTGGACTTTCACTTTGATATTTCAG AGACGCCCATCATCGGAAGGCGATACGATGAACTGCAGAGCTCCGCTGGCCGCGACGGGA AGCCCAGGGCCATGGCCGTCACCCGGAGCACGTCCTCCACCTCGTCGGGCTCCAACTCCA ACGTCCTCGTTCCTGTGAGCTGGAAAAGGCCGCAGTATTCTCAGAAGAGGACGAAAGAGA AGTTGGTTCATGTCCTTTCTCTGTGTGGCCAAGAAGTAGGACTAAGCAAAAATCCATCCG TGATTTTCTCGTCGTGCGGGGACCTGGACCTGCTGGAGCACCAGACGAGCCTGGTGTCGT CGGAGGACGGTGCCCGGGAGCAGGAGAACATGGATGACACCAACAGCGAGCAGCAGTTCC GGGTCTTCCGAGACTTCGACTTCCTAGACGTGGAGCTGGAGGACGGAGAGGGCGAGAGCA TGGACAATTTCAACTGGGGAGTACGCAGGCGGTCTCTGGATAGTCTGGACAAGTGTGATA TGCAGCTTCTGGAGGAGCGCCAGCTCTCAGGAAGTTCTCCCAGCCTCAATAAAATGAACC AGGAAGATTCCGACGAGTCCTCGGAAGAGGAGGACCTCACGGCCAGCCAGATCCTGGAGC AGTCTGACCTCATCATGAATCTCTCCCCGTCTGAGGAGACGAATCCCGTGGACTCGCGCA CCGCAGCCTGTGACATGACCCCTGCCGACTCTCATTCCTTTAACACCAGAATGGCCAGCT TTGATGCTTCTCTGCCCGAGATGAACAATCTGCAGATTTCTGAGGGTTCAAAGGCCGACG CTGTGCAGGAGGAGGAGGACACCACGGTGCATGAGGACGACCTTTCCAGCTCCATCAATG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 728-847, - strand, RNAz p=0.523938 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 728-847, - strand, RNAz p=0.523938 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 60-242, gnl|bosTau2|chr12 (15997844-15997662) | |
| 60-242, gnl|canFam2|chr25 (10875038-10874849) | |
| 60-242, gnl|danRer3|chr15 (1184746-1184558) | |
| 60-242, gnl|echTel1|scaffold_257473 (5886-5694) | |
| 60-242, gnl|fr1|chrUn (56871854-56872052) | |
| 60-242, gnl|galGal2|chr1 (166677504-166677312) | |
| 60-242, gnl|hg17|chr13 (31719453-31719650) | |
| 60-242, gnl|Hg17|chr13 (31719457-31719639) | |
| 60-242, gnl|loxAfr1|scaffold_981 (112016-112213) | |
| 60-242, gnl|mm7|chr5 (149382498-149382695) | |
| 60-242, gnl|Mm7|chr5 (149382502-149382684) | |
| 60-242, gnl|monDom2|scaffold_15 (42691413-42691608) | |
| 60-242, gnl|oryCun1|scaffold_215408 (45949-45752) | |
| 60-242, gnl|panTro1|chr14 (30915458-30915655) | |
| 60-242, gnl|rheMac2|chr17 (11617970-11618167) | |
| 60-242, gnl|rn3|chr12 (4935046-4934849) | |
| 60-242, gnl|tetNig1|chr7 (2446623-2446818) | |
| 60-242, gnl|xenTro1|scaffold_384 (1133698-1133513) | |
| 649-872, gnl|bosTau2|chr12 (15983250-15983025) | |
| 649-872, gnl|canFam2|chr25 (10859614-10859396) | |
| 649-872, gnl|danRer3|chr15 (1177580-1177370) | |
| 649-872, gnl|dasNov1|scaffold_11927 (11666-11884) | |
| 649-872, gnl|echTel1|scaffold_313295 (36429-36208) | |
| 649-872, gnl|fr1|chrUn (56874095-56874305) | |
| 649-872, gnl|galGal2|chr1 (166668636-166668419) | |
| 649-872, gnl|hg17|chr13 (31733751-31733969) | |
| 649-872, gnl|Hg17|chr13 (31733751-31733976) | |
| 649-872, gnl|loxAfr1|scaffold_187257 (1254-1472) | |
| 649-872, gnl|mm7|chr5 (149399327-149399542) | |
| 649-872, gnl|Mm7|chr5 (149399327-149399544) | |
| 649-872, gnl|monDom2|scaffold_15 (42711193-42711411) | |
| 649-872, gnl|oryCun1|scaffold_186569 (13193-12972) | |
| 649-872, gnl|panTro1|chr14 (30929776-30929994) | |
| 649-872, gnl|rheMac2|chr17 (11632581-11632799) | |
| 649-872, gnl|rn3|chr12 (4916781-4916566) | |
| 649-872, gnl|tetNig1|chr7 (2448109-2448318) | |
| 649-872, gnl|xenTro1|scaffold_384 (1124701-1124482) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 60-242, gnl|bosTau2|chr12 (15997844-15997662) | |
| 60-242, gnl|canFam2|chr25 (10875038-10874849) | |
| 60-242, gnl|danRer3|chr15 (1184746-1184558) | |
| 60-242, gnl|echTel1|scaffold_257473 (5886-5694) | |
| 60-242, gnl|fr1|chrUn (56871854-56872052) | |
| 60-242, gnl|galGal2|chr1 (166677504-166677312) | |
| 60-242, gnl|hg17|chr13 (31719453-31719650) | |
| 60-242, gnl|Hg17|chr13 (31719457-31719639) | |
| 60-242, gnl|loxAfr1|scaffold_981 (112016-112213) | |
| 60-242, gnl|mm7|chr5 (149382498-149382695) | |
| 60-242, gnl|Mm7|chr5 (149382502-149382684) | |
| 60-242, gnl|monDom2|scaffold_15 (42691413-42691608) | |
| 60-242, gnl|oryCun1|scaffold_215408 (45949-45752) | |
| 60-242, gnl|panTro1|chr14 (30915458-30915655) | |
| 60-242, gnl|rheMac2|chr17 (11617970-11618167) | |
| 60-242, gnl|rn3|chr12 (4935046-4934849) | |
| 60-242, gnl|tetNig1|chr7 (2446623-2446818) | |
| 60-242, gnl|xenTro1|scaffold_384 (1133698-1133513) | |
| 649-872, gnl|bosTau2|chr12 (15983250-15983025) | |
| 649-872, gnl|canFam2|chr25 (10859614-10859396) | |
| 649-872, gnl|danRer3|chr15 (1177580-1177370) | |
| 649-872, gnl|dasNov1|scaffold_11927 (11666-11884) | |
| 649-872, gnl|echTel1|scaffold_313295 (36429-36208) | |
| 649-872, gnl|fr1|chrUn (56874095-56874305) | |
| 649-872, gnl|galGal2|chr1 (166668636-166668419) | |
| 649-872, gnl|hg17|chr13 (31733751-31733969) | |
| 649-872, gnl|Hg17|chr13 (31733751-31733976) | |
| 649-872, gnl|loxAfr1|scaffold_187257 (1254-1472) | |
| 649-872, gnl|mm7|chr5 (149399327-149399542) | |
| 649-872, gnl|Mm7|chr5 (149399327-149399544) | |
| 649-872, gnl|monDom2|scaffold_15 (42711193-42711411) | |
| 649-872, gnl|oryCun1|scaffold_186569 (13193-12972) | |
| 649-872, gnl|panTro1|chr14 (30929776-30929994) | |
| 649-872, gnl|rheMac2|chr17 (11632581-11632799) | |
| 649-872, gnl|rn3|chr12 (4916781-4916566) | |
| 649-872, gnl|tetNig1|chr7 (2448109-2448318) | |
| 649-872, gnl|xenTro1|scaffold_384 (1124701-1124482) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |