Non-Coding RNA Search

Ss1.1-Pig4-TMW8061O15.5

Sequence:


               
               TCTGTTGGTCAACAGGCAGATTCAGTTTGAAATTGCACATGCTTACTATGATATGATGGA
TTTGAAGGTTGCCATAGCTGACAAGCTGAGGGATCCTGACTCACACATCGTAAAAAAAAT
CAATAATCTTAATAAGTCAGCATTGAAATACTACCAGCTCTTCTTAGACTCCCTGAGAGA
CCCAAATAAAGTATTTCCTGAGCACATAGGGGAAGATGTCCTTCGCCCTGCCATGTTAGC
TAAGTTTCGAGTTGCCCGTCTCTATGGCAAAATCATCACTGCAGATCCCAAGAAAGAGCT
AGAAAATTTGGCAACATCATTAGAACATTATAAATTTATTGTTGACTACTGCGAGAGGCA
CCCTGAAGCTGCCCAAGAAATAGAAGTTGAGCTAGAACTTAGCAAAGAAATGGTAAGTCT
TCTTCCAACAAAAATGGAGAGGTTCAGAACCAAGATGGCCCTGACTTAATACTCCTCGTT
TTTAATGACAGAAAATGTGCAATATTGAATTTTTTCTCCTTAGTCAAACAGGCCCAATTC
CATTGTGATGTTTACCTTTATAGCCATATGAGTGCGACTGGAACTTGAGATGCAGTCAGA
CCTTTGTTAGGACCTTCATCAACATAACTATTAATTTATACCTAATTATGTACATAAATT
GCCTCGTTAAAGGGACATGTGATTGAATATTTTAGACTGCTTGTTGCCTATTTAAACCTT
TTCTGCCTCAGTTTCTAAAAGTGGTTCTTTGTTGGTTAATACTTGATGGATTTATTAAGA
GGAAAAATGCTGGGTAATATACCTGGGAGGCAAGCTGTTACTAGATTAAATTTGAAAAAG
TAACTTCGTGTAGTTATTCTTCCAGAAATACTCAATTTCCTAAATTCCTAATGTTTCCTT
TCTGAAAATATTAAAAAAAAACTAAGTTATGTTGTATAGTACCATAGTTTGTTTCCTTAT
ACAAGAAAAAGGCCTTGTCGGAAATATAATAAATGGACTTGTTTCGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTTGGTCAACAGGCAGATTCAGTTTGAAATTGCACATGCTTACTATGATATGATGGA
TTTGAAGGTTGCCATAGCTGACAAGCTGAGGGATCCTGACTCACACATCGTAAAAAAAAT
CAATAATCTTAATAAGTCAGCATTGAAATACTACCAGCTCTTCTTAGACTCCCTGAGAGA
CCCAAATAAAGTATTTCCTGAGCACATAGGGGAAGATGTCCTTCGCCCTGCCATGTTAGC
TAAGTTTCGAGTTGCCCGTCTCTATGGCAAAATCATCACTGCAGATCCCAAGAAAGAGCT
AGAAAATTTGGCAACATCATTAGAACATTATAAATTTATTGTTGACTACTGCGAGAGGCA
CCCTGAAGCTGCCCAAGAAATAGAAGTTGAGCTAGAACTTAGCAAAGAAATGGTAAGTCT
TCTTCCAACAAAAATGGAGAGGTTCAGAACCAAGATGGCCCTGACTTAATACTCCTCGTT
TTTAATGACAGAAAATGTGCAATATTGAATTTTTTCTCCTTAGTCAAACAGGCCCAATTC
CATTGTGATGTTTACCTTTATAGCCATATGAGTGCGACTGGAACTTGAGATGCAGTCAGA
CCTTTGTTAGGACCTTCATCAACATAACTATTAATTTATACCTAATTATGTACATAAATT
GCCTCGTTAAAGGGACATGTGATTGAATATTTTAGACTGCTTGTTGCCTATTTAAACCTT
TTCTGCCTCAGTTTCTAAAAGTGGTTCTTTGTTGGTTAATACTTGATGGATTTATTAAGA
GGAAAAATGCTGGGTAATATACCTGGGAGGCAAGCTGTTACTAGATTAAATTTGAAAAAG
TAACTTCGTGTAGTTATTCTTCCAGAAATACTCAATTTCCTAAATTCCTAATGTTTCCTT
TCTGAAAATATTAAAAAAAAACTAAGTTATGTTGTATAGTACCATAGTTTGTTTCCTTAT
ACAAGAAAAAGGCCTTGTCGGAAATATAATAAATGGACTTGTTTCGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4884406|emb|CAB43311.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4884406|emb|CAB43311.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               361-516, - strand, RNAz p=0.951479

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-516, - strand, RNAz p=0.951479

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1005, gnl|bosTau2|chr28 (16376228-16375205)
               

               
               2-1005, gnl|Hg17|chr10 (70445711-70446733)
               

               
               2-1005, gnl|Mm7|chr10 (62078263-62077267)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1005, gnl|bosTau2|chr28 (16376228-16375205)
               

               
               2-1005, gnl|Hg17|chr10 (70445711-70446733)
               

               
               2-1005, gnl|Mm7|chr10 (62078263-62077267)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               amn (0.417711)
               

               
               ret (0.3862)
               

               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.461361)
               

               
               ski (0.440205)
               

               
               amn (0.417711)
               

               
               ret (0.3862)
               

               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               gul (0.177588)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	2-1005, gnl\|bosTau2\|chr28 (16376228-16375205)
	2-1005, gnl\|Hg17\|chr10 (70445711-70446733)
	2-1005, gnl\|Mm7\|chr10 (62078263-62077267)

	mgp (0.461361)
	ski (0.440205)
	amn (0.417711)
	ret (0.3862)
	fco (0.314416)
	cbe (0.239234)
	gul (0.177588)
	lin (0.145603)
	csk (0.140746)
	kid (0.129735)
	sug (0.127291)
	spc (0.113366)