Non-Coding RNA Search

Ss1.1-Pig4-TMW8061O22.3

Sequence:


               
               TTTTTTTTAATAAGAGTTGCAAAGTTTATTTCAGGTTCTCTCTTGGGTTTTTTTGTATTT
TTTTTTCTTTTTTGCCACACAGGCAGTATGTGGGAATTCCTAGAGCAGGGATTGAAGCTA
CGCCGCACAGCAGCAACCAGGGCCACAGTGGTGAGAACGCAGGAGCCTCAACCCACTAGG
CCATCAGAGAACTCCCCTACTGAACTTTTTCGAAGATGGCTCCTTTGAGATCTCAGCTTT
AGTCTGCCATTATCAAGAATTCATATCTTTTGATGATTGGAGGAGTATAATGGGAGTTTA
TAATTCTGAAGAAGCCATGTGTGGCTAAATGTGAAATTATTCTTCTTGAATGATGTTCTA
GGGTTGCATTCAGTGGCTTTTAACATGGAGCACAATTGAAATTTTCAGGTACCCCTTCTA
CATGCTTACCTGCATTGACATGGATTGGAAGGTGCTCACGTGGCTTCGTTATACTGTGTG
GATTCCCTTATATCCTCTGGGATGTTTGACAGAAGCTGTCGCAGTGATCCAGTCCATTCC
AATATTTAATGAAACAGGGAGATTCAGCTTCACATTGCCATATCCAGTGAAAATCAAAGT
TAGATTTTCCTTTTTTCTTCAGATTTACCTTATAATATTATTTTTAGGGTTATACGTAAA
TTTCCGTCATCTTTATAAACAGCGCAGGCGGCGCTTTGGACAAAAAAAGAAAAAGATCCA
CTAAAAAGAAAGATTTAGATGACCTCTTGCCAGTTTGAGCCTAATCTTTAATTCTTACAG
TTTTACCTTCTTGTACTGATGTAAAAGTTTTTAGTTTTTTTTTTTAAATGATTAAATTCT
CAGTGAGGCTGTTTTCCTTTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTAATAAGAGTTGCAAAGTTTATTTCAGGTTCTCTCTTGGGTTTTTTTGTATTT
TTTTTTCTTTTTTGCCACACAGGCAGTATGTGGGAATTCCTAGAGCAGGGATTGAAGCTA
CGCCGCACAGCAGCAACCAGGGCCACAGTGGTGAGAACGCAGGAGCCTCAACCCACTAGG
CCATCAGAGAACTCCCCTACTGAACTTTTTCGAAGATGGCTCCTTTGAGATCTCAGCTTT
AGTCTGCCATTATCAAGAATTCATATCTTTTGATGATTGGAGGAGTATAATGGGAGTTTA
TAATTCTGAAGAAGCCATGTGTGGCTAAATGTGAAATTATTCTTCTTGAATGATGTTCTA
GGGTTGCATTCAGTGGCTTTTAACATGGAGCACAATTGAAATTTTCAGGTACCCCTTCTA
CATGCTTACCTGCATTGACATGGATTGGAAGGTGCTCACGTGGCTTCGTTATACTGTGTG
GATTCCCTTATATCCTCTGGGATGTTTGACAGAAGCTGTCGCAGTGATCCAGTCCATTCC
AATATTTAATGAAACAGGGAGATTCAGCTTCACATTGCCATATCCAGTGAAAATCAAAGT
TAGATTTTCCTTTTTTCTTCAGATTTACCTTATAATATTATTTTTAGGGTTATACGTAAA
TTTCCGTCATCTTTATAAACAGCGCAGGCGGCGCTTTGGACAAAAAAAGAAAAAGATCCA
CTAAAAAGAAAGATTTAGATGACCTCTTGCCAGTTTGAGCCTAATCTTTAATTCTTACAG
TTTTACCTTCTTGTACTGATGTAAAAGTTTTTAGTTTTTTTTTTTAAATGATTAAATTCT
CAGTGAGGCTGTTTTCCTTTTCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22760574|dbj|BAC11249.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22760574|dbj|BAC11249.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               260-515, gnl|bosTau2|chr10 (9057624-9057885)
               

               
               260-515, gnl|Hg17|chr15 (63650817-63651045)
               


               
               641-861, gnl|bosTau2|chr10 (9061701-9061917)
               

               
               641-861, gnl|Hg17|chr15 (63655687-63655899)
               

               
               641-861, gnl|Mm7|chr9 (65018179-65017982)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               260-515, gnl|bosTau2|chr10 (9057624-9057885)
               

               
               260-515, gnl|Hg17|chr15 (63650817-63651045)
               


               
               641-861, gnl|bosTau2|chr10 (9061701-9061917)
               

               
               641-861, gnl|Hg17|chr15 (63655687-63655899)
               

               
               641-861, gnl|Mm7|chr9 (65018179-65017982)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               che (0.136314)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

	260-515, gnl\|bosTau2\|chr10 (9057624-9057885)
	260-515, gnl\|Hg17\|chr15 (63650817-63651045)

	641-861, gnl\|bosTau2\|chr10 (9061701-9061917)
	641-861, gnl\|Hg17\|chr15 (63655687-63655899)
	641-861, gnl\|Mm7\|chr9 (65018179-65017982)

	fbs (0.175346)
	fhi (0.169578)
	lin (0.145603)
	che (0.136314)
	clu (0.119646)
	spc (0.113366)