Ss1.1-Pig4-TMW8061P01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGATGGGCCTGGATGGCGGCTGCCGAGGCGCGGTGGAATCATGTGTGGGTCGGCACCGAC ACCGGCATCCTGAAAGGGGTGAACCTTCAGCGCAAACAAGCGGTAAACTACACGGCGGCG GGACAGCCGCAGCGCGAGGAGGCGGTGAGCGCCCTGTGCTGGGGCGCGGGCGGCGAGACC CAGATCCTAGTCGGCTGTGCCGATAGGACAGTGAAGCTCTTCAGCACCGAGGAGGGCAGG TTCCAGGGCCAGAGGCACTGCCCCGGAGGCGAGGGCACCTTCCGAGGCCTCGCCCAGGTT GACGGCACCCTCATCACGTGTGTGGAATCTGGGATACTTCGAGTGTGGCATGACAATGAC AAGGAAGCATCCTCTGACCCACTCCTAGAACTGAGAGTGGGCCCTGGGGTGTGTAGGATG CGCCAGGACCCATCTCGCCCCCATGTGGTTGCCACGGGTGGGAAGGAGAATGCTTTGAAG GTGTGGGACCTGCAGGGGTCTGAGGAGCCTGTGTTCAAGGCCAAGAACGTGCGGAATGAT TGGCTTGACCTGAGAGTTCCCATCTGGGACCAGGACATACAGTTCCTCCCTGAGTCACAG AAGCTGGTCACCTGTACAGGGTACCATCAGGTCCGTGTCTACGATCCAGCCTCCCCCCAG CGCAGGCCAGTCCTCGAGGCCACCTATGGAGAGTATCCACTGACAGCCATGACCCTCACT CCCGAGGGCAATTCAGTGATTGTGGGGAACACTCATGGGCAGCTGGCAGAAATTGACCTT CGGCAGGGGCGTTTACTGGGCTGTCTGAAGGGGCTGGCGGGCAGCGTCCGAGGGTTGCAG TGTCACCCTTCAAAGCCCCTCTTAGCCTCCTGTGGCTTGGACAGAGTCCTGAGGGTACAC AGGATCCGGAATCCACGGGGCCTGGAGCATAAGGTTTATCTCAAATCTCAACTGAACTGC CTCCTCCTATCAGGCAGGGATAACTGGGAGGATGAACCCCAGGAGCCTCAACAGCCCAAT GAGGTGCCCTCAGAAGATACAGAGACAGATGAACTTTGGGCTTCTTTGGAGGCAGCTGCC AAGCGGAAGCTCCCGGATTTGGAACAGACCCAAGGGGTTCTCCAAACCAGAAAGAGAAAA AAGAAGCGGCCTGGGTCCACCAATTCCTGAAAAGCTTGTGCTCACTTTGTAAATAAACTG CTTAATATGAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGATGGGCCTGGATGGCGGCTGCCGAGGCGCGGTGGAATCATGTGTGGGTCGGCACCGAC ACCGGCATCCTGAAAGGGGTGAACCTTCAGCGCAAACAAGCGGTAAACTACACGGCGGCG GGACAGCCGCAGCGCGAGGAGGCGGTGAGCGCCCTGTGCTGGGGCGCGGGCGGCGAGACC CAGATCCTAGTCGGCTGTGCCGATAGGACAGTGAAGCTCTTCAGCACCGAGGAGGGCAGG TTCCAGGGCCAGAGGCACTGCCCCGGAGGCGAGGGCACCTTCCGAGGCCTCGCCCAGGTT GACGGCACCCTCATCACGTGTGTGGAATCTGGGATACTTCGAGTGTGGCATGACAATGAC AAGGAAGCATCCTCTGACCCACTCCTAGAACTGAGAGTGGGCCCTGGGGTGTGTAGGATG CGCCAGGACCCATCTCGCCCCCATGTGGTTGCCACGGGTGGGAAGGAGAATGCTTTGAAG GTGTGGGACCTGCAGGGGTCTGAGGAGCCTGTGTTCAAGGCCAAGAACGTGCGGAATGAT TGGCTTGACCTGAGAGTTCCCATCTGGGACCAGGACATACAGTTCCTCCCTGAGTCACAG AAGCTGGTCACCTGTACAGGGTACCATCAGGTCCGTGTCTACGATCCAGCCTCCCCCCAG CGCAGGCCAGTCCTCGAGGCCACCTATGGAGAGTATCCACTGACAGCCATGACCCTCACT CCCGAGGGCAATTCAGTGATTGTGGGGAACACTCATGGGCAGCTGGCAGAAATTGACCTT CGGCAGGGGCGTTTACTGGGCTGTCTGAAGGGGCTGGCGGGCAGCGTCCGAGGGTTGCAG TGTCACCCTTCAAAGCCCCTCTTAGCCTCCTGTGGCTTGGACAGAGTCCTGAGGGTACAC AGGATCCGGAATCCACGGGGCCTGGAGCATAAGGTTTATCTCAAATCTCAACTGAACTGC CTCCTCCTATCAGGCAGGGATAACTGGGAGGATGAACCCCAGGAGCCTCAACAGCCCAAT GAGGTGCCCTCAGAAGATACAGAGACAGATGAACTTTGGGCTTCTTTGGAGGCAGCTGCC AAGCGGAAGCTCCCGGATTTGGAACAGACCCAAGGGGTTCTCCAAACCAGAAAGAGAAAA AAGAAGCGGCCTGGGTCCACCAATTCCTGAAAAGCTTGTGCTCACTTTGTAAATAAACTG CTTAATATGAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 383-543, + strand, RNAz p=0.759548 | |
| 989-1187, - strand, RNAz p=0.713584 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 383-543, + strand, RNAz p=0.759548 | |
| 989-1187, - strand, RNAz p=0.713584 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 179-305, gnl|bosTau2|chr29 (32617942-32618068) | |
| 179-305, gnl|Hg17|chr11 (62363288-62363162) | |
| 179-305, gnl|Mm7|chr19 (8416333-8416459) | |
| 383-543, gnl|bosTau2|chr29 (32620532-32620692) | |
| 383-543, gnl|Hg17|chr11 (62359888-62359729) | |
| 383-543, gnl|Mm7|chr19 (8418011-8418175) | |
| 628-738, gnl|bosTau2|chr29 (32622234-32622344) | |
| 628-738, gnl|Hg17|chr11 (62358578-62358468) | |
| 628-738, gnl|Mm7|chr19 (8419425-8419535) | |
| 787-935, gnl|bosTau2|chr29 (32622833-32622981) | |
| 787-935, gnl|Hg17|chr11 (62357986-62357838) | |
| 787-935, gnl|Mm7|chr19 (8419980-8420128) | |
| 989-1205, gnl|bosTau2|chr29 (32623636-32623852) | |
| 989-1205, gnl|canFam2|chr18 (56888561-56888373) | |
| 989-1205, gnl|echTel1|scaffold_292939 (7748-7544) | |
| 989-1205, gnl|hg17|chr11 (62356961-62357149) | |
| 989-1205, gnl|Hg17|chr11 (62357181-62356965) | |
| 989-1205, gnl|loxAfr1|scaffold_174663 (4-186) | |
| 989-1205, gnl|mm7|chr19 (8420780-8420596) | |
| 989-1205, gnl|Mm7|chr19 (8420562-8420774) | |
| 989-1205, gnl|monDom2|scaffold_150 (1164109-1164233) | |
| 989-1205, gnl|oryCun1|scaffold_133394 (1970-1782) | |
| 989-1205, gnl|panTro1|chr9 (63353328-63353516) | |
| 989-1205, gnl|rheMac2|chr14 (11250275-11250083) | |
| 989-1205, gnl|rn3|chr1 (211566397-211566213) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 179-305, gnl|bosTau2|chr29 (32617942-32618068) | |
| 179-305, gnl|Hg17|chr11 (62363288-62363162) | |
| 179-305, gnl|Mm7|chr19 (8416333-8416459) | |
| 383-543, gnl|bosTau2|chr29 (32620532-32620692) | |
| 383-543, gnl|Hg17|chr11 (62359888-62359729) | |
| 383-543, gnl|Mm7|chr19 (8418011-8418175) | |
| 628-738, gnl|bosTau2|chr29 (32622234-32622344) | |
| 628-738, gnl|Hg17|chr11 (62358578-62358468) | |
| 628-738, gnl|Mm7|chr19 (8419425-8419535) | |
| 787-935, gnl|bosTau2|chr29 (32622833-32622981) | |
| 787-935, gnl|Hg17|chr11 (62357986-62357838) | |
| 787-935, gnl|Mm7|chr19 (8419980-8420128) | |
| 989-1205, gnl|bosTau2|chr29 (32623636-32623852) | |
| 989-1205, gnl|canFam2|chr18 (56888561-56888373) | |
| 989-1205, gnl|echTel1|scaffold_292939 (7748-7544) | |
| 989-1205, gnl|hg17|chr11 (62356961-62357149) | |
| 989-1205, gnl|Hg17|chr11 (62357181-62356965) | |
| 989-1205, gnl|loxAfr1|scaffold_174663 (4-186) | |
| 989-1205, gnl|mm7|chr19 (8420780-8420596) | |
| 989-1205, gnl|Mm7|chr19 (8420562-8420774) | |
| 989-1205, gnl|monDom2|scaffold_150 (1164109-1164233) | |
| 989-1205, gnl|oryCun1|scaffold_133394 (1970-1782) | |
| 989-1205, gnl|panTro1|chr9 (63353328-63353516) | |
| 989-1205, gnl|rheMac2|chr14 (11250275-11250083) | |
| 989-1205, gnl|rn3|chr1 (211566397-211566213) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cag (0.302389) | |
| fce (0.271592) | |
| fcc (0.197785) | |
| eep (0.122564) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.302389) | |
| fce (0.271592) | |
| fcc (0.197785) | |
| eep (0.122564) |