Non-Coding RNA Search

Ss1.1-Pig4-TMW8061P02.5

Sequence:


               
               GGAACGTGAAAAAGAAAAGGAACGGGGTAAAAACAAAGATAAAGACCGGGATAAAGAACG
GGAAAAGGACCGAGATAAAGACAAGGAGAAGGACAGAGACAGAGAGCGGGAAAAAGAACA
TGAAAAGGAACGAGACAAAGAGAAGGAGAAAGAACAGGACAAAGAAAAGGAACGAGAAAA
GGACAGATCTAAAGAGATAGATGAGAAGAGAAAGAAGGATAAAAAGTCCAGAACACCACC
CAGAAGTTACAATGCATCAAGAAGATCTCGTAGTTCCAGCAGGGAAAGGCGTAGAAGGAG
GAGCAGGAGTTCTTCCAGATCGCCAAGAACATCAAAAACAATAAAAAGGAAATCTTCTAG
GTCTCCATCCCCTAGGAGCAGAAATAAGAAGGATAAAAAGAGAGAAAAAGAAAGGGACCA
TATCAGTGAAAGGAGAGAGAGAGAACGTTCAACCTCTACAAGAAAGAGTTCTAATGACAG
AGATGGGAAAGAAAAGGCGGAGAAGAACAGTACTTCACTGAAAGAAAAGGAGCACAACAA
AGAACCAGATTCAAATGTGGGCAAAGAAGTAGATGACAAAGATCCTCCACCAAGGACTGA
GGAAAACAAAGTGCAGCAAAATGGGAATTGTCAGCCAAATGAAGAAAACCTCTCTACCAA
AACAGAAGCTGTATAGGACCCACAAGTGCACCTCTAAACACATGCTGGAATAAAATCCAA
AGCTTTTAATGCTCTCAACAAGATGTTAAAACAGTGAGGAAATCCAGTAGAGCATAAAGA
TATGAGCTAACAGCTTTCCTAGTTGTTAGGGGACTTTGTGGCCATCTTGTTACTGAGTAA
GAAAACAAAGCATGGACATCATGAAAATAACAGGTGTTACCCAAACTCCTCATCTTCTAA
AATCTGTGCATTTCCATGGTGGCTGACACACTTGTCATGTGGTTTGTTAGTGTTTGCCAA
GAACCATTATAAATAAACAGGACGTTGAAGACCTAAATTTGTATGATCCATAAAGACTGG
AGATAAACATTGGAGGCTCTTTTAAAAAATGCTAGTAACTGAATTTTTGTATTGTTTTAC
TTTTTTTTAAAAAACTATTTCAATATATGCAGATTGATGATGTGCTTGAATCGGTGCAAA
TATATACACACCCTTGTAAGTGCAGAGTATGTAAGAAGTTTTAACATTTACTTCACAGGA
TATACAGTGATTGTGTTAAATTCTCACTATTGTGTTTTCTTTTGCTCACTGTTTAGGACA
GCAGTTTTTCTTTAAAATAGTTTTACAGATTAAAATTGCTTAAATACGTGGATTAAAAAC
CAACTGACAATGCATGCTACTATTCTCTTTCAAAAGAAAGAACAACCGTGTTGAATACTA
ATAATGTATTAGTATTCAGTGTTTAGAATCATTGGGTCTCCCCACAAAGTAAGCGTTTCT
TTTTGAACTTTCTTGACATTTCCGAGCTTATTATGAACAATATTGCAGTGTGTGTTGTCA
GCTGAAGGTGGCAAAGGTGCCATTTATAAAAAGAAAACTGGGTTTTCAAAATGGGCTATG
GGAGCACAAGCTGAAGCTTTAGTGCCTTCTACAATGTGGTATACTGTTTTCTAGAATTTT
ATATGTGCTAGTCATTTTCGATTCATACGGAACTTAGATGGATGTTCCATTCACTCCCAT
AGAAAAGTGTGTAAGTGGTATGTCAGAGCGGCTTCTTACTTAGTTCACCTAAGTAAGGGA
GAGGGAAGTTCTGTTTTTAAGAATGACTTTAGAGCTTGAAACAACAGTACAGTTTTGGGA
CCATCAGTTTTATACTGTGATAATAGAAAATGAAGCAGCATGTTCTTATTTCACTTAAAG
CAAACCCTTTAGTTGTCTTCATTGGATGGCCTTAATTATTACCTCTCAATCATCTTATAA
ATGATGTGCAGAAATTGTACTTAAAGAATACATGAGGTTATTTGTTTTATGTGTAAGAAT
ATATTTACTTGAGTTTAAAATATAGGTCATCCGACAGTGTTAGGTGCACTTTTGGCAGGA
AGTATGCAAGTAGTAAAATGACAACATTGATAATATTTTCCCCTAAGCCACAATTCCTAG
TTTCAGGACTTTGGTTGTTATGTTTCCCCAAAAGTTATACCTTTAATTAGCATGATGTTA
AAAAATCAAGTATAATTATTTTAATGCAATCTGATACAATCAAATTACTCAGTTGCCTTA
CCTCATGGAAAGAGTTACTTCTAGATTTAAAAGCTGAGTATCACATCAGTTACTTGGTTT
CAACTTGAGTTTTCTTTTAATGTTAATACTATTGAAACTTAGGTATTTGGTGGAGAATGG
AAAGAATTGCCCTTATTGCAAGTAATGAAGCCTGGTTTGATTATGAAGCTGCTTAATTTA
CTCTTCATGTGTTCATAATTACTGTGTTTTTTTTCTTTTTGTCACTGTATACATTAAAAT
TTTTGAAAGTGCTTTACTATGTAAAGTATAGATGGTCATTTTAATCATCCAACCACATAC
GGTTGACTGCTAAACTGCTTATTCTGATTCAAGAATGCTTGGGTGCATATGGAAAGATTG
GGAAGGAGTGTGTGTCTTACATCAACAGCTGTCTTATTTATGATAAGTAAGTAGAATAGA
GCAAATATTGTTTGAATCTTTGTCATTTTTAGTACCATTTCTGTAATAAAGCTAAGTATT
TTAGAGGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACGTGAAAAAGAAAAGGAACGGGGTAAAAACAAAGATAAAGACCGGGATAAAGAACG
GGAAAAGGACCGAGATAAAGACAAGGAGAAGGACAGAGACAGAGAGCGGGAAAAAGAACA
TGAAAAGGAACGAGACAAAGAGAAGGAGAAAGAACAGGACAAAGAAAAGGAACGAGAAAA
GGACAGATCTAAAGAGATAGATGAGAAGAGAAAGAAGGATAAAAAGTCCAGAACACCACC
CAGAAGTTACAATGCATCAAGAAGATCTCGTAGTTCCAGCAGGGAAAGGCGTAGAAGGAG
GAGCAGGAGTTCTTCCAGATCGCCAAGAACATCAAAAACAATAAAAAGGAAATCTTCTAG
GTCTCCATCCCCTAGGAGCAGAAATAAGAAGGATAAAAAGAGAGAAAAAGAAAGGGACCA
TATCAGTGAAAGGAGAGAGAGAGAACGTTCAACCTCTACAAGAAAGAGTTCTAATGACAG
AGATGGGAAAGAAAAGGCGGAGAAGAACAGTACTTCACTGAAAGAAAAGGAGCACAACAA
AGAACCAGATTCAAATGTGGGCAAAGAAGTAGATGACAAAGATCCTCCACCAAGGACTGA
GGAAAACAAAGTGCAGCAAAATGGGAATTGTCAGCCAAATGAAGAAAACCTCTCTACCAA
AACAGAAGCTGTATAGGACCCACAAGTGCACCTCTAAACACATGCTGGAATAAAATCCAA
AGCTTTTAATGCTCTCAACAAGATGTTAAAACAGTGAGGAAATCCAGTAGAGCATAAAGA
TATGAGCTAACAGCTTTCCTAGTTGTTAGGGGACTTTGTGGCCATCTTGTTACTGAGTAA
GAAAACAAAGCATGGACATCATGAAAATAACAGGTGTTACCCAAACTCCTCATCTTCTAA
AATCTGTGCATTTCCATGGTGGCTGACACACTTGTCATGTGGTTTGTTAGTGTTTGCCAA
GAACCATTATAAATAAACAGGACGTTGAAGACCTAAATTTGTATGATCCATAAAGACTGG
AGATAAACATTGGAGGCTCTTTTAAAAAATGCTAGTAACTGAATTTTTGTATTGTTTTAC
TTTTTTTTAAAAAACTATTTCAATATATGCAGATTGATGATGTGCTTGAATCGGTGCAAA
TATATACACACCCTTGTAAGTGCAGAGTATGTAAGAAGTTTTAACATTTACTTCACAGGA
TATACAGTGATTGTGTTAAATTCTCACTATTGTGTTTTCTTTTGCTCACTGTTTAGGACA
GCAGTTTTTCTTTAAAATAGTTTTACAGATTAAAATTGCTTAAATACGTGGATTAAAAAC
CAACTGACAATGCATGCTACTATTCTCTTTCAAAAGAAAGAACAACCGTGTTGAATACTA
ATAATGTATTAGTATTCAGTGTTTAGAATCATTGGGTCTCCCCACAAAGTAAGCGTTTCT
TTTTGAACTTTCTTGACATTTCCGAGCTTATTATGAACAATATTGCAGTGTGTGTTGTCA
GCTGAAGGTGGCAAAGGTGCCATTTATAAAAAGAAAACTGGGTTTTCAAAATGGGCTATG
GGAGCACAAGCTGAAGCTTTAGTGCCTTCTACAATGTGGTATACTGTTTTCTAGAATTTT
ATATGTGCTAGTCATTTTCGATTCATACGGAACTTAGATGGATGTTCCATTCACTCCCAT
AGAAAAGTGTGTAAGTGGTATGTCAGAGCGGCTTCTTACTTAGTTCACCTAAGTAAGGGA
GAGGGAAGTTCTGTTTTTAAGAATGACTTTAGAGCTTGAAACAACAGTACAGTTTTGGGA
CCATCAGTTTTATACTGTGATAATAGAAAATGAAGCAGCATGTTCTTATTTCACTTAAAG
CAAACCCTTTAGTTGTCTTCATTGGATGGCCTTAATTATTACCTCTCAATCATCTTATAA
ATGATGTGCAGAAATTGTACTTAAAGAATACATGAGGTTATTTGTTTTATGTGTAAGAAT
ATATTTACTTGAGTTTAAAATATAGGTCATCCGACAGTGTTAGGTGCACTTTTGGCAGGA
AGTATGCAAGTAGTAAAATGACAACATTGATAATATTTTCCCCTAAGCCACAATTCCTAG
TTTCAGGACTTTGGTTGTTATGTTTCCCCAAAAGTTATACCTTTAATTAGCATGATGTTA
AAAAATCAAGTATAATTATTTTAATGCAATCTGATACAATCAAATTACTCAGTTGCCTTA
CCTCATGGAAAGAGTTACTTCTAGATTTAAAAGCTGAGTATCACATCAGTTACTTGGTTT
CAACTTGAGTTTTCTTTTAATGTTAATACTATTGAAACTTAGGTATTTGGTGGAGAATGG
AAAGAATTGCCCTTATTGCAAGTAATGAAGCCTGGTTTGATTATGAAGCTGCTTAATTTA
CTCTTCATGTGTTCATAATTACTGTGTTTTTTTTCTTTTTGTCACTGTATACATTAAAAT
TTTTGAAAGTGCTTTACTATGTAAAGTATAGATGGTCATTTTAATCATCCAACCACATAC
GGTTGACTGCTAAACTGCTTATTCTGATTCAAGAATGCTTGGGTGCATATGGAAAGATTG
GGAAGGAGTGTGTGTCTTACATCAACAGCTGTCTTATTTATGATAAGTAAGTAGAATAGA
GCAAATATTGTTTGAATCTTTGTCATTTTTAGTACCATTTCTGTAATAAAGCTAAGTATT
TTAGAGGAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q59EW7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q59EW7_HUMAN

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-283, gnl|bosTau2|chr20 (8303236-8302948)
               

               
               1-283, gnl|Hg17|chr5 (65502256-65502532)
               


               
               377-527, gnl|bosTau2|chr20 (8293425-8293275)
               

               
               377-527, gnl|Hg17|chr5 (65509096-65509246)
               

               
               377-527, gnl|Mm7|chr13 (100882818-100882668)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-283, gnl|bosTau2|chr20 (8303236-8302948)
               

               
               1-283, gnl|Hg17|chr5 (65502256-65502532)
               


               
               377-527, gnl|bosTau2|chr20 (8293425-8293275)
               

               
               377-527, gnl|Hg17|chr5 (65509096-65509246)
               

               
               377-527, gnl|Mm7|chr13 (100882818-100882668)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               liv (0.438853)
               

               
               fco (0.314416)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               fco (0.314416)
               

               
               kid (0.259471)
               

               
               thg (0.253582)
               

               
               hea (0.204499)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	1-283, gnl\|bosTau2\|chr20 (8303236-8302948)
	1-283, gnl\|Hg17\|chr5 (65502256-65502532)

	377-527, gnl\|bosTau2\|chr20 (8293425-8293275)
	377-527, gnl\|Hg17\|chr5 (65509096-65509246)
	377-527, gnl\|Mm7\|chr13 (100882818-100882668)

	liv (0.438853)
	fco (0.314416)
	kid (0.259471)
	thg (0.253582)
	hea (0.204499)
	eje (0.197668)
	sag (0.182715)
	gul (0.177588)
	fty (0.17584)
	mcp (0.170648)
	tbr (0.154178)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	lnt (0.142308)
	sug (0.127291)
	tra (0.123092)
	pgl (0.118483)
	jca (0.11396)
	cty (0.10408)