Non-Coding RNA Search

Ss1.1-Pig4-TMW8061P06.5

Sequence:


               
               TAATTTACAGATCATATTTATTTTACTATTTTTGTAGAAAATTATTAATTTTGATTGTAT
TTTTGTATTTTCAAAGCTTCTTCACTTGTGTTCCCTAAATGTTCATATTGCTGCCCAAAA
GTATGACTGTGGAAGAAAAAAAAAAAACTTTAAAAATCCACACTTTTTGTTAAGAAGGAA
ACATTTAGCATTTATATATTTGTGTATGGAAAACACTTGATATTTTATCCCTGTTGCATC
TGGCTGCACAGAGCCTCTCCTCAAAGATGCTACAAAACTTGAATATAACACATTTTGGAA
GGCTGACTAACCTCGATTCTGTGTTGTGATGTGCAATACTGTTTCTAATGTTTGTATAAA
AAAAAATAACAGTGTAAACCTTTTTAATGCAAATTTATTTTTTTCATTGCATATTTTGCA
GATTTTATCCACAGTGTCATTTTTTACTGTCAGAAAAGATACCCCTTTTGTCATTGCAAC
TATTTTTTAAATCCAGAAATCTTTGTACTGATGTAAATGATTGTAGTTATTTTGGATAGT
GTTTTGCTAACAAAAGGAAAGACTTTTTTCATGCATATTTCTATTTTGTTTTTTTGGGTT
TTATTTTATTTTAATAGTAGTAAAATACTTGGAATAATTTTTCATATTCTTGTCATTAAT
ATTATTTTGTATTTTTATGTGGAAATATATAATTTTATGACACTAATTGCTAAAGTTTAT
TTTATGTTGAATTATTTTTGGAGCTGAAATCTTTGTAATATTAAAGCAACTAGTTTCTAA
TTCCCAGTTTCTGTATAGAATCGCACAAGTGGTTTATGGAGTGTTTGGATTGTAATTATA
AATGGTTCTTTGATATGCAAATTAATATTTTCAGTTGATTTTATTTTATATTCCTAATGG
GGTGTTAAAGCAGTTTTTTATTTTTTTCTAAATAAAAAGAGAACCCATGCTTTTATGAAC
ACTAGGTAAACGCCTTCAGCTTAAATTTTTTTGTTAAAATATTTTAGTTTATTTTATTGT
TATCTTCCAGGTGTCTAAATCTCCAGTCTGTCTGTTGTACTGGTAAATTAACTCTGTAAT
GGAATAGTTTGCTGCCAACTATTTATATTAAGTAATTTTTAAATATTTGTAATATTGTTG
ACTGACTAATAAACTATTAAGTTATTGGCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATTTACAGATCATATTTATTTTACTATTTTTGTAGAAAATTATTAATTTTGATTGTAT
TTTTGTATTTTCAAAGCTTCTTCACTTGTGTTCCCTAAATGTTCATATTGCTGCCCAAAA
GTATGACTGTGGAAGAAAAAAAAAAAACTTTAAAAATCCACACTTTTTGTTAAGAAGGAA
ACATTTAGCATTTATATATTTGTGTATGGAAAACACTTGATATTTTATCCCTGTTGCATC
TGGCTGCACAGAGCCTCTCCTCAAAGATGCTACAAAACTTGAATATAACACATTTTGGAA
GGCTGACTAACCTCGATTCTGTGTTGTGATGTGCAATACTGTTTCTAATGTTTGTATAAA
AAAAAATAACAGTGTAAACCTTTTTAATGCAAATTTATTTTTTTCATTGCATATTTTGCA
GATTTTATCCACAGTGTCATTTTTTACTGTCAGAAAAGATACCCCTTTTGTCATTGCAAC
TATTTTTTAAATCCAGAAATCTTTGTACTGATGTAAATGATTGTAGTTATTTTGGATAGT
GTTTTGCTAACAAAAGGAAAGACTTTTTTCATGCATATTTCTATTTTGTTTTTTTGGGTT
TTATTTTATTTTAATAGTAGTAAAATACTTGGAATAATTTTTCATATTCTTGTCATTAAT
ATTATTTTGTATTTTTATGTGGAAATATATAATTTTATGACACTAATTGCTAAAGTTTAT
TTTATGTTGAATTATTTTTGGAGCTGAAATCTTTGTAATATTAAAGCAACTAGTTTCTAA
TTCCCAGTTTCTGTATAGAATCGCACAAGTGGTTTATGGAGTGTTTGGATTGTAATTATA
AATGGTTCTTTGATATGCAAATTAATATTTTCAGTTGATTTTATTTTATATTCCTAATGG
GGTGTTAAAGCAGTTTTTTATTTTTTTCTAAATAAAAAGAGAACCCATGCTTTTATGAAC
ACTAGGTAAACGCCTTCAGCTTAAATTTTTTTGTTAAAATATTTTAGTTTATTTTATTGT
TATCTTCCAGGTGTCTAAATCTCCAGTCTGTCTGTTGTACTGGTAAATTAACTCTGTAAT
GGAATAGTTTGCTGCCAACTATTTATATTAAGTAATTTTTAAATATTTGTAATATTGTTG
ACTGACTAATAAACTATTAAGTTATTGGCAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               440-559, - strand, RNAz p=0.542748

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-559, - strand, RNAz p=0.542748

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1170, gnl|bosTau2|chr6 (63490962-63489792)
               

               
               1-1170, gnl|Hg17|chr4 (14746881-14748044)
               

               
               1-1170, gnl|Mm7|chr5 (42608172-42609334)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1170, gnl|bosTau2|chr6 (63490962-63489792)
               

               
               1-1170, gnl|Hg17|chr4 (14746881-14748044)
               

               
               1-1170, gnl|Mm7|chr5 (42608172-42609334)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               cbl (0.229595)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               cly (0.120642)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               cbl (0.229595)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               kid (0.129735)
               

               
               cly (0.120642)

	1-1170, gnl\|bosTau2\|chr6 (63490962-63489792)
	1-1170, gnl\|Hg17\|chr4 (14746881-14748044)
	1-1170, gnl\|Mm7\|chr5 (42608172-42609334)

	tra (0.246184)
	pgl (0.236967)
	cbl (0.229595)
	mgm (0.180343)
	rec (0.17307)
	cag (0.151194)
	liv (0.146284)
	kid (0.129735)
	cly (0.120642)