Non-Coding RNA Search

Ss1.1-Pig4-TMW8061P13.5

Sequence:


               
               ATGGAAGAGAAACCACATCAGTGGTCTGCATGTGAGAGTGGCTTCCTTCTGGGCATGGAC
TTTGTTGCCCAACAGAAAATGAGAACTCAGACAGAGGAGTTACATTACAAATACAGTGTC
TGTGATAAAAGCTTCCACCAGAGCTCAGCCCTTCTCCAACATCAGACAATCCACATTGGT
GAAAAACCGTATATCTGTAATGTGGGTGAGAAAGGTCTTGAGCTCAGCACTCCCCATGCA
TCGGAAACCTCACAAATGTCTTGACTGGACAAGAAGGTGTAATACCATAAAAAAATACAT
TTACAATGTAAGAAAACTCCTTAAGATGAAGACCTCTAAGCAAATCTCAGACTTTGCTCA
GAGCTCAGATTTCACTGGGGACCAGAGAATCTACGATTGTAGGAAGTCAAAAAATGGTTT
GCCCAGAGAGCTATCCTTGCAGAACCTTACCAGTCACTCCAACGAGAAACCTTACAAAGG
ACCTGAGTTTGGGAAAACCTTTAGTTCAAGCTGAATCTGATTTCCCATAAGAGGATTCAT
ATAGGTGGGAAACCTTAGAAATTTGCTGAGTGTGAGAAAGCCTTCTAGCAATGCTTGCCT
CTCCTCATTTGATGAGAATTTACATCAGAGGACACCATTTTACATGTCCCGTGTCAACAG
TGCCTCAGGCAGTATGTACATCTCATTGGATGTCAGAAAACCCAATTTGGGAGAAACCCC
AACAGGTGTGAAGAAAGCTTCTAACAGAACTATGACTTTCTTAGCCATCAGAGAAGCCAT
ACTGGTGAAAGTTTGTATTTATTTGTCTAGAATGTGGCAAAAGCATTGGTTGAAGAGCCT
TCTTGGGTTTGCAAGAAAAAAACCCAATCTGAGAAAAGACCTTATGAATTGTCTGAATGA
GAAAAGCTTCCGTCAATGATCAGCTCTTGTGGTACACCAGGGAACTCAGATAAGTGAAAA
ATCCTATACATACCTGGAGTCTGAAAAAAGCCTTGCTAGAAACCCTTACCTTATTGGGCC
CCAAAGAACTTACTCTGCAGAGAATTTTCTTCTAGTAAGAGATCTGACTGTGGACTGTGT
ATGTTTAATAGGCCTGAGAAGAATTATTCTCATAGTTAGTTGACCCATATAGTAGAGATG
ACTTTTAATGGAGTCAGTATGTAAACAGTTTGTTTTTAGATGCCCAGAAGCTTGTTCTGG
GAGGAGCTAGGGCAGGTCACAGAGACCTGATGGGTAACTCAGGTAAAGATGCTTTTCTTT
TATCTGAACCACTTCATGATTGCTTTACTTTCAGTTTTTAAAATTTGGAAATCCAATAAA
GGAAAGGACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGAAGAGAAACCACATCAGTGGTCTGCATGTGAGAGTGGCTTCCTTCTGGGCATGGAC
TTTGTTGCCCAACAGAAAATGAGAACTCAGACAGAGGAGTTACATTACAAATACAGTGTC
TGTGATAAAAGCTTCCACCAGAGCTCAGCCCTTCTCCAACATCAGACAATCCACATTGGT
GAAAAACCGTATATCTGTAATGTGGGTGAGAAAGGTCTTGAGCTCAGCACTCCCCATGCA
TCGGAAACCTCACAAATGTCTTGACTGGACAAGAAGGTGTAATACCATAAAAAAATACAT
TTACAATGTAAGAAAACTCCTTAAGATGAAGACCTCTAAGCAAATCTCAGACTTTGCTCA
GAGCTCAGATTTCACTGGGGACCAGAGAATCTACGATTGTAGGAAGTCAAAAAATGGTTT
GCCCAGAGAGCTATCCTTGCAGAACCTTACCAGTCACTCCAACGAGAAACCTTACAAAGG
ACCTGAGTTTGGGAAAACCTTTAGTTCAAGCTGAATCTGATTTCCCATAAGAGGATTCAT
ATAGGTGGGAAACCTTAGAAATTTGCTGAGTGTGAGAAAGCCTTCTAGCAATGCTTGCCT
CTCCTCATTTGATGAGAATTTACATCAGAGGACACCATTTTACATGTCCCGTGTCAACAG
TGCCTCAGGCAGTATGTACATCTCATTGGATGTCAGAAAACCCAATTTGGGAGAAACCCC
AACAGGTGTGAAGAAAGCTTCTAACAGAACTATGACTTTCTTAGCCATCAGAGAAGCCAT
ACTGGTGAAAGTTTGTATTTATTTGTCTAGAATGTGGCAAAAGCATTGGTTGAAGAGCCT
TCTTGGGTTTGCAAGAAAAAAACCCAATCTGAGAAAAGACCTTATGAATTGTCTGAATGA
GAAAAGCTTCCGTCAATGATCAGCTCTTGTGGTACACCAGGGAACTCAGATAAGTGAAAA
ATCCTATACATACCTGGAGTCTGAAAAAAGCCTTGCTAGAAACCCTTACCTTATTGGGCC
CCAAAGAACTTACTCTGCAGAGAATTTTCTTCTAGTAAGAGATCTGACTGTGGACTGTGT
ATGTTTAATAGGCCTGAGAAGAATTATTCTCATAGTTAGTTGACCCATATAGTAGAGATG
ACTTTTAATGGAGTCAGTATGTAAACAGTTTGTTTTTAGATGCCCAGAAGCTTGTTCTGG
GAGGAGCTAGGGCAGGTCACAGAGACCTGATGGGTAACTCAGGTAAAGATGCTTTTCTTT
TATCTGAACCACTTCATGATTGCTTTACTTTCAGTTTTTAAAATTTGGAAATCCAATAAA
GGAAAGGACTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1084-1318, + strand, RNAz p=0.992852

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1084-1318, + strand, RNAz p=0.992852

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_199005, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_199005, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-854, gnl|bosTau2|chr28 (11333393-11332539)
               

               
               1-854, gnl|Hg17|chr9 (97040354-97039562)
               


               
               858-1331, gnl|bosTau2|chr28 (11332497-11332018)
               

               
               858-1331, gnl|Hg17|chr9 (97039555-97039098)
               

               
               858-1331, gnl|Mm7|chr13 (22721776-22721334)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-854, gnl|bosTau2|chr28 (11333393-11332539)
               

               
               1-854, gnl|Hg17|chr9 (97040354-97039562)
               


               
               858-1331, gnl|bosTau2|chr28 (11332497-11332018)
               

               
               858-1331, gnl|Hg17|chr9 (97039555-97039098)
               

               
               858-1331, gnl|Mm7|chr13 (22721776-22721334)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.133103)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	1-854, gnl\|bosTau2\|chr28 (11333393-11332539)
	1-854, gnl\|Hg17\|chr9 (97040354-97039562)

	858-1331, gnl\|bosTau2\|chr28 (11332497-11332018)
	858-1331, gnl\|Hg17\|chr9 (97039555-97039098)
	858-1331, gnl\|Mm7\|chr13 (22721776-22721334)