Ss1.1-Pig4-TMW8061P16.3
|
CATGAGTGTAAGCTGTGCAACCAGATGTTCGACTCCCCGGCCAAGCTCCTCTGTCACCTC
ATCGAGCACAGCTTCGAGGGCATGGGCGGCACCTTCAAATGCCCCGTGTGCTTCACAGTC
TTTGTCCAGGCCAACAAGTTGCAGCAACACATCTTTGCTGTGCACGGGCAGGAGGACAAG
ATCTACGACTGCTCCCAGTGCCCACAGAAGTTCTTCTTCCAGACAGAGCTGCAGAACCAC
ACGATGAGCCAGCACGCACAGTGAGGGACCGCTCGACAGGACACCTCTCCGCAGAAGGCT
TGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACATCCAATCAAAGTGTCATTTGC
AACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGA
AATGAATATTAATGGCAGAGATTAAAAGTATTCCATGCTCAGTATTTTTTATTGTCCTGC
TACAGCTAGTGTGCTTTTAGAGTTTCCGCCGCAGACTACATTTCTAGAGTTAGAGAAACC
CGCTTTTTGAGGCTATTGTCCTTTGTTCCTCCATGTATTATATTGATAGTTTTTTAAAAA
GGATTAGTGTGATTTTTTTTTCTTTGCTTCTTTTTTTTTTTTTTTTCTTTCTTGTTTTTC
TTTCCCCCCCTTCGGTTAACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGAT
GTGATTGCTTGGCTATTGTCTGAATATTTCCTTTTAATTTTTTAATTAAAGACTAATGCT
TTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTATGTAATGAATATAATCGGT
TTCAGTGCAACTGGATGGTCTGCTTTTAAATGTGACTTAATCTGACTGCAGTAACTAGTA
CAGTTCAATAAAGGGAATCCATGCGAATAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CATGAGTGTAAGCTGTGCAACCAGATGTTCGACTCCCCGGCCAAGCTCCTCTGTCACCTC
ATCGAGCACAGCTTCGAGGGCATGGGCGGCACCTTCAAATGCCCCGTGTGCTTCACAGTC
TTTGTCCAGGCCAACAAGTTGCAGCAACACATCTTTGCTGTGCACGGGCAGGAGGACAAG
ATCTACGACTGCTCCCAGTGCCCACAGAAGTTCTTCTTCCAGACAGAGCTGCAGAACCAC
ACGATGAGCCAGCACGCACAGTGAGGGACCGCTCGACAGGACACCTCTCCGCAGAAGGCT
TGCCGGAGACGCCGTGGGGAGGGCCATTTGAACATTACATCCAATCAAAGTGTCATTTGC
AACCCAGATGTAAAACTCTAATGATTTGGCCATGAGGCGCTGCTATTATAAGCAGCTGGA
AATGAATATTAATGGCAGAGATTAAAAGTATTCCATGCTCAGTATTTTTTATTGTCCTGC
TACAGCTAGTGTGCTTTTAGAGTTTCCGCCGCAGACTACATTTCTAGAGTTAGAGAAACC
CGCTTTTTGAGGCTATTGTCCTTTGTTCCTCCATGTATTATATTGATAGTTTTTTAAAAA
GGATTAGTGTGATTTTTTTTTCTTTGCTTCTTTTTTTTTTTTTTTTCTTTCTTGTTTTTC
TTTCCCCCCCTTCGGTTAACTACTTTTTAATTGCAATTCTAGGTAATTGTGCATCGTGAT
GTGATTGCTTGGCTATTGTCTGAATATTTCCTTTTAATTTTTTAATTAAAGACTAATGCT
TTGATTGGATTTGCCAGTTCACCGGACAGTGATTAAAACTATGTAATGAATATAATCGGT
TTCAGTGCAACTGGATGGTCTGCTTTTAAATGTGACTTAATCTGACTGCAGTAACTAGTA
CAGTTCAATAAAGGGAATCCATGCGAATAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-118, gnl|bosTau2|chr18 (20756687-20756804) |
|
1-118, gnl|canFam2|chr2 (68636563-68636416) |
|
1-118, gnl|danRer3|chr18 (17617893-17618035) |
|
1-118, gnl|dasNov1|scaffold_10267 (16209-16356) |
|
1-118, gnl|echTel1|scaffold_322352 (213377-213524) |
|
1-118, gnl|fr1|chrUn (326221097-326221239) |
|
1-118, gnl|galGal2|chr11 (7035326-7035176) |
|
1-118, gnl|hg17|chr16 (48116771-48116918) |
|
1-118, gnl|Hg17|chr16 (48116892-48116775) |
|
1-118, gnl|loxAfr1|scaffold_75463 (4920-5067) |
|
1-118, gnl|mm7|chr8 (86280050-86280197) |
|
1-118, gnl|Mm7|chr8 (86280171-86280054) |
|
1-118, gnl|monDom2|scaffold_35 (14149911-14150061) |
|
1-118, gnl|oryCun1|scaffold_211621 (7514-7661) |
|
1-118, gnl|panTro1|chrUn_random (11942854-11943001) |
|
1-118, gnl|rheMac2|chr20 (47721553-47721700) |
|
1-118, gnl|rn3|chr19 (20718555-20718408) |
|
1-118, gnl|tetNig1|chr15 (6603898-6604042) |
|
1-118, gnl|xenTro1|scaffold_410 (766906-767050) |
| |
|
230-932, gnl|bosTau2|chr18 (20789680-20790381) |
|
230-932, gnl|Hg17|chr16 (48082721-48082016) |
|
230-932, gnl|Mm7|chr8 (86252950-86252249) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-118, gnl|bosTau2|chr18 (20756687-20756804) |
|
1-118, gnl|canFam2|chr2 (68636563-68636416) |
|
1-118, gnl|danRer3|chr18 (17617893-17618035) |
|
1-118, gnl|dasNov1|scaffold_10267 (16209-16356) |
|
1-118, gnl|echTel1|scaffold_322352 (213377-213524) |
|
1-118, gnl|fr1|chrUn (326221097-326221239) |
|
1-118, gnl|galGal2|chr11 (7035326-7035176) |
|
1-118, gnl|hg17|chr16 (48116771-48116918) |
|
1-118, gnl|Hg17|chr16 (48116892-48116775) |
|
1-118, gnl|loxAfr1|scaffold_75463 (4920-5067) |
|
1-118, gnl|mm7|chr8 (86280050-86280197) |
|
1-118, gnl|Mm7|chr8 (86280171-86280054) |
|
1-118, gnl|monDom2|scaffold_35 (14149911-14150061) |
|
1-118, gnl|oryCun1|scaffold_211621 (7514-7661) |
|
1-118, gnl|panTro1|chrUn_random (11942854-11943001) |
|
1-118, gnl|rheMac2|chr20 (47721553-47721700) |
|
1-118, gnl|rn3|chr19 (20718555-20718408) |
|
1-118, gnl|tetNig1|chr15 (6603898-6604042) |
|
1-118, gnl|xenTro1|scaffold_410 (766906-767050) |
| |
|
230-932, gnl|bosTau2|chr18 (20789680-20790381) |
|
230-932, gnl|Hg17|chr16 (48082721-48082016) |
|
230-932, gnl|Mm7|chr8 (86252950-86252249) |
|
ece (0.229305) |
|
spc (0.226732) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
med (0.116252) |
|
ecc (0.115035) |
|
ece (0.229305) |
|
spc (0.226732) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
csp (0.161186) |
|
bla (0.124347) |
|
pgl (0.118483) |
|
med (0.116252) |
|
ecc (0.115035) |
