Non-Coding RNA Search

Ss1.1-Pig4-TMW8062A02.5

Sequence:


               
               CATGTCAGAGTCCCAGGAAAGGTTTTAATTCCAGTCCCTGAAATCCAGGAGGCAGACATC
ACGAGCAGCCTTGAGAGGATGACCTGGAGAGCCTGCCTTCTCACCTCTGGCAACAGCCAA
GACACACAGGCCCCCCAAATACAATTTCTGGCTCAGAGTTCCTGTGAAGCTGGACTCAGC
TCACTGACGTCAGTGACTGGGGAGCCGGGTCCCAGGGCAGCAGAAAAGATGTTGCTTTGG
CCGCTGCTCTGGCTTAAGACGAGGCGTGTCTTCATCAGAGAGGGCACCGAGGAGGCTGAC
CTTCTGAAGGGGGAGGAGGTGGGCTGGGTGGGGAGGGGGAGACAGTCTTGCCTGGCGAGG
GCAGCCCCAGGCCAAGCTGCACAGGCCCCCAGGAGGAGTCCAAGCCAGTGATGGCTGGAG
GGAAGGGCTGAGCAGCAGTGCGGGTGAGCCTCTGGGGCAGATCCTGCGGGGCCTGTCAGC
CTGCCTTTCTGCAGCAGGAAATTCAGATCCTGGATTTGGTGCCAGCTGCTCCAAGGGGCC
CCCTGCCTGGGAACAGCAGGGTCAAGGTCCATCTGATTTTCTCTTCTGAGGGGACACAGC
TGCCCTCGCCTTTTTGATCGCCGTCCAGTCTTCCAGGATGTCGATCTCCTGCAGCATGTA
CACGATATAAGGGCCAGACACGAGAGGGGCCTTCTTCCTCTTGCTGGGCGGCAGGGAGTC
CCAGGTCTTCGAGCTGCCTCGGGCGTGCAGCTTGTCATCCCACCACTCAGAGCTGATGTC
CAGGCTCTGGCGGTCCTCCTCCAGCCTCTGGATCCGCTCCTGCAGCTCCCCCTGCAGCGT
GTCGTAGAGCAGCAGCTTCTCGCTCTCCAGGTGCTGCCTGGCCCCCTGCAGCTCGCACTC
GTACTTGTTCCTGATCACGTCCAGGCAGAAGCCCTTGTAGATCCCTGCCACCTGAATTCG
AATCTTGAGGCTCCGCTGCAGCCCCCCGAGAGGCTCTGTGTACTCGGGCGCCCGCTCAGC
TCCCACCTCCTCCAGCCGCACCCGCAGCTGACTCAGCCGTTCCCTGAACAACTTCTCCTT
CAGCTCCGAGAACTGCTTCTCCAGGTCCAGCATCTCATTGACGCACTCGCTGCGGCGGCG
CTCGTAGTCCTCATCGTCCATCTCTGAGCTCTCCTCCTCGGACTCGGTCGGGCTGCCGCT
CCGTTCCTCCTCGCTCTCTTCCTCCTCCCCGTTCATCTCAGCAGCCGAGTCGCCCTCTGC
TTCCATCTCCTCTGCGTCTTTGCTCGGAGGCTGGACAGGCATCTGGGCTCCGTAGGTAGT
GGCGCTTCCAGCCTCACGTCTTAGATTCCCCAAGAGGTGCCGGAGGTTATCGGTACTGGC
TGCCGCTGTGGGGGTCCCGGAAGCGCCGCACCGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGTCAGAGTCCCAGGAAAGGTTTTAATTCCAGTCCCTGAAATCCAGGAGGCAGACATC
ACGAGCAGCCTTGAGAGGATGACCTGGAGAGCCTGCCTTCTCACCTCTGGCAACAGCCAA
GACACACAGGCCCCCCAAATACAATTTCTGGCTCAGAGTTCCTGTGAAGCTGGACTCAGC
TCACTGACGTCAGTGACTGGGGAGCCGGGTCCCAGGGCAGCAGAAAAGATGTTGCTTTGG
CCGCTGCTCTGGCTTAAGACGAGGCGTGTCTTCATCAGAGAGGGCACCGAGGAGGCTGAC
CTTCTGAAGGGGGAGGAGGTGGGCTGGGTGGGGAGGGGGAGACAGTCTTGCCTGGCGAGG
GCAGCCCCAGGCCAAGCTGCACAGGCCCCCAGGAGGAGTCCAAGCCAGTGATGGCTGGAG
GGAAGGGCTGAGCAGCAGTGCGGGTGAGCCTCTGGGGCAGATCCTGCGGGGCCTGTCAGC
CTGCCTTTCTGCAGCAGGAAATTCAGATCCTGGATTTGGTGCCAGCTGCTCCAAGGGGCC
CCCTGCCTGGGAACAGCAGGGTCAAGGTCCATCTGATTTTCTCTTCTGAGGGGACACAGC
TGCCCTCGCCTTTTTGATCGCCGTCCAGTCTTCCAGGATGTCGATCTCCTGCAGCATGTA
CACGATATAAGGGCCAGACACGAGAGGGGCCTTCTTCCTCTTGCTGGGCGGCAGGGAGTC
CCAGGTCTTCGAGCTGCCTCGGGCGTGCAGCTTGTCATCCCACCACTCAGAGCTGATGTC
CAGGCTCTGGCGGTCCTCCTCCAGCCTCTGGATCCGCTCCTGCAGCTCCCCCTGCAGCGT
GTCGTAGAGCAGCAGCTTCTCGCTCTCCAGGTGCTGCCTGGCCCCCTGCAGCTCGCACTC
GTACTTGTTCCTGATCACGTCCAGGCAGAAGCCCTTGTAGATCCCTGCCACCTGAATTCG
AATCTTGAGGCTCCGCTGCAGCCCCCCGAGAGGCTCTGTGTACTCGGGCGCCCGCTCAGC
TCCCACCTCCTCCAGCCGCACCCGCAGCTGACTCAGCCGTTCCCTGAACAACTTCTCCTT
CAGCTCCGAGAACTGCTTCTCCAGGTCCAGCATCTCATTGACGCACTCGCTGCGGCGGCG
CTCGTAGTCCTCATCGTCCATCTCTGAGCTCTCCTCCTCGGACTCGGTCGGGCTGCCGCT
CCGTTCCTCCTCGCTCTCTTCCTCCTCCCCGTTCATCTCAGCAGCCGAGTCGCCCTCTGC
TTCCATCTCCTCTGCGTCTTTGCTCGGAGGCTGGACAGGCATCTGGGCTCCGTAGGTAGT
GGCGCTTCCAGCCTCACGTCTTAGATTCCCCAAGAGGTGCCGGAGGTTATCGGTACTGGC
TGCCGCTGTGGGGGTCCCGGAAGCGCCGCACCGGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IAI2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IAI2_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               40-158, - strand, RNAz p=0.932696
               

               
               423-541, + strand, RNAz p=0.998263
               

               
               955-1072, - strand, RNAz p=0.730922

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-158, - strand, RNAz p=0.932696
               

               
               423-541, + strand, RNAz p=0.998263
               

               
               955-1072, - strand, RNAz p=0.730922

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015399, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015399, -

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-570, gnl|bosTau2|chr29 (37180404-37179850)
               

               
               1-570, gnl|Hg17|chr11 (65861376-65861937)
               

               
               1-570, gnl|Mm7|chr19 (4944728-4944212)
               


               
               944-1072, gnl|bosTau2|chr29 (37176785-37176657)
               

               
               944-1072, gnl|canFam2|chr18 (53996268-53996056)
               

               
               944-1072, gnl|danRer3|chr7 (45128056-45127889)
               

               
               944-1072, gnl|dasNov1|scaffold_39949 (15163-15351)
               

               
               944-1072, gnl|fr1|chrUn (199654098-199653906)
               

               
               944-1072, gnl|hg17|chr11 (65865212-65865407)
               

               
               944-1072, gnl|Hg17|chr11 (65865252-65865380)
               

               
               944-1072, gnl|loxAfr1|scaffold_22966 (3269-3085)
               

               
               944-1072, gnl|mm7|chr19 (4941357-4941176)
               

               
               944-1072, gnl|Mm7|chr19 (4941328-4941200)
               

               
               944-1072, gnl|panTro1|chr9 (67119868-67120063)
               

               
               944-1072, gnl|rheMac2|chr14 (8110976-8110780)
               

               
               944-1072, gnl|rn3|chr1 (207820561-207820378)
               

               
               944-1072, gnl|tetNig1|chr20 (785176-784960)
               

               
               944-1072, gnl|xenTro1|scaffold_521 (237082-237314)
               


               
               1164-1308, gnl|bosTau2|chr29 (37176338-37176194)
               

               
               1164-1308, gnl|Hg17|chr11 (65866143-65866287)
               

               
               1164-1308, gnl|Mm7|chr19 (4940844-4940700)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-570, gnl|bosTau2|chr29 (37180404-37179850)
               

               
               1-570, gnl|Hg17|chr11 (65861376-65861937)
               

               
               1-570, gnl|Mm7|chr19 (4944728-4944212)
               


               
               944-1072, gnl|bosTau2|chr29 (37176785-37176657)
               

               
               944-1072, gnl|canFam2|chr18 (53996268-53996056)
               

               
               944-1072, gnl|danRer3|chr7 (45128056-45127889)
               

               
               944-1072, gnl|dasNov1|scaffold_39949 (15163-15351)
               

               
               944-1072, gnl|fr1|chrUn (199654098-199653906)
               

               
               944-1072, gnl|hg17|chr11 (65865212-65865407)
               

               
               944-1072, gnl|Hg17|chr11 (65865252-65865380)
               

               
               944-1072, gnl|loxAfr1|scaffold_22966 (3269-3085)
               

               
               944-1072, gnl|mm7|chr19 (4941357-4941176)
               

               
               944-1072, gnl|Mm7|chr19 (4941328-4941200)
               

               
               944-1072, gnl|panTro1|chr9 (67119868-67120063)
               

               
               944-1072, gnl|rheMac2|chr14 (8110976-8110780)
               

               
               944-1072, gnl|rn3|chr1 (207820561-207820378)
               

               
               944-1072, gnl|tetNig1|chr20 (785176-784960)
               

               
               944-1072, gnl|xenTro1|scaffold_521 (237082-237314)
               


               
               1164-1308, gnl|bosTau2|chr29 (37176338-37176194)
               

               
               1164-1308, gnl|Hg17|chr11 (65866143-65866287)
               

               
               1164-1308, gnl|Mm7|chr19 (4940844-4940700)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               nmm (0.265604)
               

               
               cty (0.20816)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               cty (0.20816)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               med (0.116252)

	40-158, - strand, RNAz p=0.932696
	423-541, + strand, RNAz p=0.998263
	955-1072, - strand, RNAz p=0.730922

	1-570, gnl\|bosTau2\|chr29 (37180404-37179850)
	1-570, gnl\|Hg17\|chr11 (65861376-65861937)
	1-570, gnl\|Mm7\|chr19 (4944728-4944212)

	944-1072, gnl\|bosTau2\|chr29 (37176785-37176657)
	944-1072, gnl\|canFam2\|chr18 (53996268-53996056)
	944-1072, gnl\|danRer3\|chr7 (45128056-45127889)
	944-1072, gnl\|dasNov1\|scaffold_39949 (15163-15351)
	944-1072, gnl\|fr1\|chrUn (199654098-199653906)
	944-1072, gnl\|hg17\|chr11 (65865212-65865407)
	944-1072, gnl\|Hg17\|chr11 (65865252-65865380)
	944-1072, gnl\|loxAfr1\|scaffold_22966 (3269-3085)
	944-1072, gnl\|mm7\|chr19 (4941357-4941176)
	944-1072, gnl\|Mm7\|chr19 (4941328-4941200)
	944-1072, gnl\|panTro1\|chr9 (67119868-67120063)
	944-1072, gnl\|rheMac2\|chr14 (8110976-8110780)
	944-1072, gnl\|rn3\|chr1 (207820561-207820378)
	944-1072, gnl\|tetNig1\|chr20 (785176-784960)
	944-1072, gnl\|xenTro1\|scaffold_521 (237082-237314)

	1164-1308, gnl\|bosTau2\|chr29 (37176338-37176194)
	1164-1308, gnl\|Hg17\|chr11 (65866143-65866287)
	1164-1308, gnl\|Mm7\|chr19 (4940844-4940700)

	nmm (0.265604)
	cty (0.20816)
	eye (0.170503)
	nje (0.16592)
	csp (0.161186)
	cag (0.151194)
	ute (0.132784)
	med (0.116252)