Non-Coding RNA Search

Ss1.1-Pig4-TMW8062A03.3

Sequence:


               
               TCTTGTTGATGAATGATGACTGTGTTCAAGCTCAAAAAAATAAGGCTACGTCGTCGTAGA
ATTTCTTTAAACAAAGTTAAGACTGAACAGAGAGTGCTTTGGAATTGTTGCATAGGTCTA
CTAACTAGAAAGAGTATCTCTATTTGAAGAACAAAAGGCAAAGTTTTCATATGTGAGTCA
TTCGTTTCGCTGCAGCCGTACTTTCTCAACAAGTTTCTAAAGGATATGGGAATTCATTTT
GTATATGAAACTATAGACTGGAGCACCAGTGGTACTTCTGATTCACTTAAAGCTGCCAGG
GAAACTGAATATGATGAGAACAAGAGGAATGACTGGATCAAATTAATAGAAACAGATCTT
TTTGCAAGCCACATAATGATCCTGATCATCAGCCTTGAAAAGTAAATTAGAACAAGCAAA
TTGCTGTTGAAAAATTCTTTCAGCACTCTGCTGTTGCTACTCAGCTAGTCATGGCTCAGC
CAGAGGCAAGGAAAAAATGCATTCAGTTTTGCATTAACAAAGGAAACATTATTAAAGTGA
ATGTTTACATTGTGTTTACTGAAGTGTTCAAAGAATATTTGTTGCATCTTCAAGGAACAT
GCTGTTCTCCTATTACGTGCATGAGTGATAATAAAAATGAGTCATTTGTATATTTTAGAA
AAATAAATAATATTTAACTTAGGTGTTCCTGAGCTATCTTGACAATATTTAAGTGCCAAT
CTTAATACTTTCTCTTTTGAAGATTTTTGTCACTGGGAAAAAAGTTATGCTAATTAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTGTTGATGAATGATGACTGTGTTCAAGCTCAAAAAAATAAGGCTACGTCGTCGTAGA
ATTTCTTTAAACAAAGTTAAGACTGAACAGAGAGTGCTTTGGAATTGTTGCATAGGTCTA
CTAACTAGAAAGAGTATCTCTATTTGAAGAACAAAAGGCAAAGTTTTCATATGTGAGTCA
TTCGTTTCGCTGCAGCCGTACTTTCTCAACAAGTTTCTAAAGGATATGGGAATTCATTTT
GTATATGAAACTATAGACTGGAGCACCAGTGGTACTTCTGATTCACTTAAAGCTGCCAGG
GAAACTGAATATGATGAGAACAAGAGGAATGACTGGATCAAATTAATAGAAACAGATCTT
TTTGCAAGCCACATAATGATCCTGATCATCAGCCTTGAAAAGTAAATTAGAACAAGCAAA
TTGCTGTTGAAAAATTCTTTCAGCACTCTGCTGTTGCTACTCAGCTAGTCATGGCTCAGC
CAGAGGCAAGGAAAAAATGCATTCAGTTTTGCATTAACAAAGGAAACATTATTAAAGTGA
ATGTTTACATTGTGTTTACTGAAGTGTTCAAAGAATATTTGTTGCATCTTCAAGGAACAT
GCTGTTCTCCTATTACGTGCATGAGTGATAATAAAAATGAGTCATTTGTATATTTTAGAA
AAATAAATAATATTTAACTTAGGTGTTCCTGAGCTATCTTGACAATATTTAAGTGCCAAT
CTTAATACTTTCTCTTTTGAAGATTTTTGTCACTGGGAAAAAAGTTATGCTAATTAAAAC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-779, gnl|bosTau2|chr10 (46431724-46430927)
               

               
               1-779, gnl|Hg17|chr14 (56831365-56832192)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-779, gnl|bosTau2|chr10 (46431724-46430927)
               

               
               1-779, gnl|Hg17|chr14 (56831365-56832192)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               cte (0.29274)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	1-779, gnl\|bosTau2\|chr10 (46431724-46430927)
	1-779, gnl\|Hg17\|chr14 (56831365-56832192)

	cte (0.29274)
	lin (0.145603)
	lyg (0.133103)
	ret (0.128733)
	tra (0.123092)