Non-Coding RNA Search

Ss1.1-Pig4-TMW8062A06.5

Sequence:


               
               AGGAAAACTTCCTGGCCTGGGCTCCCGGCCGCTCAGTCGGCCACCCCTCCAATCCCGCCT
CCCGGTGCCCGGCGCTTCCCCACCCCTCCCCCGGCACCCCCAGTGTCCGCCATGGCCAAA
GCCTACGACCACCTCTTCAAGTTGCTGCTGATCGGGGACTCGGGGGTGGGCAAGACTTGT
CTGATCATTCGCTTTGCAGAGGACAACTTCAACAACACATACATCTCCACCATCGGAATT
GATTTCAAGATTCGCACTGTGGATATAGAGGGGAAAAAGATCAAACTGCAAGTCTGGGAC
ACGGCTGGCCAAGAGCGATTCAAGACGATAACTACCGCCTATTACCGTGGAGCCATGGGC
ATTATCCTAGTATATGACATCACAGATGAGAAATCCTTTGAGAACATTCAGAACTGGATG
AAGAGCATCAAAGAGAATGCCTCCGCTGGGGTAGAGCGCCTCTTACTGGGGAACAAGTGT
GACATGGAGGCCAAGAGGAAGGTACAGAAGGAGCAAGCCGATAAGTTGGCCCGGGAGCAT
GGAATCCGTTTTTTCGAGACAAGTGCCAAATCCAGTATGAACGTAGATGAGGCCTTTAGT
TCCCTGGCCCGGGACATCTTGCTCAAGTCAGGAGGCCGGAGATTGGGAAACAGCAACAAG
CCCCACAGCACTGACCTGAAAACTTGTGACAAGAAGAACACCAACAAGTGCTCCCTGGGC
TGAGGGCCCCTTTCTGCCTCCCCACCCTAAGCCTGGAGGCAGAACCTGAGGGAGGCAGGG
CGGAGGGGCTGGGCAGGGAGAAATAGCAAGTGGGGCTTGGAGGGATACAGATGGGTAGAT
GGCGGAAGAATAAGGAGAAAAGGGAGAATAAAAAAGGAGGGGGAGAGGAGGAAAAAGGGA
AGAAGGGGTAAGATAGAGAGGGAAGGAGAGGCAAGAAGGAGAAGAATTGAGAAAGTGAAA
GAGGGTGAGGAGGAGGTAGGAAGACAGGGAGGAGGAAAGGGAAGAGGGATGGCCTGAGGC
CTCAGACCTTCTCTGGGTTCCTGGGGCAAACATCAATGTAAATAAATGACTGACTTATTC
TGTTACTGGATCAGGCTTTAGGGCCCTGTGCAAGGCTGGCTCAGCACCACCTTCTGAAGG
TTTAGTCCAATCCTGTCACTCTGCATGGTCTTTTTCAGTATTAAAGGCCACCATTTGCAC
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAAACTTCCTGGCCTGGGCTCCCGGCCGCTCAGTCGGCCACCCCTCCAATCCCGCCT
CCCGGTGCCCGGCGCTTCCCCACCCCTCCCCCGGCACCCCCAGTGTCCGCCATGGCCAAA
GCCTACGACCACCTCTTCAAGTTGCTGCTGATCGGGGACTCGGGGGTGGGCAAGACTTGT
CTGATCATTCGCTTTGCAGAGGACAACTTCAACAACACATACATCTCCACCATCGGAATT
GATTTCAAGATTCGCACTGTGGATATAGAGGGGAAAAAGATCAAACTGCAAGTCTGGGAC
ACGGCTGGCCAAGAGCGATTCAAGACGATAACTACCGCCTATTACCGTGGAGCCATGGGC
ATTATCCTAGTATATGACATCACAGATGAGAAATCCTTTGAGAACATTCAGAACTGGATG
AAGAGCATCAAAGAGAATGCCTCCGCTGGGGTAGAGCGCCTCTTACTGGGGAACAAGTGT
GACATGGAGGCCAAGAGGAAGGTACAGAAGGAGCAAGCCGATAAGTTGGCCCGGGAGCAT
GGAATCCGTTTTTTCGAGACAAGTGCCAAATCCAGTATGAACGTAGATGAGGCCTTTAGT
TCCCTGGCCCGGGACATCTTGCTCAAGTCAGGAGGCCGGAGATTGGGAAACAGCAACAAG
CCCCACAGCACTGACCTGAAAACTTGTGACAAGAAGAACACCAACAAGTGCTCCCTGGGC
TGAGGGCCCCTTTCTGCCTCCCCACCCTAAGCCTGGAGGCAGAACCTGAGGGAGGCAGGG
CGGAGGGGCTGGGCAGGGAGAAATAGCAAGTGGGGCTTGGAGGGATACAGATGGGTAGAT
GGCGGAAGAATAAGGAGAAAAGGGAGAATAAAAAAGGAGGGGGAGAGGAGGAAAAAGGGA
AGAAGGGGTAAGATAGAGAGGGAAGGAGAGGCAAGAAGGAGAAGAATTGAGAAAGTGAAA
GAGGGTGAGGAGGAGGTAGGAAGACAGGGAGGAGGAAAGGGAAGAGGGATGGCCTGAGGC
CTCAGACCTTCTCTGGGTTCCTGGGGCAAACATCAATGTAAATAAATGACTGACTTATTC
TGTTACTGGATCAGGCTTTAGGGCCCTGTGCAAGGCTGGCTCAGCACCACCTTCTGAAGG
TTTAGTCCAATCCTGTCACTCTGCATGGTCTTTTTCAGTATTAAAGGCCACCATTTGCAC
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|40225607|gb|AAH09227.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40225607|gb|AAH09227.2|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               112-236, gnl|bosTau2|chr10 (31092930-31093054)
               

               
               112-236, gnl|Hg17|chr15 (61268877-61269001)
               

               
               112-236, gnl|Mm7|chr9 (66951099-66950975)
               


               
               293-435, gnl|bosTau2|chr11 (54646541-54646683)
               

               
               293-435, gnl|Hg17|chr2 (26244284-26244426)
               

               
               293-435, gnl|Mm7|chr12 (3175480-3175338)
               


               
               648-1203, gnl|bosTau2|chr3 (8161749-8161189)
               

               
               648-1203, gnl|Hg17|chr1 (150767723-150767200)
               

               
               648-1203, gnl|Mm7|chr3 (90356246-90356706)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-236, gnl|bosTau2|chr10 (31092930-31093054)
               

               
               112-236, gnl|Hg17|chr15 (61268877-61269001)
               

               
               112-236, gnl|Mm7|chr9 (66951099-66950975)
               


               
               293-435, gnl|bosTau2|chr11 (54646541-54646683)
               

               
               293-435, gnl|Hg17|chr2 (26244284-26244426)
               

               
               293-435, gnl|Mm7|chr12 (3175480-3175338)
               


               
               648-1203, gnl|bosTau2|chr3 (8161749-8161189)
               

               
               648-1203, gnl|Hg17|chr1 (150767723-150767200)
               

               
               648-1203, gnl|Mm7|chr3 (90356246-90356706)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               cte (0.29274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	112-236, gnl\|bosTau2\|chr10 (31092930-31093054)
	112-236, gnl\|Hg17\|chr15 (61268877-61269001)
	112-236, gnl\|Mm7\|chr9 (66951099-66950975)

	293-435, gnl\|bosTau2\|chr11 (54646541-54646683)
	293-435, gnl\|Hg17\|chr2 (26244284-26244426)
	293-435, gnl\|Mm7\|chr12 (3175480-3175338)

	648-1203, gnl\|bosTau2\|chr3 (8161749-8161189)
	648-1203, gnl\|Hg17\|chr1 (150767723-150767200)
	648-1203, gnl\|Mm7\|chr3 (90356246-90356706)

	cte (0.29274)
	nep (0.183925)
	gul (0.177588)
	eye (0.170503)
	nco (0.161734)
	cst (0.140036)
	nmm (0.132802)
	ese (0.126502)
	cly (0.120642)
	jca (0.11396)
	jej (0.0989218)