Ss1.1-Pig4-TMW8062A08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCACCTCGCAGAGCTCCGCAGAACCCGCCCAAGCGGGGCACGCGCGCCCCGGGCCTAG CCCCGGGGACTGCGTGGAGAAGCCCCTACCCGCCGCCTCCCGACCGCCGTTTGCGTGCTC GGCTTCCCCGGGCCCTCCGGGGGCGCCGGCGGGGTCGGGGACCTCGGCCTGGGCCCAGGG CGCTGGGAGCGCGGGCCGGCGGAGCTGGAAGCGCGGGTGCGGGGCAGGGGGAGTGCCGGA AGGGGGCGCTGGCGGGCGGCACCTCCCGTGCCCGCCAAGTCCCGCCCACGCGCAGGCAGC GCCTCTTCGGATTGGGCAGCGACCCCCGCGCCGTCGGGGCGGAGCGAGCGTCGTCGCGTC CGGGTGACGTCTCCCGCGGGCGTCGGGCGGGGTCGTCGGCGGCGGCGGTGGCGGCGGCGG CGGCGGCGGGTGGGAAATGGCGGAGTACTTGGCCTCCATCTTCGGCACCGAGAAAGACAA AGTCAACTGCTCATTTTATTTCAAAATTGGAGCATGTCGTCATGGAGACAGATGCTCTCG GTTGCACAATAAACCGACCTTTAGCCAGACCATTGCCCTCTTGAACATTTACCGTAACCC TCAAAACTCTTCCCAGTCTGCTGACGGTTTGCGCTGTGCCGTGAGCGATGTCGAGATGCA GGAGCACTATGACGAGTTCTTTGAGGAGGTCTTCACGGAGATGGAGGAGAAGTACGGCGA GGTGGAGGAGATGAACGTGTGTGACAACCTGGGCGACCACCTGGTCGGGAACGTCTATGT CAAGTTTCGCCGTGAAGAAGATGCGGAAAAGGCCGTGATTGACTTGAACAACCGCTGGTT TAACGGCCAGCCGATCCACGCCGAGCTCTCGCCCGTGACCGACTTCAGGGAAGCCTGCTG CCGTCAGTATGAGATGGGAGAGTGCACGCGAGGCGGCTTCTGCAACTTCATGCACCTGAA GCCCATCTCTAGAGAGCTGCGGCGGGAGCTCTACGGGCGCCGTCGCAAGAAGCATAGATC GAGGTCCCGCTCTCGGGAGCGCCGCTCTCGGTCTAGAGACCGTGGTCGTGGCGGTGGCGG CGGCGGCGGCGGCGGCGGGGGACGGGAGCGCGACAGGAGGCGGTCGAGAGATCGTGAACG ATCTGGGCGATTCTGAGCCAGGCCATTTTTACCGTATGTCTGCTAGAAAGTGTTGTAGTT GATTGACCAAACAAGTTCATAATGGGAATTTTTTTAAAAAACAACAAAAAAATACAAAGA TGGGTTTCTGAATAAAATTTGTAGTGATACAGTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCACCTCGCAGAGCTCCGCAGAACCCGCCCAAGCGGGGCACGCGCGCCCCGGGCCTAG CCCCGGGGACTGCGTGGAGAAGCCCCTACCCGCCGCCTCCCGACCGCCGTTTGCGTGCTC GGCTTCCCCGGGCCCTCCGGGGGCGCCGGCGGGGTCGGGGACCTCGGCCTGGGCCCAGGG CGCTGGGAGCGCGGGCCGGCGGAGCTGGAAGCGCGGGTGCGGGGCAGGGGGAGTGCCGGA AGGGGGCGCTGGCGGGCGGCACCTCCCGTGCCCGCCAAGTCCCGCCCACGCGCAGGCAGC GCCTCTTCGGATTGGGCAGCGACCCCCGCGCCGTCGGGGCGGAGCGAGCGTCGTCGCGTC CGGGTGACGTCTCCCGCGGGCGTCGGGCGGGGTCGTCGGCGGCGGCGGTGGCGGCGGCGG CGGCGGCGGGTGGGAAATGGCGGAGTACTTGGCCTCCATCTTCGGCACCGAGAAAGACAA AGTCAACTGCTCATTTTATTTCAAAATTGGAGCATGTCGTCATGGAGACAGATGCTCTCG GTTGCACAATAAACCGACCTTTAGCCAGACCATTGCCCTCTTGAACATTTACCGTAACCC TCAAAACTCTTCCCAGTCTGCTGACGGTTTGCGCTGTGCCGTGAGCGATGTCGAGATGCA GGAGCACTATGACGAGTTCTTTGAGGAGGTCTTCACGGAGATGGAGGAGAAGTACGGCGA GGTGGAGGAGATGAACGTGTGTGACAACCTGGGCGACCACCTGGTCGGGAACGTCTATGT CAAGTTTCGCCGTGAAGAAGATGCGGAAAAGGCCGTGATTGACTTGAACAACCGCTGGTT TAACGGCCAGCCGATCCACGCCGAGCTCTCGCCCGTGACCGACTTCAGGGAAGCCTGCTG CCGTCAGTATGAGATGGGAGAGTGCACGCGAGGCGGCTTCTGCAACTTCATGCACCTGAA GCCCATCTCTAGAGAGCTGCGGCGGGAGCTCTACGGGCGCCGTCGCAAGAAGCATAGATC GAGGTCCCGCTCTCGGGAGCGCCGCTCTCGGTCTAGAGACCGTGGTCGTGGCGGTGGCGG CGGCGGCGGCGGCGGCGGGGGACGGGAGCGCGACAGGAGGCGGTCGAGAGATCGTGAACG ATCTGGGCGATTCTGAGCCAGGCCATTTTTACCGTATGTCTGCTAGAAAGTGTTGTAGTT GATTGACCAAACAAGTTCATAATGGGAATTTTTTTAAAAAACAACAAAAAAATACAAAGA TGGGTTTCTGAATAAAATTTGTAGTGATACAGTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 3-480, gnl|bosTau2|chr28 (9947216-9946724) | |
| 3-480, gnl|Hg17|chr21 (43401103-43400630) | |
| 783-918, gnl|bosTau2|chr18 (36890969-36890834) | |
| 783-918, gnl|canFam2|chr1 (119799260-119799116) | |
| 783-918, gnl|danRer3|chr9 (11146518-11146662) | |
| 783-918, gnl|dasNov1|scaffold_39176 (1692-1566) | |
| 783-918, gnl|echTel1|scaffold_314012 (46713-46857) | |
| 783-918, gnl|fr1|chrUn (36298942-36298792) | |
| 783-918, gnl|hg17|chr19 (40926748-40926892) | |
| 783-918, gnl|Hg17|chr19 (40926888-40926753) | |
| 783-918, gnl|loxAfr1|scaffold_24268 (16393-16252) | |
| 783-918, gnl|mm7|chr7 (27505837-27505693) | |
| 783-918, gnl|Mm7|chr7 (27505695-27505830) | |
| 783-918, gnl|monDom2|scaffold_139 (1888614-1888758) | |
| 783-918, gnl|oryCun1|scaffold_82420 (3599-3743) | |
| 783-918, gnl|panTro1|chr20 (37758785-37758929) | |
| 783-918, gnl|rheMac2|chr19 (42226586-42226730) | |
| 783-918, gnl|rn3|chr1 (85687866-85687722) | |
| 783-918, gnl|tetNig1|chr2 (9368364-9368224) | |
| 783-918, gnl|xenTro1|scaffold_192 (772765-772621) | |
| 1012-1293, gnl|bosTau2|chr28 (9934116-9933840) | |
| 1012-1293, gnl|Hg17|chr21 (43386428-43386136) | |
| 1012-1293, gnl|Mm7|chr17 (29838278-29838005) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-480, gnl|bosTau2|chr28 (9947216-9946724) | |
| 3-480, gnl|Hg17|chr21 (43401103-43400630) | |
| 783-918, gnl|bosTau2|chr18 (36890969-36890834) | |
| 783-918, gnl|canFam2|chr1 (119799260-119799116) | |
| 783-918, gnl|danRer3|chr9 (11146518-11146662) | |
| 783-918, gnl|dasNov1|scaffold_39176 (1692-1566) | |
| 783-918, gnl|echTel1|scaffold_314012 (46713-46857) | |
| 783-918, gnl|fr1|chrUn (36298942-36298792) | |
| 783-918, gnl|hg17|chr19 (40926748-40926892) | |
| 783-918, gnl|Hg17|chr19 (40926888-40926753) | |
| 783-918, gnl|loxAfr1|scaffold_24268 (16393-16252) | |
| 783-918, gnl|mm7|chr7 (27505837-27505693) | |
| 783-918, gnl|Mm7|chr7 (27505695-27505830) | |
| 783-918, gnl|monDom2|scaffold_139 (1888614-1888758) | |
| 783-918, gnl|oryCun1|scaffold_82420 (3599-3743) | |
| 783-918, gnl|panTro1|chr20 (37758785-37758929) | |
| 783-918, gnl|rheMac2|chr19 (42226586-42226730) | |
| 783-918, gnl|rn3|chr1 (85687866-85687722) | |
| 783-918, gnl|tetNig1|chr2 (9368364-9368224) | |
| 783-918, gnl|xenTro1|scaffold_192 (772765-772621) | |
| 1012-1293, gnl|bosTau2|chr28 (9934116-9933840) | |
| 1012-1293, gnl|Hg17|chr21 (43386428-43386136) | |
| 1012-1293, gnl|Mm7|chr17 (29838278-29838005) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| cag (0.755972) | |
| fbs (0.526039) | |
| pty (0.428143) | |
| nca (0.410621) | |
| nbm (0.397298) | |
| cbr (0.383926) | |
| eru (0.360144) | |
| sto (0.359648) | |
| ecc (0.345105) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cli (0.305623) | |
| eje (0.296501) | |
| lnt (0.284616) | |
| cst (0.280073) | |
| cga (0.279096) | |
| med (0.232504) | |
| fli (0.202881) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| eli (0.151814) | |
| isp (0.150376) | |
| kid (0.129735) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jej (0.0989218) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.755972) | |
| fbs (0.526039) | |
| pty (0.428143) | |
| nca (0.410621) | |
| nbm (0.397298) | |
| cbr (0.383926) | |
| eru (0.360144) | |
| sto (0.359648) | |
| ecc (0.345105) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cli (0.305623) | |
| eje (0.296501) | |
| lnt (0.284616) | |
| cst (0.280073) | |
| cga (0.279096) | |
| med (0.232504) | |
| fli (0.202881) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| eli (0.151814) | |
| isp (0.150376) | |
| kid (0.129735) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| jej (0.0989218) |