Non-Coding RNA Search

Ss1.1-Pig4-TMW8062A10.5

Sequence:


               
               TTCGGAGCCGGTCATGGAACAGCCAGGCAGTTCAAGCCCTAGCGGCGGAGGTCCTGTACC
GGAGAAGTCAGCCCCGGCCTCGGTGACCCTGGCGCGTCTTCTGCAGCTGGTGCAGCAGGG
CCAGGAGCTTCCGGGCCTGGAGAGGCCTCTTGTCGCGGCGACCCTCAGCGAACCCACGGC
GTCCCAGCTCCCGCGGAGGCCCAAGCCCTGGGAGGTCTCAGCCGAGGCCCCAGGGCCGCC
CTTCCAGACCGCGGGCCACAGGCCTGCCGACCCTCCCTGTGGGCAGAGGAATCGCCTGGA
GGAGCCTGACTCGGAGAAGGGTACTACCGGCGCCTTACTAGGTGGAACTTAGTGGATTCT
TGAGGTTTGAGATCCTTTATAGCTGTGAATGAAAAACGCCTGTCAAATCTGCGAGGGATG
CTGCAGTCGTGAAGCCATCAGCCAATACTGCCGCCCACCCAGCGGTGGAGACAGATGGCT
GCCTGCTGCCAAGCCCTGAGCCACTGCGGCCACCCCGACGGGGGCACACTGAGGGAACTG
AGACTGGGAACAAACAGGATGCTGGCTCTGGAAAGCCAAGGTGCATATCAAAGGAATGAT
TTAAGTGAGCCCAGACTCTGGCATCTTCCCATACATTGAAAAGTGCTAAATTCATTAACT
TGAGATGTCTGGTTTTCTTTAATTAACATTACTCTTTTGATGGTCTGACTACCTGGTTTT
TGTTGGAAAACTCCTGTATATCCTGGCTTCTCCCTTAGCTCTTTGGAGCTATTTGCGAGG
CTGCCTCCTGGCCTTGAGTCCTCAGAAAGTCCACCAAATAAAGCATAATTTTCAAGTTAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGGAGCCGGTCATGGAACAGCCAGGCAGTTCAAGCCCTAGCGGCGGAGGTCCTGTACC
GGAGAAGTCAGCCCCGGCCTCGGTGACCCTGGCGCGTCTTCTGCAGCTGGTGCAGCAGGG
CCAGGAGCTTCCGGGCCTGGAGAGGCCTCTTGTCGCGGCGACCCTCAGCGAACCCACGGC
GTCCCAGCTCCCGCGGAGGCCCAAGCCCTGGGAGGTCTCAGCCGAGGCCCCAGGGCCGCC
CTTCCAGACCGCGGGCCACAGGCCTGCCGACCCTCCCTGTGGGCAGAGGAATCGCCTGGA
GGAGCCTGACTCGGAGAAGGGTACTACCGGCGCCTTACTAGGTGGAACTTAGTGGATTCT
TGAGGTTTGAGATCCTTTATAGCTGTGAATGAAAAACGCCTGTCAAATCTGCGAGGGATG
CTGCAGTCGTGAAGCCATCAGCCAATACTGCCGCCCACCCAGCGGTGGAGACAGATGGCT
GCCTGCTGCCAAGCCCTGAGCCACTGCGGCCACCCCGACGGGGGCACACTGAGGGAACTG
AGACTGGGAACAAACAGGATGCTGGCTCTGGAAAGCCAAGGTGCATATCAAAGGAATGAT
TTAAGTGAGCCCAGACTCTGGCATCTTCCCATACATTGAAAAGTGCTAAATTCATTAACT
TGAGATGTCTGGTTTTCTTTAATTAACATTACTCTTTTGATGGTCTGACTACCTGGTTTT
TGTTGGAAAACTCCTGTATATCCTGGCTTCTCCCTTAGCTCTTTGGAGCTATTTGCGAGG
CTGCCTCCTGGCCTTGAGTCCTCAGAAAGTCCACCAAATAAAGCATAATTTTCAAGTTAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61865107|ref|XP_591396.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865107|ref|XP_591396.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               716-821, - strand, RNAz p=0.539988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               716-821, - strand, RNAz p=0.539988

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               66-314, gnl|bosTau2|chr23 (12980922-12980668)
               

               
               66-314, gnl|Hg17|chr6 (42966467-42966246)
               

               
               66-314, gnl|Mm7|chr17 (44901890-44902142)
               


               
               457-851, gnl|bosTau2|chr21 (9199758-9200167)
               


               
               467-845, gnl|bosTau2|chr10 (50565457-50565852)
               


               
               477-838, gnl|bosTau2|chr10 (41118237-41118608)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-314, gnl|bosTau2|chr23 (12980922-12980668)
               

               
               66-314, gnl|Hg17|chr6 (42966467-42966246)
               

               
               66-314, gnl|Mm7|chr17 (44901890-44902142)
               


               
               457-851, gnl|bosTau2|chr21 (9199758-9200167)
               


               
               467-845, gnl|bosTau2|chr10 (50565457-50565852)
               


               
               477-838, gnl|bosTau2|chr10 (41118237-41118608)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               fce (0.543183)
               

               
               fty (0.351679)
               

               
               lnt (0.284616)
               

               
               thg (0.253582)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fty (0.351679)
               

               
               lnt (0.284616)
               

               
               thg (0.253582)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	66-314, gnl\|bosTau2\|chr23 (12980922-12980668)
	66-314, gnl\|Hg17\|chr6 (42966467-42966246)
	66-314, gnl\|Mm7\|chr17 (44901890-44902142)

	457-851, gnl\|bosTau2\|chr21 (9199758-9200167)

	467-845, gnl\|bosTau2\|chr10 (50565457-50565852)

	477-838, gnl\|bosTau2\|chr10 (41118237-41118608)

	fce (0.543183)
	fty (0.351679)
	lnt (0.284616)
	thg (0.253582)
	duo (0.172801)
	eye (0.170503)
	cje (0.165235)
	pla (0.133672)
	nmm (0.132802)
	pgl (0.118483)
	jca (0.11396)
	jej (0.0989218)