Non-Coding RNA Search

Ss1.1-Pig4-TMW8062A12.3

Sequence:


               
               GGACACAGTTCCCTGTGCTGTACAGTAGGACCTCATTGCTTCTCTAGTCTAAATATAATA
GTTTGCATCTACCAACCCCAAACTTCCCATCCATCCCATTCCCTCCCCTCCCCACCTGGC
AACCACAAATTTGTTCTCCATGTCTGTGAGTATATTTCTGTTTTGATATCCTTTTCTATT
TTTTTTCTATTGAATACCTCTCTGTATCCAGTTCTATCTTGTCCATTCACCTGTAGTAAA
GATCCTAAGTCAGCAGCACAAACATTTTACAAATATTTGTCAGCTGCTCTATCTGTACAT
TTTCTTCTGTATAAAAGGTATAGTCTTTTGAAAATTATTTTAATGGCATTTTTCTCAAAT
AGCTCACATTCAAATTAAATGTAATAAACAAATACACGTGGTAAGTGTGCAGCTAAATCT
TTCAAGGGAAATGAAACAAAAATACCTCTGGACTCTTTCCTTACTTTGATTTCTTAGAAA
TTGATTCTTCCCAAGAAATTCCTTGAAATATGTTTAAGGCCATCTCATTAGGCCAGAATA
TGTGCAAGAGGATCCAAATCTTAAATTAAATTCTGTAAGTAAATCAACCACATTCATAAA
ACTTCTAGTGGCAATTACCATTGGCATTTTGTTTACTCTGAACAAACAAAAGATATATTA
ACATTCAATGTTATTAGATGGCATGTCTTTAAAAAGGGAGGGTTTGGCAATAATATATCT
ATTGAATGTAGGATAATCAAATGTGTTTAAAAATTAAGCCTCTTTACCTTCATTTCTTTG
TGAGAAAATTGTATTGTTATTTACATATTAAAATTTTTATTACCCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACACAGTTCCCTGTGCTGTACAGTAGGACCTCATTGCTTCTCTAGTCTAAATATAATA
GTTTGCATCTACCAACCCCAAACTTCCCATCCATCCCATTCCCTCCCCTCCCCACCTGGC
AACCACAAATTTGTTCTCCATGTCTGTGAGTATATTTCTGTTTTGATATCCTTTTCTATT
TTTTTTCTATTGAATACCTCTCTGTATCCAGTTCTATCTTGTCCATTCACCTGTAGTAAA
GATCCTAAGTCAGCAGCACAAACATTTTACAAATATTTGTCAGCTGCTCTATCTGTACAT
TTTCTTCTGTATAAAAGGTATAGTCTTTTGAAAATTATTTTAATGGCATTTTTCTCAAAT
AGCTCACATTCAAATTAAATGTAATAAACAAATACACGTGGTAAGTGTGCAGCTAAATCT
TTCAAGGGAAATGAAACAAAAATACCTCTGGACTCTTTCCTTACTTTGATTTCTTAGAAA
TTGATTCTTCCCAAGAAATTCCTTGAAATATGTTTAAGGCCATCTCATTAGGCCAGAATA
TGTGCAAGAGGATCCAAATCTTAAATTAAATTCTGTAAGTAAATCAACCACATTCATAAA
ACTTCTAGTGGCAATTACCATTGGCATTTTGTTTACTCTGAACAAACAAAAGATATATTA
ACATTCAATGTTATTAGATGGCATGTCTTTAAAAAGGGAGGGTTTGGCAATAATATATCT
ATTGAATGTAGGATAATCAAATGTGTTTAAAAATTAAGCCTCTTTACCTTCATTTCTTTG
TGAGAAAATTGTATTGTTATTTACATATTAAAATTTTTATTACCCTCA

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-165, gnl|bosTau2|chr4 (38935424-38935258)
               


               
               173-825, gnl|bosTau2|chr24 (17383365-17383995)
               

               
               173-825, gnl|Hg17|chr18 (29682299-29681658)
               

               
               173-825, gnl|Mm7|chr18 (23065768-23065161)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-165, gnl|bosTau2|chr4 (38935424-38935258)
               


               
               173-825, gnl|bosTau2|chr24 (17383365-17383995)
               

               
               173-825, gnl|Hg17|chr18 (29682299-29681658)
               

               
               173-825, gnl|Mm7|chr18 (23065768-23065161)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fce (0.271592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	1-165, gnl\|bosTau2\|chr4 (38935424-38935258)

	173-825, gnl\|bosTau2\|chr24 (17383365-17383995)
	173-825, gnl\|Hg17\|chr18 (29682299-29681658)
	173-825, gnl\|Mm7\|chr18 (23065768-23065161)