Ss1.1-Pig4-TMW8062A15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTGGATGAATTCATGGAGGCAGTTTCTTCCAAGTATGGCATGAATTGCCTTATTCA GTTTGAAGATTTTGCCAATATAAATGCATTTCGTCTCCTGAAAAAGTATCAGAATCAGTA TTGCACATTCAACGATGATATTCAAGGAACGGCATCTGTTGCGGTTGCTGGCATCCTTGC AGCCCTTCGAATCACCAAGAACAAGCTTTCTGATCAAACGATACTGTTCCAAGGAGCTGG AGAGGCTGCCTTAGGGATTGCACACCTGATTGTTATGGCCATGGAAAAAGAAGGTGTCCC AAAAGAGAAAGCCATAAAGAAGATATGGTTGGTTGACTCAAAAGGATTAATAGTTAAGGG ACGGGCTGCCTTAACACACGAGAAAGAGGAATTTGCCCATGAACATGAAGAAATGAAGAA CCTAGAAGCCATTGTTCAAGATATAAAACCAACAGCCCTCATAGGAGTTGCTGCGATTGG TGGTGCATTTTCAGAACAAATTCTCAAAGACATGGCTGCCTTCAATGAACGGCCTATTAT TTTTGCTTTGAGTAATCCAACCAGCAAAGCAGAATGTACTGCAGAGCAGTGCTACACACT GACACAGGGTCGTGCAATTTTTGCCAGTGGCAGTCCTTTTGATCCGGTCACTCTTCCAAG TGGGCAGACCCTGTATCCTGGCCAAGGCAACAATTCCTATGTGTTTCCTGGAGTTGCCCT TGGTGTTGTGGCCTGTGGACTGAGGCATATCACGGATAAGATCTTTCTCACTACTGCTGA GGTTATAGCTCAGCAAGTATCAGATAAACACTTGGAAGAAGGCCGGCTTTATCCTCCTCT GAACACCATTAGAGATGTTTCTCTGAAAATCGCAGAAAAGATTGTGAGAGATGCATACCA AGAAAAGACAGCCACCATTTATCCTGAACCCTCAAACAAGGAAGCATTTGTCCGCTCTCA GATGTATAGCACTGATTATGACCAGATTCTACCTGATGGCTATTCTTGGCCTGAAGAGGC CCAGAAAATACAGACCAAACTTGACTAATAGCGTAATAGCCTACATTTCTAACTCCACTC ATGAGATCTGGAAGTCTTTCATAATTTTTAAATATTGGGATCTTTTATAATGAGTCATAA TGTGCTAGATTAAGATAATTTCCCCTTAACACTCTAAAAATTTATGGACGATTATTGTTA TACTTTAGGGTAAACATCACAGTAGACACTTTTGCTTCATTTACTTTCTTGTTATTTATG GTTTCTGTCTTAATTATTTTGCCCAAGTTCTCTTTAAAAGCTATTGTAACTGCTACTGAG AAACCCTTTTCATAGAGGAAACTAAGGGGAAGACCAAAATTAGTAATAAAATGGTATGAT CAGTATTAAAACAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTGGATGAATTCATGGAGGCAGTTTCTTCCAAGTATGGCATGAATTGCCTTATTCA GTTTGAAGATTTTGCCAATATAAATGCATTTCGTCTCCTGAAAAAGTATCAGAATCAGTA TTGCACATTCAACGATGATATTCAAGGAACGGCATCTGTTGCGGTTGCTGGCATCCTTGC AGCCCTTCGAATCACCAAGAACAAGCTTTCTGATCAAACGATACTGTTCCAAGGAGCTGG AGAGGCTGCCTTAGGGATTGCACACCTGATTGTTATGGCCATGGAAAAAGAAGGTGTCCC AAAAGAGAAAGCCATAAAGAAGATATGGTTGGTTGACTCAAAAGGATTAATAGTTAAGGG ACGGGCTGCCTTAACACACGAGAAAGAGGAATTTGCCCATGAACATGAAGAAATGAAGAA CCTAGAAGCCATTGTTCAAGATATAAAACCAACAGCCCTCATAGGAGTTGCTGCGATTGG TGGTGCATTTTCAGAACAAATTCTCAAAGACATGGCTGCCTTCAATGAACGGCCTATTAT TTTTGCTTTGAGTAATCCAACCAGCAAAGCAGAATGTACTGCAGAGCAGTGCTACACACT GACACAGGGTCGTGCAATTTTTGCCAGTGGCAGTCCTTTTGATCCGGTCACTCTTCCAAG TGGGCAGACCCTGTATCCTGGCCAAGGCAACAATTCCTATGTGTTTCCTGGAGTTGCCCT TGGTGTTGTGGCCTGTGGACTGAGGCATATCACGGATAAGATCTTTCTCACTACTGCTGA GGTTATAGCTCAGCAAGTATCAGATAAACACTTGGAAGAAGGCCGGCTTTATCCTCCTCT GAACACCATTAGAGATGTTTCTCTGAAAATCGCAGAAAAGATTGTGAGAGATGCATACCA AGAAAAGACAGCCACCATTTATCCTGAACCCTCAAACAAGGAAGCATTTGTCCGCTCTCA GATGTATAGCACTGATTATGACCAGATTCTACCTGATGGCTATTCTTGGCCTGAAGAGGC CCAGAAAATACAGACCAAACTTGACTAATAGCGTAATAGCCTACATTTCTAACTCCACTC ATGAGATCTGGAAGTCTTTCATAATTTTTAAATATTGGGATCTTTTATAATGAGTCATAA TGTGCTAGATTAAGATAATTTCCCCTTAACACTCTAAAAATTTATGGACGATTATTGTTA TACTTTAGGGTAAACATCACAGTAGACACTTTTGCTTCATTTACTTTCTTGTTATTTATG GTTTCTGTCTTAATTATTTTGCCCAAGTTCTCTTTAAAAGCTATTGTAACTGCTACTGAG AAACCCTTTTCATAGAGGAAACTAAGGGGAAGACCAAAATTAGTAATAAAATGGTATGAT CAGTATTAAAACAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 34-147, gnl|bosTau2|chr9 (10154555-10154442) | |
| 34-147, gnl|canFam2|chr12 (46671443-46671563) | |
| 34-147, gnl|danRer3|chr9 (31103501-31103619) | |
| 34-147, gnl|dasNov1|scaffold_201479 (1124-1004) | |
| 34-147, gnl|echTel1|scaffold_303702 (8555-8674) | |
| 34-147, gnl|fr1|chrUn (264607731-264607849) | |
| 34-147, gnl|hg17|chr6 (84020065-84020185) | |
| 34-147, gnl|Hg17|chr6 (84020179-84020066) | |
| 34-147, gnl|loxAfr1|scaffold_19204 (43512-43392) | |
| 34-147, gnl|mm7|chr9 (86723078-86723198) | |
| 34-147, gnl|Mm7|chr9 (86723192-86723079) | |
| 34-147, gnl|monDom2|scaffold_0 (146845967-146845847) | |
| 34-147, gnl|oryCun1|scaffold_65326 (416-296) | |
| 34-147, gnl|panTro1|chr5 (85656809-85656929) | |
| 34-147, gnl|rheMac2|chr4 (79280177-79280297) | |
| 34-147, gnl|rn3|chr8 (91894861-91894981) | |
| 34-147, gnl|tetNig1|chrUn_random (99878907-99878793) | |
| 34-147, gnl|xenTro1|scaffold_73 (2306956-2306836) | |
| 243-359, gnl|bosTau2|chr9 (10141730-10141614) | |
| 243-359, gnl|canFam2|chr12 (46657221-46657371) | |
| 243-359, gnl|danRer3|chr9 (31102173-31102317) | |
| 243-359, gnl|dasNov1|scaffold_6982 (44796-44646) | |
| 243-359, gnl|echTel1|scaffold_276803 (46113-46263) | |
| 243-359, gnl|fr1|chrUn (264607349-264607476) | |
| 243-359, gnl|hg17|chr6 (84004149-84004293) | |
| 243-359, gnl|Hg17|chr6 (84004270-84004154) | |
| 243-359, gnl|loxAfr1|scaffold_66439 (5801-5648) | |
| 243-359, gnl|mm7|chr9 (86715202-86715352) | |
| 243-359, gnl|Mm7|chr9 (86715323-86715207) | |
| 243-359, gnl|monDom2|scaffold_0 (146862288-146862122) | |
| 243-359, gnl|oryCun1|scaffold_206418 (44641-44490) | |
| 243-359, gnl|panTro1|chr5 (85640737-85640881) | |
| 243-359, gnl|rheMac2|chr4 (79266890-79267034) | |
| 243-359, gnl|rn3|chr8 (91886808-91886958) | |
| 243-359, gnl|tetNig1|chrUn_random (99879297-99879174) | |
| 605-783, gnl|bosTau2|chr29 (5518153-5517975) | |
| 605-783, gnl|canFam2|chr21 (16098719-16098490) | |
| 605-783, gnl|danRer3|chr9 (31099197-31099375) | |
| 605-783, gnl|dasNov1|scaffold_65204 (5255-5436) | |
| 605-783, gnl|echTel1|scaffold_310221 (3108-2884) | |
| 605-783, gnl|fr1|chrUn (203908918-203909124) | |
| 605-783, gnl|galGal2|chr1 (180679205-180678998) | |
| 605-783, gnl|hg17|chr11 (85834982-85835207) | |
| 605-783, gnl|Hg17|chr11 (85835180-85835002) | |
| 605-783, gnl|loxAfr1|scaffold_57570 (8301-8077) | |
| 605-783, gnl|mm7|chr7 (85798190-85797965) | |
| 605-783, gnl|Mm7|chr7 (85797990-85798168) | |
| 605-783, gnl|monDom2|scaffold_46 (1155531-1155312) | |
| 605-783, gnl|oryCun1|scaffold_130123 (10839-11064) | |
| 605-783, gnl|panTro1|chr9 (87488503-87488728) | |
| 605-783, gnl|rheMac2|chr14 (84771167-84771392) | |
| 605-783, gnl|rn3|chr1 (146497777-146497552) | |
| 605-783, gnl|tetNig1|chr2 (9258839-9258636) | |
| 605-783, gnl|xenTro1|scaffold_195 (1447274-1447063) | |
| 879-1391, gnl|bosTau2|chr9 (10118262-10117761) | |
| 879-1391, gnl|Hg17|chr6 (83978534-83978019) | |
| 879-1391, gnl|Mm7|chr9 (86686264-86685743) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-147, gnl|bosTau2|chr9 (10154555-10154442) | |
| 34-147, gnl|canFam2|chr12 (46671443-46671563) | |
| 34-147, gnl|danRer3|chr9 (31103501-31103619) | |
| 34-147, gnl|dasNov1|scaffold_201479 (1124-1004) | |
| 34-147, gnl|echTel1|scaffold_303702 (8555-8674) | |
| 34-147, gnl|fr1|chrUn (264607731-264607849) | |
| 34-147, gnl|hg17|chr6 (84020065-84020185) | |
| 34-147, gnl|Hg17|chr6 (84020179-84020066) | |
| 34-147, gnl|loxAfr1|scaffold_19204 (43512-43392) | |
| 34-147, gnl|mm7|chr9 (86723078-86723198) | |
| 34-147, gnl|Mm7|chr9 (86723192-86723079) | |
| 34-147, gnl|monDom2|scaffold_0 (146845967-146845847) | |
| 34-147, gnl|oryCun1|scaffold_65326 (416-296) | |
| 34-147, gnl|panTro1|chr5 (85656809-85656929) | |
| 34-147, gnl|rheMac2|chr4 (79280177-79280297) | |
| 34-147, gnl|rn3|chr8 (91894861-91894981) | |
| 34-147, gnl|tetNig1|chrUn_random (99878907-99878793) | |
| 34-147, gnl|xenTro1|scaffold_73 (2306956-2306836) | |
| 243-359, gnl|bosTau2|chr9 (10141730-10141614) | |
| 243-359, gnl|canFam2|chr12 (46657221-46657371) | |
| 243-359, gnl|danRer3|chr9 (31102173-31102317) | |
| 243-359, gnl|dasNov1|scaffold_6982 (44796-44646) | |
| 243-359, gnl|echTel1|scaffold_276803 (46113-46263) | |
| 243-359, gnl|fr1|chrUn (264607349-264607476) | |
| 243-359, gnl|hg17|chr6 (84004149-84004293) | |
| 243-359, gnl|Hg17|chr6 (84004270-84004154) | |
| 243-359, gnl|loxAfr1|scaffold_66439 (5801-5648) | |
| 243-359, gnl|mm7|chr9 (86715202-86715352) | |
| 243-359, gnl|Mm7|chr9 (86715323-86715207) | |
| 243-359, gnl|monDom2|scaffold_0 (146862288-146862122) | |
| 243-359, gnl|oryCun1|scaffold_206418 (44641-44490) | |
| 243-359, gnl|panTro1|chr5 (85640737-85640881) | |
| 243-359, gnl|rheMac2|chr4 (79266890-79267034) | |
| 243-359, gnl|rn3|chr8 (91886808-91886958) | |
| 243-359, gnl|tetNig1|chrUn_random (99879297-99879174) | |
| 605-783, gnl|bosTau2|chr29 (5518153-5517975) | |
| 605-783, gnl|canFam2|chr21 (16098719-16098490) | |
| 605-783, gnl|danRer3|chr9 (31099197-31099375) | |
| 605-783, gnl|dasNov1|scaffold_65204 (5255-5436) | |
| 605-783, gnl|echTel1|scaffold_310221 (3108-2884) | |
| 605-783, gnl|fr1|chrUn (203908918-203909124) | |
| 605-783, gnl|galGal2|chr1 (180679205-180678998) | |
| 605-783, gnl|hg17|chr11 (85834982-85835207) | |
| 605-783, gnl|Hg17|chr11 (85835180-85835002) | |
| 605-783, gnl|loxAfr1|scaffold_57570 (8301-8077) | |
| 605-783, gnl|mm7|chr7 (85798190-85797965) | |
| 605-783, gnl|Mm7|chr7 (85797990-85798168) | |
| 605-783, gnl|monDom2|scaffold_46 (1155531-1155312) | |
| 605-783, gnl|oryCun1|scaffold_130123 (10839-11064) | |
| 605-783, gnl|panTro1|chr9 (87488503-87488728) | |
| 605-783, gnl|rheMac2|chr14 (84771167-84771392) | |
| 605-783, gnl|rn3|chr1 (146497777-146497552) | |
| 605-783, gnl|tetNig1|chr2 (9258839-9258636) | |
| 605-783, gnl|xenTro1|scaffold_195 (1447274-1447063) | |
| 879-1391, gnl|bosTau2|chr9 (10118262-10117761) | |
| 879-1391, gnl|Hg17|chr6 (83978534-83978019) | |
| 879-1391, gnl|Mm7|chr9 (86686264-86685743) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| fat (1.47427) | |
| jca (0.22792) | |
| gul (0.177588) | |
| sin (0.174948) | |
| cag (0.151194) | |
| spl (0.143184) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ret (0.128733) | |
| sug (0.127291) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (1.47427) | |
| jca (0.22792) | |
| gul (0.177588) | |
| sin (0.174948) | |
| cag (0.151194) | |
| spl (0.143184) | |
| pla (0.133672) | |
| ute (0.132784) | |
| ret (0.128733) | |
| sug (0.127291) | |
| spc (0.113366) | |
| cty (0.10408) |