Ss1.1-Pig4-TMW8062A21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGGAGTCCCGGAAAGTTAGCATCCGGTTCCAGGTCCATTATATCACAGGTGCTGGTAT GCAATTCATTGCAGTAACTGGAGACCATGAGAGCCTTGGGAGATGGAAAGCATACATCCC ACTCCAGTGTAGCCAGGATGGGCTCTGGTCTCGATCGGTGCCCCTGCCGGCAGACACAGG GGTGGAATGGAAGTTTGTGGTGGTGGAGAATGGGGAAGTTACCCGTTGGGAAGAGTGCAG CAATAGATTCTTAGAGACCGGTCACGAAGATCAAGTGGTTCACAAGTGGTGGGGGATTCA CTGATTCAGTCTGCAAAGTCTGAAAGAGGCTGTTGCAGAATATGAAAGAGGCCGAGGGTG GGAAGCATCCTGAATAATTTAAAATAAGTGTACCTTCAAATCTAGCCATCAGAGTTGTTT CAGATTTGCTGTGGCTTTGGTCTAATGTGTAGATAATGCTTCCAGGGAGCATGGACTTCT TTTCCTGTGGCCCCGATGGATGGATTTATCCTGAGCCATCCGTTACTTTGGGGCCTGATG GTCTTCAGGGGGGCTTGGCTGCACTTCAGAGGTGCGCTGGTCAGGGAGCCCAGGAACTAA CCATCTGCACAGGGCTCAGGCTTGTGCCTTTGGGTGATCCTTAAACCAGGGGAATAAGAC AAGCCAGGTTCAAAAAGAGCTGATTTCCTATTGGTCCAGCAGGAGAAGTGCTCTCTTAAC TATATACACACTTTATATTTCAAAATGGTTAATACCATGTGGAACTATGATTAGAAAATC TTTGGTCACTAGATGTGGTTAGCAAGGATATGCGGGAACGCATCAAGCCTTCTGTTTTTT GTTTGGTTTTGCCTGCCATGTATAGTCGGAAGTTAGCAAGTATGTTTTTGTCTCAACGAC CAGAGGCTGGTGCAGACCTAAGGGGCCTAAGCAGAGTCTGCCCCCCGGAGCAGCCCAAGA GGGAGGGGATCAGGTGTGGGCTGAGCAGGGTGGCCTGAGTGATTCCTCTTAGAGGACTGG GAGGTGCAGGCCCGGCCCCACGGCCTCTCCCCACTGTCCTGCCTCTCAGACCGGATCTGG GCTGATGCGTGGACTGTCCCACAGCAACTGTTTTACCTTCTTCCTTCTCCCTTCCTGCCA GCAGCATCCCAGGTAACAAAATTGTAACAGAACAGTGATACAGAAGTACATCTATGCTTT GGGAAGAAATAAACATTTAAACTTTCCATTATAACTGAAAAAAATAATAAAAACTGAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGGAGTCCCGGAAAGTTAGCATCCGGTTCCAGGTCCATTATATCACAGGTGCTGGTAT GCAATTCATTGCAGTAACTGGAGACCATGAGAGCCTTGGGAGATGGAAAGCATACATCCC ACTCCAGTGTAGCCAGGATGGGCTCTGGTCTCGATCGGTGCCCCTGCCGGCAGACACAGG GGTGGAATGGAAGTTTGTGGTGGTGGAGAATGGGGAAGTTACCCGTTGGGAAGAGTGCAG CAATAGATTCTTAGAGACCGGTCACGAAGATCAAGTGGTTCACAAGTGGTGGGGGATTCA CTGATTCAGTCTGCAAAGTCTGAAAGAGGCTGTTGCAGAATATGAAAGAGGCCGAGGGTG GGAAGCATCCTGAATAATTTAAAATAAGTGTACCTTCAAATCTAGCCATCAGAGTTGTTT CAGATTTGCTGTGGCTTTGGTCTAATGTGTAGATAATGCTTCCAGGGAGCATGGACTTCT TTTCCTGTGGCCCCGATGGATGGATTTATCCTGAGCCATCCGTTACTTTGGGGCCTGATG GTCTTCAGGGGGGCTTGGCTGCACTTCAGAGGTGCGCTGGTCAGGGAGCCCAGGAACTAA CCATCTGCACAGGGCTCAGGCTTGTGCCTTTGGGTGATCCTTAAACCAGGGGAATAAGAC AAGCCAGGTTCAAAAAGAGCTGATTTCCTATTGGTCCAGCAGGAGAAGTGCTCTCTTAAC TATATACACACTTTATATTTCAAAATGGTTAATACCATGTGGAACTATGATTAGAAAATC TTTGGTCACTAGATGTGGTTAGCAAGGATATGCGGGAACGCATCAAGCCTTCTGTTTTTT GTTTGGTTTTGCCTGCCATGTATAGTCGGAAGTTAGCAAGTATGTTTTTGTCTCAACGAC CAGAGGCTGGTGCAGACCTAAGGGGCCTAAGCAGAGTCTGCCCCCCGGAGCAGCCCAAGA GGGAGGGGATCAGGTGTGGGCTGAGCAGGGTGGCCTGAGTGATTCCTCTTAGAGGACTGG GAGGTGCAGGCCCGGCCCCACGGCCTCTCCCCACTGTCCTGCCTCTCAGACCGGATCTGG GCTGATGCGTGGACTGTCCCACAGCAACTGTTTTACCTTCTTCCTTCTCCCTTCCTGCCA GCAGCATCCCAGGTAACAAAATTGTAACAGAACAGTGATACAGAAGTACATCTATGCTTT GGGAAGAAATAAACATTTAAACTTTCCATTATAACTGAAAAAAATAATAAAAACTGAGTT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 45-204, + strand, RNAz p=0.5746 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 45-204, + strand, RNAz p=0.5746 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 5-1037, gnl|bosTau2|chr6 (47499111-47500161) | |
| 5-1037, gnl|Hg17|chr4 (77587994-77589172) | |
| 5-1037, gnl|Mm7|chr5 (92592597-92593568) | |
| 1040-1253, gnl|bosTau2|chr6 (47500209-47500420) | |
| 1040-1253, gnl|canFam2|chr32 (3918129-3918272) | |
| 1040-1253, gnl|canFam2|chr32 (3918132-3918520) | |
| 1040-1253, gnl|dasNov1|scaffold_54026 (6853-7020) | |
| 1040-1253, gnl|dasNov1|scaffold_54026 (6863-7305) | |
| 1040-1253, gnl|hg17|chr12 (46166614-46166789) | |
| 1040-1253, gnl|hg17|chr4 (77589200-77589653) | |
| 1040-1253, gnl|Hg17|chr4 (77589223-77589436) | |
| 1040-1253, gnl|loxAfr1|scaffold_39825 (42458-42302) | |
| 1040-1253, gnl|loxAfr1|scaffold_39825 (42448-41993) | |
| 1040-1253, gnl|mm7|chr5 (92593583-92593745) | |
| 1040-1253, gnl|mm7|chr5 (92593593-92593985) | |
| 1040-1253, gnl|Mm7|chr5 (92593615-92593805) | |
| 1040-1253, gnl|monDom2|scaffold_32 (29743204-29743726) | |
| 1040-1253, gnl|oryCun1|scaffold_189913 (567-411) | |
| 1040-1253, gnl|oryCun1|scaffold_189913 (567-140) | |
| 1040-1253, gnl|panTro1|chr10 (47129063-47128888) | |
| 1040-1253, gnl|panTro1|chr3 (56134345-56133894) | |
| 1040-1253, gnl|rheMac2|chr11 (44528724-44528552) | |
| 1040-1253, gnl|rheMac2|chr5 (53284623-53284167) | |
| 1040-1253, gnl|rn3|chr14 (17031988-17031854) | |
| 1040-1253, gnl|rn3|chr14 (17031978-17031594) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-1037, gnl|bosTau2|chr6 (47499111-47500161) | |
| 5-1037, gnl|Hg17|chr4 (77587994-77589172) | |
| 5-1037, gnl|Mm7|chr5 (92592597-92593568) | |
| 1040-1253, gnl|bosTau2|chr6 (47500209-47500420) | |
| 1040-1253, gnl|canFam2|chr32 (3918129-3918272) | |
| 1040-1253, gnl|canFam2|chr32 (3918132-3918520) | |
| 1040-1253, gnl|dasNov1|scaffold_54026 (6853-7020) | |
| 1040-1253, gnl|dasNov1|scaffold_54026 (6863-7305) | |
| 1040-1253, gnl|hg17|chr12 (46166614-46166789) | |
| 1040-1253, gnl|hg17|chr4 (77589200-77589653) | |
| 1040-1253, gnl|Hg17|chr4 (77589223-77589436) | |
| 1040-1253, gnl|loxAfr1|scaffold_39825 (42458-42302) | |
| 1040-1253, gnl|loxAfr1|scaffold_39825 (42448-41993) | |
| 1040-1253, gnl|mm7|chr5 (92593583-92593745) | |
| 1040-1253, gnl|mm7|chr5 (92593593-92593985) | |
| 1040-1253, gnl|Mm7|chr5 (92593615-92593805) | |
| 1040-1253, gnl|monDom2|scaffold_32 (29743204-29743726) | |
| 1040-1253, gnl|oryCun1|scaffold_189913 (567-411) | |
| 1040-1253, gnl|oryCun1|scaffold_189913 (567-140) | |
| 1040-1253, gnl|panTro1|chr10 (47129063-47128888) | |
| 1040-1253, gnl|panTro1|chr3 (56134345-56133894) | |
| 1040-1253, gnl|rheMac2|chr11 (44528724-44528552) | |
| 1040-1253, gnl|rheMac2|chr5 (53284623-53284167) | |
| 1040-1253, gnl|rn3|chr14 (17031988-17031854) | |
| 1040-1253, gnl|rn3|chr14 (17031978-17031594) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| pla (0.267344) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| ssp (0.13552) | |
| sug (0.127291) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.267344) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| ssp (0.13552) | |
| sug (0.127291) |