Ss1.1-Pig4-TMW8062A23.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCCACGCGTCCGACCGTACTCAGGAAGGGGTTTTCCCTGTTCTGCAGCTGTGGAAGCCT GAGACTGCGGCCCAGGCGGGTCAGAGGCCCCGGGCCAGTCCTTCTGTCCCTGCTGTGGTG GAGCATCACAGCCAGGCGAGCCTGGCCTCCAGTGGCTCCTGGCTCCTGCCTCTTAGCCTG GCTCCCTCTTTCCCGGAAGGATGTTCCTGGTGGGCCTGACAGGGGGCATTGCCTCCGGCA AGAGCTCGGTTCTCCAAGTGCTCCAGCAGCTGGGTTGTGCGGTGATTGACGTGGACGTCA TTGCCCGGCATGTCGTCCAGCCAGGGTACCCCGCCCACCGGCGCATCGTGGAGGCCTTCG GCACTGAGGTCTTGCTGGAGAACGGAGACATCGATCGCAAGGCCCTGGGGGACCTGATCT TTAACCAGCCTGACCGGCGGCACCTGCTCAACGCCATCACCCACCCGGAGATCTGCAGGG AAATGACGAAGGAGACCTTCAAGTACTTCCTCCGGGGATACCGCTATGTGATTCTGGATG TCCCGCTGCTGTTTGAGACCAAGAAGCTGCTCAAGTACATGAAGCACACGGTGGTGGTGT ACTGTGACCGGGACACGCAGCTGGCCCGGCTGATGCAGCGGAACAACCTGAAGCAGGAAG ATGCAGAGGCCCGGATCAAGGCCCAGCTGCCCCTGGAGGACAAGGCCCGCATGGCCCGTC ACGTTCTCGACAACTCGGGCGAGTGGAGTGTCACCAAACGCCAGGTGGTCCTCCTGCACG CCGAGCTGGAGCGCTCCCTGGAGTACCTGCCGCTGAGGCTGGGGGTCCTCGCAGGGCTGG CCGGCATTGTCAGCCTCCTCTACCTGCTCACGCACTACCTCCTGGCTTCCCTCTAGCTGG ACCCTCAGGGCGGGAAGTTCCTCAGAGGCTGGGACCCGGAACGAATGCGGCCTGTGCTCT CCCATCCCCGCAGTACGTACACTCTGAATCCGGACCGAGCCCTGCCCAGGGCCGACCCTT GCTTGGAGGGAGAGAAACAGCCCTCTGTCAGCAGCTACACCTTCCCACCTTCCCCAGGCC CCTCCCTCCAGGAGCAGGCACAGAACCGTGTCCATGAGGGGCCGTGAAAGCAACACCAGG AGACCCGGGCGGCTTCTCTGGGTGGGGAGAGGAGCACCTGTGCGTAAAGCGGGCGGTTCC CTGGGCCTGCGCCTCTCCGAGCACGTGGCCCATCATGGCCAAGGCCCCCTTCGTGGACCA AGCACCGCCCCCTTCAGACAGGATCCTCCCAGAGGTCGAAGCCTGTGACCAGGAGGCGAA CAGTAAGGGTTCCCTCGTGGGCAGAGGCCAGGCCTCCTCCGGGATCACCCCGTCCCACCC GGGCATTTCCCCCGCGCCCCGCTCACCGCCTCCCACTGCGCTCCTCCCGCTCCTTGCACT CCTCGCCAGAGTCCATCCGCACCTGCACTTTCACCTTGCTGCTCCCCCATCTGGAAAACC TTTTATTTCCCTGCAACTGGCTGACTTCCAGCTCGGGCGCCCTCTGAAGCCCCAGGCTGG GTCAGGTGCTCTGGGAGACACCCCCCCCCAACGTTACGCCTGGATCCCCAGTATCGTAAT CAGCCCCAAGCTGGTTGTCTTCTCCTCCTAGACTGGAAGCCCTTTGAGGGCAGGGGCTGT GTCTTACTCATCTCTGTGTTCCTGGTGCAGAGCCCGACCCGCCATTGGTGCTGAATAAAG CGTGTTGATCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCCACGCGTCCGACCGTACTCAGGAAGGGGTTTTCCCTGTTCTGCAGCTGTGGAAGCCT GAGACTGCGGCCCAGGCGGGTCAGAGGCCCCGGGCCAGTCCTTCTGTCCCTGCTGTGGTG GAGCATCACAGCCAGGCGAGCCTGGCCTCCAGTGGCTCCTGGCTCCTGCCTCTTAGCCTG GCTCCCTCTTTCCCGGAAGGATGTTCCTGGTGGGCCTGACAGGGGGCATTGCCTCCGGCA AGAGCTCGGTTCTCCAAGTGCTCCAGCAGCTGGGTTGTGCGGTGATTGACGTGGACGTCA TTGCCCGGCATGTCGTCCAGCCAGGGTACCCCGCCCACCGGCGCATCGTGGAGGCCTTCG GCACTGAGGTCTTGCTGGAGAACGGAGACATCGATCGCAAGGCCCTGGGGGACCTGATCT TTAACCAGCCTGACCGGCGGCACCTGCTCAACGCCATCACCCACCCGGAGATCTGCAGGG AAATGACGAAGGAGACCTTCAAGTACTTCCTCCGGGGATACCGCTATGTGATTCTGGATG TCCCGCTGCTGTTTGAGACCAAGAAGCTGCTCAAGTACATGAAGCACACGGTGGTGGTGT ACTGTGACCGGGACACGCAGCTGGCCCGGCTGATGCAGCGGAACAACCTGAAGCAGGAAG ATGCAGAGGCCCGGATCAAGGCCCAGCTGCCCCTGGAGGACAAGGCCCGCATGGCCCGTC ACGTTCTCGACAACTCGGGCGAGTGGAGTGTCACCAAACGCCAGGTGGTCCTCCTGCACG CCGAGCTGGAGCGCTCCCTGGAGTACCTGCCGCTGAGGCTGGGGGTCCTCGCAGGGCTGG CCGGCATTGTCAGCCTCCTCTACCTGCTCACGCACTACCTCCTGGCTTCCCTCTAGCTGG ACCCTCAGGGCGGGAAGTTCCTCAGAGGCTGGGACCCGGAACGAATGCGGCCTGTGCTCT CCCATCCCCGCAGTACGTACACTCTGAATCCGGACCGAGCCCTGCCCAGGGCCGACCCTT GCTTGGAGGGAGAGAAACAGCCCTCTGTCAGCAGCTACACCTTCCCACCTTCCCCAGGCC CCTCCCTCCAGGAGCAGGCACAGAACCGTGTCCATGAGGGGCCGTGAAAGCAACACCAGG AGACCCGGGCGGCTTCTCTGGGTGGGGAGAGGAGCACCTGTGCGTAAAGCGGGCGGTTCC CTGGGCCTGCGCCTCTCCGAGCACGTGGCCCATCATGGCCAAGGCCCCCTTCGTGGACCA AGCACCGCCCCCTTCAGACAGGATCCTCCCAGAGGTCGAAGCCTGTGACCAGGAGGCGAA CAGTAAGGGTTCCCTCGTGGGCAGAGGCCAGGCCTCCTCCGGGATCACCCCGTCCCACCC GGGCATTTCCCCCGCGCCCCGCTCACCGCCTCCCACTGCGCTCCTCCCGCTCCTTGCACT CCTCGCCAGAGTCCATCCGCACCTGCACTTTCACCTTGCTGCTCCCCCATCTGGAAAACC TTTTATTTCCCTGCAACTGGCTGACTTCCAGCTCGGGCGCCCTCTGAAGCCCCAGGCTGG GTCAGGTGCTCTGGGAGACACCCCCCCCCAACGTTACGCCTGGATCCCCAGTATCGTAAT CAGCCCCAAGCTGGTTGTCTTCTCCTCCTAGACTGGAAGCCCTTTGAGGGCAGGGGCTGT GTCTTACTCATCTCTGTGTTCCTGGTGCAGAGCCCGACCCGCCATTGGTGCTGAATAAAG CGTGTTGATCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 843-942, - strand, RNAz p=0.563595 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 843-942, - strand, RNAz p=0.563595 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 92-310, gnl|bosTau2|chr19 (37287970-37288191) | |
| 92-310, gnl|Hg17|chr17 (40467898-40467670) | |
| 92-310, gnl|Mm7|chr11 (103109403-103109193) | |
| 312-517, gnl|bosTau2|chr19 (37288837-37289042) | |
| 312-517, gnl|canFam2|chr9 (21791259-21791110) | |
| 312-517, gnl|danRer3|chr25 (18951448-18951299) | |
| 312-517, gnl|dasNov1|scaffold_234720 (1172-1298) | |
| 312-517, gnl|echTel1|scaffold_163233 (1413-1264) | |
| 312-517, gnl|fr1|chrUn (62889850-62889998) | |
| 312-517, gnl|galGal2|chr27 (1581341-1581192) | |
| 312-517, gnl|hg17|chr17 (40467079-40467228) | |
| 312-517, gnl|Hg17|chr17 (40467285-40467080) | |
| 312-517, gnl|loxAfr1|scaffold_28702 (29765-29616) | |
| 312-517, gnl|mm7|chr11 (103108683-103108832) | |
| 312-517, gnl|Mm7|chr11 (103108889-103108684) | |
| 312-517, gnl|monDom2|scaffold_18 (41453222-41453073) | |
| 312-517, gnl|oryCun1|scaffold_173473 (48589-48440) | |
| 312-517, gnl|panTro1|chr19_random (20696248-20696099) | |
| 312-517, gnl|rheMac2|chr16 (55133578-55133727) | |
| 312-517, gnl|rn3|chr10 (92185279-92185428) | |
| 312-517, gnl|tetNig1|chr2_random (458262-458114) | |
| 604-1023, gnl|bosTau2|chr19 (37296589-37297025) | |
| 604-1023, gnl|Hg17|chr17 (40457619-40457133) | |
| 604-1023, gnl|Mm7|chr11 (103104214-103103800) | |
| 1026-1258, gnl|bosTau2|chr19 (37297050-37297306) | |
| 1026-1258, gnl|Hg17|chr17 (40457115-40456885) | |
| 1339-1755, gnl|bosTau2|chr19 (37297419-37297858) | |
| 1339-1755, gnl|Hg17|chr17 (40456728-40456251) | |
| 1339-1755, gnl|Mm7|chr11 (103103455-103103092) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 92-310, gnl|bosTau2|chr19 (37287970-37288191) | |
| 92-310, gnl|Hg17|chr17 (40467898-40467670) | |
| 92-310, gnl|Mm7|chr11 (103109403-103109193) | |
| 312-517, gnl|bosTau2|chr19 (37288837-37289042) | |
| 312-517, gnl|canFam2|chr9 (21791259-21791110) | |
| 312-517, gnl|danRer3|chr25 (18951448-18951299) | |
| 312-517, gnl|dasNov1|scaffold_234720 (1172-1298) | |
| 312-517, gnl|echTel1|scaffold_163233 (1413-1264) | |
| 312-517, gnl|fr1|chrUn (62889850-62889998) | |
| 312-517, gnl|galGal2|chr27 (1581341-1581192) | |
| 312-517, gnl|hg17|chr17 (40467079-40467228) | |
| 312-517, gnl|Hg17|chr17 (40467285-40467080) | |
| 312-517, gnl|loxAfr1|scaffold_28702 (29765-29616) | |
| 312-517, gnl|mm7|chr11 (103108683-103108832) | |
| 312-517, gnl|Mm7|chr11 (103108889-103108684) | |
| 312-517, gnl|monDom2|scaffold_18 (41453222-41453073) | |
| 312-517, gnl|oryCun1|scaffold_173473 (48589-48440) | |
| 312-517, gnl|panTro1|chr19_random (20696248-20696099) | |
| 312-517, gnl|rheMac2|chr16 (55133578-55133727) | |
| 312-517, gnl|rn3|chr10 (92185279-92185428) | |
| 312-517, gnl|tetNig1|chr2_random (458262-458114) | |
| 604-1023, gnl|bosTau2|chr19 (37296589-37297025) | |
| 604-1023, gnl|Hg17|chr17 (40457619-40457133) | |
| 604-1023, gnl|Mm7|chr11 (103104214-103103800) | |
| 1026-1258, gnl|bosTau2|chr19 (37297050-37297306) | |
| 1026-1258, gnl|Hg17|chr17 (40457115-40456885) | |
| 1339-1755, gnl|bosTau2|chr19 (37297419-37297858) | |
| 1339-1755, gnl|Hg17|chr17 (40456728-40456251) | |
| 1339-1755, gnl|Mm7|chr11 (103103455-103103092) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| pty (0.285429) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| col (0.195008) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nca (0.136874) | |
| che (0.136314) | |
| cov (0.132153) | |
| ecc (0.115035) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pty (0.285429) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| col (0.195008) | |
| ill (0.175593) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nca (0.136874) | |
| che (0.136314) | |
| cov (0.132153) | |
| ecc (0.115035) |