Ss1.1-Pig4-TMW8062B16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGGATGCCTGGGATCGAGTGAAAGCTGCCCAGCGCCTGGAAGGCCGGCCAGATGGACG TGGCACCCCCAGCTCCCTGTTGGCGTCCAGTGTGCCCCACCACCGCCGCTCGCTTGGCGT GTACCTGCAGGAGGGACCTGTGGGCTCCACGCTGAGCCTCAGCCTGGACAGTGACCAGAG CAGTGGCTCAACTGCATCCGGCTCCCGCCAGGCAGCCCGCCGTAGTACCAGCACCCTGTA CAGCCAGTTCCAGACAGCCGAGAGTGAGAACAGGTCCTATGAGGGCACCCTCTACAAGAA GGGGGCCTTCATGAAGCCCTGGAAGGCGCGCTGGTTTGTGCTGGACAAGACCAAGCACCA GCTGCGCTACTACGACCACCGCGTGGACACGGAGTGCAAGGGGGTCATTGACCTGGCGGA GGTGGAGGCCGTGGCGCCCGGCACGCCCACCATGGGCGCCCCCAAGACGGTGGACGAGAA GGCCTTCTTTGACGTGAAGACGACGCGTCGCGTTTACAACTTCTGTGCCCAGGACGTGCC GTCAGCCCAGCAGTGGGTGGACCAGATCCAGAGCTGCCTGTCGGACGCCTGAGCCCGGCC CTGCTCGCCGCGTCCGTCGTTCCGACCACTAGGGGTGGGCAGGGCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGGATGCCTGGGATCGAGTGAAAGCTGCCCAGCGCCTGGAAGGCCGGCCAGATGGACG TGGCACCCCCAGCTCCCTGTTGGCGTCCAGTGTGCCCCACCACCGCCGCTCGCTTGGCGT GTACCTGCAGGAGGGACCTGTGGGCTCCACGCTGAGCCTCAGCCTGGACAGTGACCAGAG CAGTGGCTCAACTGCATCCGGCTCCCGCCAGGCAGCCCGCCGTAGTACCAGCACCCTGTA CAGCCAGTTCCAGACAGCCGAGAGTGAGAACAGGTCCTATGAGGGCACCCTCTACAAGAA GGGGGCCTTCATGAAGCCCTGGAAGGCGCGCTGGTTTGTGCTGGACAAGACCAAGCACCA GCTGCGCTACTACGACCACCGCGTGGACACGGAGTGCAAGGGGGTCATTGACCTGGCGGA GGTGGAGGCCGTGGCGCCCGGCACGCCCACCATGGGCGCCCCCAAGACGGTGGACGAGAA GGCCTTCTTTGACGTGAAGACGACGCGTCGCGTTTACAACTTCTGTGCCCAGGACGTGCC GTCAGCCCAGCAGTGGGTGGACCAGATCCAGAGCTGCCTGTCGGACGCCTGAGCCCGGCC CTGCTCGCCGCGTCCGTCGTTCCGACCACTAGGGGTGGGCAGGGCCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 153-262, - strand, RNAz p=0.526987 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 153-262, - strand, RNAz p=0.526987 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 62-262, gnl|bosTau2|chr5 (75835767-75835967) | |
| 62-262, gnl|canFam2|chr10 (19832265-19832424) | |
| 62-262, gnl|danRer3|chr4 (9887266-9887048) | |
| 62-262, gnl|echTel1|scaffold_156975 (1828-1669) | |
| 62-262, gnl|fr1|chrUn (276029830-276029634) | |
| 62-262, gnl|galGal2|chrUn (108143941-108143781) | |
| 62-262, gnl|hg17|chr1 (11874226-11874384) | |
| 62-262, gnl|Hg17|chr22 (49177017-49176817) | |
| 62-262, gnl|loxAfr1|scaffold_52529 (8940-9099) | |
| 62-262, gnl|mm7|chr15 (89372694-89372535) | |
| 62-262, gnl|Mm7|chr15 (89372694-89372494) | |
| 62-262, gnl|monDom2|scaffold_119 (917314-917165) | |
| 62-262, gnl|oryCun1|scaffold_207716 (5052-5211) | |
| 62-262, gnl|panTro1|chr1 (12091408-12091566) | |
| 62-262, gnl|rheMac2|chr8 (58058640-58058481) | |
| 62-262, gnl|rn3|chr7 (127619538-127619379) | |
| 62-262, gnl|tetNig1|chrUn_random (121499120-121498886) | |
| 62-262, gnl|xenTro1|scaffold_534 (736158-736006) | |
| 494-648, gnl|bosTau2|chr5 (75837009-75837168) | |
| 494-648, gnl|Hg17|chr22 (49175813-49175647) | |
| 494-648, gnl|Mm7|chr15 (89371603-89371435) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-262, gnl|bosTau2|chr5 (75835767-75835967) | |
| 62-262, gnl|canFam2|chr10 (19832265-19832424) | |
| 62-262, gnl|danRer3|chr4 (9887266-9887048) | |
| 62-262, gnl|echTel1|scaffold_156975 (1828-1669) | |
| 62-262, gnl|fr1|chrUn (276029830-276029634) | |
| 62-262, gnl|galGal2|chrUn (108143941-108143781) | |
| 62-262, gnl|hg17|chr1 (11874226-11874384) | |
| 62-262, gnl|Hg17|chr22 (49177017-49176817) | |
| 62-262, gnl|loxAfr1|scaffold_52529 (8940-9099) | |
| 62-262, gnl|mm7|chr15 (89372694-89372535) | |
| 62-262, gnl|Mm7|chr15 (89372694-89372494) | |
| 62-262, gnl|monDom2|scaffold_119 (917314-917165) | |
| 62-262, gnl|oryCun1|scaffold_207716 (5052-5211) | |
| 62-262, gnl|panTro1|chr1 (12091408-12091566) | |
| 62-262, gnl|rheMac2|chr8 (58058640-58058481) | |
| 62-262, gnl|rn3|chr7 (127619538-127619379) | |
| 62-262, gnl|tetNig1|chrUn_random (121499120-121498886) | |
| 62-262, gnl|xenTro1|scaffold_534 (736158-736006) | |
| 494-648, gnl|bosTau2|chr5 (75837009-75837168) | |
| 494-648, gnl|Hg17|chr22 (49175813-49175647) | |
| 494-648, gnl|Mm7|chr15 (89371603-89371435) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ebs (0.236602) | |
| hyp (0.142837) | |
| ese (0.126502) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| hyp (0.142837) | |
| ese (0.126502) | |
| med (0.116252) |