Ss1.1-Pig4-TMW8062B24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCCTCGGTCCCCGCGTCGCTCGCTCGCTCGCCGGGCGGACGCTCCGCCTCCGCCAGTC GGCTCGGCGCTCTGCTGCGCGGCGTGGAGCAGAGCCGGGGCCCGGGGCTGGGGGCTGGGA GGTCGCCGCCCGCCACGGGCAAGCTTGAGCCGCAATGGCTGAGATGGGTAGCAAGGGGGT GACCGCGGGGAAGATCGCCAGCAATGTGCAGAAGAAGCTCACTCGCGCGCAGGAGAAGGT CCTCCAGAAACTGGGGAAGGCAGATGAGACCAAGGATGAACAGTTTGAACAGTGTGTCCA GAATTTCAACAAGCAGCTGAGTGAGGGCACCCGGCTGCAGAAGGATCTCCGAACCTACCT GGCCTCAGTCAAAGCCATGCATGAGGCCTCCAAGAAGCTGAATGAGTGTCTGCAGGAGGT GTACGAGCCTGACTGGCCGGGCAGGGACGAAGCCAACAAGATCGCAGAGAACAATGACCT GCTCTGGATGGATTACCACCAGAAGCTGGTGGACCAGGCGCTGCTGACCATGGACACGTA CCTGGGCCAGTTCCCGGACATCAAGTCACGCATTGCCAAGCGTGGGCGGAAGCTGGTGGA CTATGACAGTGCCCGGCACCATTATGAGTCCCTCCAGACTGCCAAAAAGAAGGATGAAGC CAAAATAGCTAAGGCCGAGGAAGAGCTCATCAAAGCCCAGAAGGTGTTTGAGGAGATGAA CGTGGACCTGCAGGAGGAGCTGCCGTCCCTGTGGAACAGCCGGGTGGGTTTCTATGTCAA CACTTTCCAGAGCATCGCGGGCTTGGAGGAGAACTTCCACAAGGAAATGAGTAAGCTCAA CCAGAATCTCAATGACGTGCTGGTCAGCCTGGAGAAGCAGCACGGGAGCAACACCTTCAC GGTCAAGGCCCAGCCCAGTGACAACGCCCCTGCAAAAGGGAACAAGAGCCCCTCGCCTCC GCCTGATGGCTCTCCTGCTGCCACTCCCGAGATCAGAGTCAACCACGAGCCTGAGCCAGC CGGGGCAGCCACACCTGGGGCAGCCCTCCCCAAGTCCCCGTCCCAGCCCACAGAGAGTCC AGCTGGCAGCCTGCCTTCCGGGGAGCCCAGCGCTGCCGAGGGCACCTTTGCTGTGGCCTG GCCCAGCCAGACGGCCGAGCCAGGGCCTGCCCAACCAGCAGAGGCGTCGGAGGTGGCGGG TGGAGCCCAGGAGCCTGGGGAGCCGGCAGCAAGTGAAGCAGCCTCCAGTTCTCTCCCGGC GGTGGTGGTGGAGACCTTCTCAGCAACTGTGAACGGCACCGTGGAGAGCGGCAGCGCGGC AGGGCGCCTGGACCTGCCTCCAGGGTTCATGTTCAAGGTGCAGGCCCAGCACGACTACAC GGCCACTGACACAGACGAGCTGCAACTCAAGGCTGGAGACGTGGTGCTGGTGATCCCCTT CCAGAACCCGGAGGAGCAGGACGAAGGCTGGCTCATGGGCGTGAAGGAGAGTGACTGGAA CCAGCACAAGGAGCTGGAGAAGTGCCGGGGTGTCTTCCCTGAGAACTTCACAGAGCGTGT GCAGTGAGGGTGTGGCTGGCGCAGCACCTGGGAGCGTGAAGAACACCACCTTTTCCCGAA AAATGTGTGTTTCTTTTTCTTTCTTTTTTTTTTTTTCCTCCTGTTTTCGTTTGTAAACTT TTGAAAAGCAAAGGGAAATTGAAGGGAGAGAGCCAAGCCAAGACGTGTTCTCCCAGAGAC AAGGTTGTTTCCAGAGAACCTGGTTTCAGCAAGTCCTGTGGAGTCACCGTGTTCCTGAAG CTGCTGTGTCCCCTAGTTGAGCTCCTGCCGCACCCGCCCACGCACCGCCCTCGCCGGGTG TCGCAGCCTGTGTGCCGCTGTGGGGCGGGCCTGGGGCCTGAGCCCCCATGCTTGCCTGGG CAAGGGCCCTCTTTTCCTGGCAGCTGCCGTGGGTGGGGTCTGGTGTTTCCAGAGACCTTG GGCCCAGACCATCCGGGCCTGGCCCTGCCCTGCAGACCGTCTGTGTGCTGTTTGAAAATA AATCTTAGTGTTCAAAACAAAACGAAACAAACAAAAAAAAAACCTGACAAAAGCCTCAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCCTCGGTCCCCGCGTCGCTCGCTCGCTCGCCGGGCGGACGCTCCGCCTCCGCCAGTC GGCTCGGCGCTCTGCTGCGCGGCGTGGAGCAGAGCCGGGGCCCGGGGCTGGGGGCTGGGA GGTCGCCGCCCGCCACGGGCAAGCTTGAGCCGCAATGGCTGAGATGGGTAGCAAGGGGGT GACCGCGGGGAAGATCGCCAGCAATGTGCAGAAGAAGCTCACTCGCGCGCAGGAGAAGGT CCTCCAGAAACTGGGGAAGGCAGATGAGACCAAGGATGAACAGTTTGAACAGTGTGTCCA GAATTTCAACAAGCAGCTGAGTGAGGGCACCCGGCTGCAGAAGGATCTCCGAACCTACCT GGCCTCAGTCAAAGCCATGCATGAGGCCTCCAAGAAGCTGAATGAGTGTCTGCAGGAGGT GTACGAGCCTGACTGGCCGGGCAGGGACGAAGCCAACAAGATCGCAGAGAACAATGACCT GCTCTGGATGGATTACCACCAGAAGCTGGTGGACCAGGCGCTGCTGACCATGGACACGTA CCTGGGCCAGTTCCCGGACATCAAGTCACGCATTGCCAAGCGTGGGCGGAAGCTGGTGGA CTATGACAGTGCCCGGCACCATTATGAGTCCCTCCAGACTGCCAAAAAGAAGGATGAAGC CAAAATAGCTAAGGCCGAGGAAGAGCTCATCAAAGCCCAGAAGGTGTTTGAGGAGATGAA CGTGGACCTGCAGGAGGAGCTGCCGTCCCTGTGGAACAGCCGGGTGGGTTTCTATGTCAA CACTTTCCAGAGCATCGCGGGCTTGGAGGAGAACTTCCACAAGGAAATGAGTAAGCTCAA CCAGAATCTCAATGACGTGCTGGTCAGCCTGGAGAAGCAGCACGGGAGCAACACCTTCAC GGTCAAGGCCCAGCCCAGTGACAACGCCCCTGCAAAAGGGAACAAGAGCCCCTCGCCTCC GCCTGATGGCTCTCCTGCTGCCACTCCCGAGATCAGAGTCAACCACGAGCCTGAGCCAGC CGGGGCAGCCACACCTGGGGCAGCCCTCCCCAAGTCCCCGTCCCAGCCCACAGAGAGTCC AGCTGGCAGCCTGCCTTCCGGGGAGCCCAGCGCTGCCGAGGGCACCTTTGCTGTGGCCTG GCCCAGCCAGACGGCCGAGCCAGGGCCTGCCCAACCAGCAGAGGCGTCGGAGGTGGCGGG TGGAGCCCAGGAGCCTGGGGAGCCGGCAGCAAGTGAAGCAGCCTCCAGTTCTCTCCCGGC GGTGGTGGTGGAGACCTTCTCAGCAACTGTGAACGGCACCGTGGAGAGCGGCAGCGCGGC AGGGCGCCTGGACCTGCCTCCAGGGTTCATGTTCAAGGTGCAGGCCCAGCACGACTACAC GGCCACTGACACAGACGAGCTGCAACTCAAGGCTGGAGACGTGGTGCTGGTGATCCCCTT CCAGAACCCGGAGGAGCAGGACGAAGGCTGGCTCATGGGCGTGAAGGAGAGTGACTGGAA CCAGCACAAGGAGCTGGAGAAGTGCCGGGGTGTCTTCCCTGAGAACTTCACAGAGCGTGT GCAGTGAGGGTGTGGCTGGCGCAGCACCTGGGAGCGTGAAGAACACCACCTTTTCCCGAA AAATGTGTGTTTCTTTTTCTTTCTTTTTTTTTTTTTCCTCCTGTTTTCGTTTGTAAACTT TTGAAAAGCAAAGGGAAATTGAAGGGAGAGAGCCAAGCCAAGACGTGTTCTCCCAGAGAC AAGGTTGTTTCCAGAGAACCTGGTTTCAGCAAGTCCTGTGGAGTCACCGTGTTCCTGAAG CTGCTGTGTCCCCTAGTTGAGCTCCTGCCGCACCCGCCCACGCACCGCCCTCGCCGGGTG TCGCAGCCTGTGTGCCGCTGTGGGGCGGGCCTGGGGCCTGAGCCCCCATGCTTGCCTGGG CAAGGGCCCTCTTTTCCTGGCAGCTGCCGTGGGTGGGGTCTGGTGTTTCCAGAGACCTTG GGCCCAGACCATCCGGGCCTGGCCCTGCCCTGCAGACCGTCTGTGTGCTGTTTGAAAATA AATCTTAGTGTTCAAAACAAAACGAAACAAACAAAAAAAAAACCTGACAAAAGCCTCAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1902-2014, - strand, RNAz p=0.760882 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1902-2014, - strand, RNAz p=0.760882 |
| Aligned organism(s): 70 entry(ies) | More info |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
| 1-240, gnl|bosTau2|chr2 (1057828-1057587) | |
| 1-240, gnl|Hg17|chr2 (127580940-127580664) | |
| 1-240, gnl|Mm7|chr18 (32769288-32769570) | |
| 564-674, gnl|bosTau2|chr2 (1020041-1019931) | |
| 564-674, gnl|canFam2|chr19 (26531043-26530936) | |
| 564-674, gnl|canFam2|chr27 (6586815-6586691) | |
| 564-674, gnl|canFam2|chr27 (6586707-6586806) | |
| 564-674, gnl|danRer3|chr9 (8983064-8982950) | |
| 564-674, gnl|danRer3|chrNA (758018-758139) | |
| 564-674, gnl|dasNov1|scaffold_25903 (39107-38985) | |
| 564-674, gnl|dasNov1|scaffold_25903 (39108-39001) | |
| 564-674, gnl|dasNov1|scaffold_25903 (38996-39097) | |
| 564-674, gnl|echTel1|scaffold_192450 (14767-14873) | |
| 564-674, gnl|echTel1|scaffold_234805 (442-339) | |
| 564-674, gnl|echTel1|scaffold_318126 (55407-55527) | |
| 564-674, gnl|fr1|chrUn (102125796-102125683) | |
| 564-674, gnl|fr1|chrUn (159938287-159938180) | |
| 564-674, gnl|hg17|chr12 (49979652-49979776) | |
| 564-674, gnl|hg17|chr2 (127542725-127542832) | |
| 564-674, gnl|Hg17|chr2 (127542839-127542729) | |
| 564-674, gnl|hg17|chr4 (83553638-83553738) | |
| 564-674, gnl|loxAfr1|scaffold_17415 (26712-26816) | |
| 564-674, gnl|loxAfr1|scaffold_18995 (13202-13076) | |
| 564-674, gnl|loxAfr1|scaffold_18995 (13202-13095) | |
| 564-674, gnl|mm7|chr15 (100637626-100637747) | |
| 564-674, gnl|mm7|chr15 (100637737-100637633) | |
| 564-674, gnl|mm7|chr18 (32806373-32806268) | |
| 564-674, gnl|Mm7|chr18 (32806259-32806369) | |
| 564-674, gnl|monDom2|scaffold_24 (44077102-44076995) | |
| 564-674, gnl|oryCun1|scaffold_212776 (12396-12518) | |
| 564-674, gnl|oryCun1|scaffold_212776 (12369-12502) | |
| 564-674, gnl|oryCun1|scaffold_212776 (12507-12403) | |
| 564-674, gnl|panTro1|chr10 (51203465-51203589) | |
| 564-674, gnl|panTro1|chr13 (13657598-13657705) | |
| 564-674, gnl|panTro1|chr3 (50155711-50155611) | |
| 564-674, gnl|rheMac2|chr11 (48451768-48451892) | |
| 564-674, gnl|rheMac2|chr13 (133513553-133513660) | |
| 564-674, gnl|rheMac2|chr6 (72084837-72084941) | |
| 564-674, gnl|rn3|chr18 (24876256-24876151) | |
| 564-674, gnl|rn3|chr7 (139495259-139495380) | |
| 564-674, gnl|rn3|chr7 (139495370-139495266) | |
| 564-674, gnl|tetNig1|chr11 (10344281-10344165) | |
| 564-674, gnl|tetNig1|chr11 (10344169-10344273) | |
| 564-674, gnl|tetNig1|chr2 (12974071-12974180) | |
| 564-674, gnl|xenTro1|scaffold_633 (204336-204443) | |
| 916-1066, gnl|bosTau2|chr2 (1010801-1010651) | |
| 916-1066, gnl|canFam2|chr19 (26540355-26539940) | |
| 916-1066, gnl|echTel1|scaffold_192450 (4430-4889) | |
| 916-1066, gnl|hg17|chr2 (127532595-127533057) | |
| 916-1066, gnl|Hg17|chr2 (127532964-127532817) | |
| 916-1066, gnl|mm7|chr18 (32817271-32816813) | |
| 916-1066, gnl|Mm7|chr18 (32816895-32817045) | |
| 916-1066, gnl|monDom2|scaffold_24 (44097719-44097146) | |
| 916-1066, gnl|panTro1|chr13 (13647322-13647796) | |
| 916-1066, gnl|rheMac2|chr13 (133503283-133503745) | |
| 916-1066, gnl|rn3|chr18 (24888713-24888258) | |
| 1247-1360, gnl|bosTau2|chr2 (1003480-1003367) | |
| 1247-1360, gnl|canFam2|chr19 (26547829-26547453) | |
| 1247-1360, gnl|echTel1|scaffold_230721 (1124-804) | |
| 1247-1360, gnl|hg17|chr2 (127524604-127524977) | |
| 1247-1360, gnl|Hg17|chr2 (127524718-127524605) | |
| 1247-1360, gnl|mm7|chr18 (32824177-32823805) | |
| 1247-1360, gnl|Mm7|chr18 (32824061-32824174) | |
| 1247-1360, gnl|monDom2|scaffold_24 (44109445-44108983) | |
| 1247-1360, gnl|oryCun1|scaffold_100266 (10261-10648) | |
| 1247-1360, gnl|panTro1|chr13 (13638943-13639316) | |
| 1247-1360, gnl|rn3|chr18 (24895624-24895247) | |
| 1458-2076, gnl|bosTau2|chr2 (1001366-1000733) | |
| 1458-2076, gnl|Hg17|chr2 (127522441-127521855) | |
| 1458-2076, gnl|Mm7|chr18 (32827211-32827790) |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-240, gnl|bosTau2|chr2 (1057828-1057587) | |
| 1-240, gnl|Hg17|chr2 (127580940-127580664) | |
| 1-240, gnl|Mm7|chr18 (32769288-32769570) | |
| 564-674, gnl|bosTau2|chr2 (1020041-1019931) | |
| 564-674, gnl|canFam2|chr19 (26531043-26530936) | |
| 564-674, gnl|canFam2|chr27 (6586815-6586691) | |
| 564-674, gnl|canFam2|chr27 (6586707-6586806) | |
| 564-674, gnl|danRer3|chr9 (8983064-8982950) | |
| 564-674, gnl|danRer3|chrNA (758018-758139) | |
| 564-674, gnl|dasNov1|scaffold_25903 (39107-38985) | |
| 564-674, gnl|dasNov1|scaffold_25903 (39108-39001) | |
| 564-674, gnl|dasNov1|scaffold_25903 (38996-39097) | |
| 564-674, gnl|echTel1|scaffold_192450 (14767-14873) | |
| 564-674, gnl|echTel1|scaffold_234805 (442-339) | |
| 564-674, gnl|echTel1|scaffold_318126 (55407-55527) | |
| 564-674, gnl|fr1|chrUn (102125796-102125683) | |
| 564-674, gnl|fr1|chrUn (159938287-159938180) | |
| 564-674, gnl|hg17|chr12 (49979652-49979776) | |
| 564-674, gnl|hg17|chr2 (127542725-127542832) | |
| 564-674, gnl|Hg17|chr2 (127542839-127542729) | |
| 564-674, gnl|hg17|chr4 (83553638-83553738) | |
| 564-674, gnl|loxAfr1|scaffold_17415 (26712-26816) | |
| 564-674, gnl|loxAfr1|scaffold_18995 (13202-13076) | |
| 564-674, gnl|loxAfr1|scaffold_18995 (13202-13095) | |
| 564-674, gnl|mm7|chr15 (100637626-100637747) | |
| 564-674, gnl|mm7|chr15 (100637737-100637633) | |
| 564-674, gnl|mm7|chr18 (32806373-32806268) | |
| 564-674, gnl|Mm7|chr18 (32806259-32806369) | |
| 564-674, gnl|monDom2|scaffold_24 (44077102-44076995) | |
| 564-674, gnl|oryCun1|scaffold_212776 (12396-12518) | |
| 564-674, gnl|oryCun1|scaffold_212776 (12369-12502) | |
| 564-674, gnl|oryCun1|scaffold_212776 (12507-12403) | |
| 564-674, gnl|panTro1|chr10 (51203465-51203589) | |
| 564-674, gnl|panTro1|chr13 (13657598-13657705) | |
| 564-674, gnl|panTro1|chr3 (50155711-50155611) | |
| 564-674, gnl|rheMac2|chr11 (48451768-48451892) | |
| 564-674, gnl|rheMac2|chr13 (133513553-133513660) | |
| 564-674, gnl|rheMac2|chr6 (72084837-72084941) | |
| 564-674, gnl|rn3|chr18 (24876256-24876151) | |
| 564-674, gnl|rn3|chr7 (139495259-139495380) | |
| 564-674, gnl|rn3|chr7 (139495370-139495266) | |
| 564-674, gnl|tetNig1|chr11 (10344281-10344165) | |
| 564-674, gnl|tetNig1|chr11 (10344169-10344273) | |
| 564-674, gnl|tetNig1|chr2 (12974071-12974180) | |
| 564-674, gnl|xenTro1|scaffold_633 (204336-204443) | |
| 916-1066, gnl|bosTau2|chr2 (1010801-1010651) | |
| 916-1066, gnl|canFam2|chr19 (26540355-26539940) | |
| 916-1066, gnl|echTel1|scaffold_192450 (4430-4889) | |
| 916-1066, gnl|hg17|chr2 (127532595-127533057) | |
| 916-1066, gnl|Hg17|chr2 (127532964-127532817) | |
| 916-1066, gnl|mm7|chr18 (32817271-32816813) | |
| 916-1066, gnl|Mm7|chr18 (32816895-32817045) | |
| 916-1066, gnl|monDom2|scaffold_24 (44097719-44097146) | |
| 916-1066, gnl|panTro1|chr13 (13647322-13647796) | |
| 916-1066, gnl|rheMac2|chr13 (133503283-133503745) | |
| 916-1066, gnl|rn3|chr18 (24888713-24888258) | |
| 1247-1360, gnl|bosTau2|chr2 (1003480-1003367) | |
| 1247-1360, gnl|canFam2|chr19 (26547829-26547453) | |
| 1247-1360, gnl|echTel1|scaffold_230721 (1124-804) | |
| 1247-1360, gnl|hg17|chr2 (127524604-127524977) | |
| 1247-1360, gnl|Hg17|chr2 (127524718-127524605) | |
| 1247-1360, gnl|mm7|chr18 (32824177-32823805) | |
| 1247-1360, gnl|Mm7|chr18 (32824061-32824174) | |
| 1247-1360, gnl|monDom2|scaffold_24 (44109445-44108983) | |
| 1247-1360, gnl|oryCun1|scaffold_100266 (10261-10648) | |
| 1247-1360, gnl|panTro1|chr13 (13638943-13639316) | |
| 1247-1360, gnl|rn3|chr18 (24895624-24895247) | |
| 1458-2076, gnl|bosTau2|chr2 (1001366-1000733) | |
| 1458-2076, gnl|Hg17|chr2 (127522441-127521855) | |
| 1458-2076, gnl|Mm7|chr18 (32827211-32827790) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| nms (0.641574) | |
| nep (0.551775) | |
| fhi (0.508733) | |
| mas (0.42061) | |
| fcc (0.39557) | |
| nca (0.273748) | |
| ste (0.270416) | |
| pla (0.267344) | |
| ese (0.253004) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.641574) | |
| nep (0.551775) | |
| fhi (0.508733) | |
| mas (0.42061) | |
| fcc (0.39557) | |
| nca (0.273748) | |
| ste (0.270416) | |
| pla (0.267344) | |
| ese (0.253004) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) |