Non-Coding RNA Search

Ss1.1-Pig4-TMW8062C07.5

Sequence:


               
               GCGGCAGGAAGGGAGGAGGCGAGCGGGAGGAGGGAGCCCAATCGCGCGGCGCCCCCGCCC
CGGCCCCGCGCGGCGCCGCCTCCGCCATTGCTGCGAGCAGAAGCCGGCGACGCGGAGGCT
CGGAGCGCGGTCGGAGCCCAGACCTGCCGGAGCCGGGCGTGGGGCGGCAGCCTCGGGTCT
CCCGGAACCATGGTGAAGTTGGGGAACAATTTCGCGGAGAAGGGCACCAAGCAGCCCCTG
CTGGAGGATGGCTTCGACACCATCCCCCTGATGACGCCCCTCGATGTCAATCAGCTGCAG
TTCCCGCCCCCGGATAAGGTGGTCGTGAAAACGAAGACCGAATATGAACCTGACCGCAAG
AAAGGCAAAGCACGTCCTCCCAAGATAGCCGAGTTCACCGTCAGCATCACCGAGGGGGTC
ACCGAGAGGTTCAAGGTGTCCGTGCTGGTCCTCTTCGCCCTGGCCTTCCTCACCTGTGTC
GTCTTCCTGGTCGTCTACAAGGTATACAAGTATGACCGCGCCTGCCCCGATGGCTTTGTC
CTCAAGAACACCCAGTGCATTCCAGAAGGCTTGGAGAGCTACTACGTGGAGCAAGACTCC
AACGCCCGGGAGAAGTTTTACACCGTCATCAACCACTACAACCTGGCCAAGCAGAGCATC
ACCCGCTCGGTGTCGCCGTGGATGTCCGTCCTGTCGGAAGAGAAGCTCTCAGAGCAGGAG
ACCGAGGCTGCCGAGAAATCCGCTTAGCGAGATGGGCAGGTTCCTTACAGCGTCACTTGA
AGGTAACAAAGGGACTCTGAGGGACATTTCATTCAATGTAATTACCGATAATTTAGAGGT
TACTCATTTATGGTGCAACCGCTTCTGTTTGCTAATGCTGCTTTGCAAATAAAACTTGCT
GCAGAAGACCCATGGGCATAAAGTCAGGTGCATATCAGCATTGCTTAAAGAGCTCTGACA
CCACGTTTCATGTTAAGGAATCTTAATTTAGTGACTTTACGGGGATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCAGGAAGGGAGGAGGCGAGCGGGAGGAGGGAGCCCAATCGCGCGGCGCCCCCGCCC
CGGCCCCGCGCGGCGCCGCCTCCGCCATTGCTGCGAGCAGAAGCCGGCGACGCGGAGGCT
CGGAGCGCGGTCGGAGCCCAGACCTGCCGGAGCCGGGCGTGGGGCGGCAGCCTCGGGTCT
CCCGGAACCATGGTGAAGTTGGGGAACAATTTCGCGGAGAAGGGCACCAAGCAGCCCCTG
CTGGAGGATGGCTTCGACACCATCCCCCTGATGACGCCCCTCGATGTCAATCAGCTGCAG
TTCCCGCCCCCGGATAAGGTGGTCGTGAAAACGAAGACCGAATATGAACCTGACCGCAAG
AAAGGCAAAGCACGTCCTCCCAAGATAGCCGAGTTCACCGTCAGCATCACCGAGGGGGTC
ACCGAGAGGTTCAAGGTGTCCGTGCTGGTCCTCTTCGCCCTGGCCTTCCTCACCTGTGTC
GTCTTCCTGGTCGTCTACAAGGTATACAAGTATGACCGCGCCTGCCCCGATGGCTTTGTC
CTCAAGAACACCCAGTGCATTCCAGAAGGCTTGGAGAGCTACTACGTGGAGCAAGACTCC
AACGCCCGGGAGAAGTTTTACACCGTCATCAACCACTACAACCTGGCCAAGCAGAGCATC
ACCCGCTCGGTGTCGCCGTGGATGTCCGTCCTGTCGGAAGAGAAGCTCTCAGAGCAGGAG
ACCGAGGCTGCCGAGAAATCCGCTTAGCGAGATGGGCAGGTTCCTTACAGCGTCACTTGA
AGGTAACAAAGGGACTCTGAGGGACATTTCATTCAATGTAATTACCGATAATTTAGAGGT
TACTCATTTATGGTGCAACCGCTTCTGTTTGCTAATGCTGCTTTGCAAATAAAACTTGCT
GCAGAAGACCCATGGGCATAAAGTCAGGTGCATATCAGCATTGCTTAAAGAGCTCTGACA
CCACGTTTCATGTTAAGGAATCTTAATTTAGTGACTTTACGGGGATTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6P9Y0_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6P9Y0_RAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               536-1008, gnl|bosTau2|chr6 (61019958-61019482)
               

               
               536-1008, gnl|Hg17|chr4 (4537023-4537495)
               

               
               536-1008, gnl|Mm7|chr5 (37220279-37219806)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               536-1008, gnl|bosTau2|chr6 (61019958-61019482)
               

               
               536-1008, gnl|Hg17|chr4 (4537023-4537495)
               

               
               536-1008, gnl|Mm7|chr5 (37220279-37219806)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ece (0.45861)
               

               
               nmm (0.398406)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               fbs (0.175346)
               

               
               sug (0.127291)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               nmm (0.398406)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               fbs (0.175346)
               

               
               sug (0.127291)

	536-1008, gnl\|bosTau2\|chr6 (61019958-61019482)
	536-1008, gnl\|Hg17\|chr4 (4537023-4537495)
	536-1008, gnl\|Mm7\|chr5 (37220279-37219806)

	ece (0.45861)
	nmm (0.398406)
	hyp (0.285673)
	fce (0.271592)
	ebs (0.236602)
	ecc (0.23007)
	fbs (0.175346)
	sug (0.127291)