Ss1.1-Pig4-TMW8062C08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCCTCGGCATAGCCCATGAACCGCGTGCCCTCAGACAGCAGCCTGGGTACCCCCTCGG TACTGAGTGAGATCAGTAAGTCGGTCAAACCGCGGCTAGCATCCTTCCGCAGCCTTCGAG GCAGCCGTGGGACGGTGGTGACCGAGGATTTCAGCCACTTGCCCCCAGAGCAGCAGAGAA AGCGGCTTCAGCAGCAGCTGGAAGAACGAAACCGTGAACTTCAGAAGGAGATTGACCAGA GGGAAGCCCTAAAGAAAATGAAGGACGTATATGAGAAGACACCTCAGATGGGGGACCCAG CCAGCTTGGAACCCCGCATCACAGAAACCCTAAACAACATTGAACGGCTGAAATTGGAAG TACAGAAGTATGAGGCTTGGCTGGCAGAAGCCGAGAGCCGGGTCCTAAGCAACCGAGGGG ACACCCTGGGCCGGCACACTCGGCCCCCAGACCCCCCAGCCAGCGCCCCGCCAGACAGCA GCAGCAGCAACAACGGATCACAGGATAACAAGGAGAGCTCTGAAGAGCCCCCTGCAGAGG AGGGTCAGGATGCTCCCATCTACACGGAGTTTGATGAGGATTTTGAAGAGGAGCCCGCAT CGCCCATAGGCCACTGTGTGGCCATCTACCACTTTGAAGGGTCCAGCGAGGGCACCATCT CCATGGCCGAGGGCGAGGACCTTAGTCTCATGGAAGAGGACAAAGGTGACGGCTGGACCC GGGTCAGGCGGAAACAGGGAGGTGAGGGCTATGTGCCCACCTCCTACCTCCGTGTCACGC TCAACTGAACCCTGCCAGAGGCGGGAAGAGGGGGGGCTGTTGGCTGCTGCTTCTGGGCCA CGGGGGGCCCCAGGACCTACGCACTTTATTTCTGCCCCCGTGGCTTCGGCTGAGACCTGT GTAACCTGCTGCCCTCCCCCCCACCCTGCCCCGGAGCCCCCACTCAAGGGACCCACTGTG CCTTCCACCATCGATGTACATACTCATGTTTCCCATCTTTTCTTCCTGCCACTCGGCTGG GGCCGTTTTGTTTTATATAAAACAATTATGAAAAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCCTCGGCATAGCCCATGAACCGCGTGCCCTCAGACAGCAGCCTGGGTACCCCCTCGG TACTGAGTGAGATCAGTAAGTCGGTCAAACCGCGGCTAGCATCCTTCCGCAGCCTTCGAG GCAGCCGTGGGACGGTGGTGACCGAGGATTTCAGCCACTTGCCCCCAGAGCAGCAGAGAA AGCGGCTTCAGCAGCAGCTGGAAGAACGAAACCGTGAACTTCAGAAGGAGATTGACCAGA GGGAAGCCCTAAAGAAAATGAAGGACGTATATGAGAAGACACCTCAGATGGGGGACCCAG CCAGCTTGGAACCCCGCATCACAGAAACCCTAAACAACATTGAACGGCTGAAATTGGAAG TACAGAAGTATGAGGCTTGGCTGGCAGAAGCCGAGAGCCGGGTCCTAAGCAACCGAGGGG ACACCCTGGGCCGGCACACTCGGCCCCCAGACCCCCCAGCCAGCGCCCCGCCAGACAGCA GCAGCAGCAACAACGGATCACAGGATAACAAGGAGAGCTCTGAAGAGCCCCCTGCAGAGG AGGGTCAGGATGCTCCCATCTACACGGAGTTTGATGAGGATTTTGAAGAGGAGCCCGCAT CGCCCATAGGCCACTGTGTGGCCATCTACCACTTTGAAGGGTCCAGCGAGGGCACCATCT CCATGGCCGAGGGCGAGGACCTTAGTCTCATGGAAGAGGACAAAGGTGACGGCTGGACCC GGGTCAGGCGGAAACAGGGAGGTGAGGGCTATGTGCCCACCTCCTACCTCCGTGTCACGC TCAACTGAACCCTGCCAGAGGCGGGAAGAGGGGGGGCTGTTGGCTGCTGCTTCTGGGCCA CGGGGGGCCCCAGGACCTACGCACTTTATTTCTGCCCCCGTGGCTTCGGCTGAGACCTGT GTAACCTGCTGCCCTCCCCCCCACCCTGCCCCGGAGCCCCCACTCAAGGGACCCACTGTG CCTTCCACCATCGATGTACATACTCATGTTTCCCATCTTTTCTTCCTGCCACTCGGCTGG GGCCGTTTTGTTTTATATAAAACAATTATGAAAAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 669-788, + strand, RNAz p=0.715107 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 669-788, + strand, RNAz p=0.715107 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AY081141, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 131-246, gnl|bosTau2|chr7 (12888878-12888763) | |
| 131-246, gnl|canFam2|chr20 (56492424-56492291) | |
| 131-246, gnl|danRer3|chr8 (7889243-7889343) | |
| 131-246, gnl|dasNov1|scaffold_125704 (2253-2388) | |
| 131-246, gnl|echTel1|scaffold_265717 (1067-941) | |
| 131-246, gnl|fr1|chrUn (183180683-183180552) | |
| 131-246, gnl|hg17|chr19 (6697456-6697590) | |
| 131-246, gnl|Hg17|chr19 (6697462-6697577) | |
| 131-246, gnl|loxAfr1|scaffold_16803 (27377-27242) | |
| 131-246, gnl|mm7|chr17 (55468948-55469083) | |
| 131-246, gnl|Mm7|chr17 (55468954-55469069) | |
| 131-246, gnl|monDom2|scaffold_85 (5263589-5263736) | |
| 131-246, gnl|oryCun1|scaffold_138977 (4086-3954) | |
| 131-246, gnl|panTro1|chr20 (7077030-7077164) | |
| 131-246, gnl|rheMac2|chr19 (6641334-6641468) | |
| 131-246, gnl|rn3|chrUn (64566827-64566962) | |
| 131-246, gnl|tetNig1|chr18 (8703688-8703554) | |
| 131-246, gnl|xenTro1|scaffold_36 (2396308-2396208) | |
| 373-517, gnl|bosTau2|chr7 (12885944-12885797) | |
| 373-517, gnl|canFam2|chr20 (56490459-56490281) | |
| 373-517, gnl|dasNov1|scaffold_125704 (3834-4002) | |
| 373-517, gnl|echTel1|scaffold_292650 (36-191) | |
| 373-517, gnl|fr1|chrUn (187236968-187237089) | |
| 373-517, gnl|hg17|chr19 (6701291-6701466) | |
| 373-517, gnl|Hg17|chr19 (6701301-6701442) | |
| 373-517, gnl|loxAfr1|scaffold_16803 (24217-24048) | |
| 373-517, gnl|mm7|chr17 (55473345-55473527) | |
| 373-517, gnl|Mm7|chr17 (55473358-55473508) | |
| 373-517, gnl|monDom2|scaffold_85 (5264405-5264565) | |
| 373-517, gnl|oryCun1|scaffold_138977 (1511-1325) | |
| 373-517, gnl|panTro1|chr20 (7080886-7081061) | |
| 373-517, gnl|rheMac2|chr19 (6645452-6645627) | |
| 373-517, gnl|rn3|chrUn (64571268-64571455) | |
| 632-1054, gnl|bosTau2|chr7 (12885465-12885049) | |
| 632-1054, gnl|Hg17|chr19 (6702064-6702520) | |
| 632-1054, gnl|Mm7|chr17 (55474711-55475147) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 131-246, gnl|bosTau2|chr7 (12888878-12888763) | |
| 131-246, gnl|canFam2|chr20 (56492424-56492291) | |
| 131-246, gnl|danRer3|chr8 (7889243-7889343) | |
| 131-246, gnl|dasNov1|scaffold_125704 (2253-2388) | |
| 131-246, gnl|echTel1|scaffold_265717 (1067-941) | |
| 131-246, gnl|fr1|chrUn (183180683-183180552) | |
| 131-246, gnl|hg17|chr19 (6697456-6697590) | |
| 131-246, gnl|Hg17|chr19 (6697462-6697577) | |
| 131-246, gnl|loxAfr1|scaffold_16803 (27377-27242) | |
| 131-246, gnl|mm7|chr17 (55468948-55469083) | |
| 131-246, gnl|Mm7|chr17 (55468954-55469069) | |
| 131-246, gnl|monDom2|scaffold_85 (5263589-5263736) | |
| 131-246, gnl|oryCun1|scaffold_138977 (4086-3954) | |
| 131-246, gnl|panTro1|chr20 (7077030-7077164) | |
| 131-246, gnl|rheMac2|chr19 (6641334-6641468) | |
| 131-246, gnl|rn3|chrUn (64566827-64566962) | |
| 131-246, gnl|tetNig1|chr18 (8703688-8703554) | |
| 131-246, gnl|xenTro1|scaffold_36 (2396308-2396208) | |
| 373-517, gnl|bosTau2|chr7 (12885944-12885797) | |
| 373-517, gnl|canFam2|chr20 (56490459-56490281) | |
| 373-517, gnl|dasNov1|scaffold_125704 (3834-4002) | |
| 373-517, gnl|echTel1|scaffold_292650 (36-191) | |
| 373-517, gnl|fr1|chrUn (187236968-187237089) | |
| 373-517, gnl|hg17|chr19 (6701291-6701466) | |
| 373-517, gnl|Hg17|chr19 (6701301-6701442) | |
| 373-517, gnl|loxAfr1|scaffold_16803 (24217-24048) | |
| 373-517, gnl|mm7|chr17 (55473345-55473527) | |
| 373-517, gnl|Mm7|chr17 (55473358-55473508) | |
| 373-517, gnl|monDom2|scaffold_85 (5264405-5264565) | |
| 373-517, gnl|oryCun1|scaffold_138977 (1511-1325) | |
| 373-517, gnl|panTro1|chr20 (7080886-7081061) | |
| 373-517, gnl|rheMac2|chr19 (6645452-6645627) | |
| 373-517, gnl|rn3|chrUn (64571268-64571455) | |
| 632-1054, gnl|bosTau2|chr7 (12885465-12885049) | |
| 632-1054, gnl|Hg17|chr19 (6702064-6702520) | |
| 632-1054, gnl|Mm7|chr17 (55474711-55475147) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| hlv (0.278513) | |
| jca (0.22792) | |
| mas (0.210305) | |
| nco (0.161734) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.278513) | |
| jca (0.22792) | |
| mas (0.210305) | |
| nco (0.161734) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| med (0.116252) | |
| jej (0.0989218) |