Ss1.1-Pig4-TMW8062C22.3
|
GATTTGGAGGGGGTCCTCAGAATTTTGGAAATGGCCCTGGTAGCTTAGGTGGTCCCCCTG
GTTTTGGAAGCGGCCCTCCTGGCCTTGGAAGTGCCCCCGGGCATTTGAGTGGGCCTCCAG
CATTTGGTCCTGGCCCTGGCCCTGGCCCTGGCCCAATCCATATTGGTGGTCCTCCTGGCT
TTGGATCTAGTTCTGGAAAACCAGGACCAACAGTAATTAAAGTACAGAACATGCCCTTCA
CTGTGTCTATTGATGAGATTTTAGATTTCTTTTATGGCTATCAAGTGATTCCAGGCTCAG
TGTGTTTAAAATACAATGAAAAAGGTATGCCCACAGGTGAAGCTATGGTAGCTTTTGAAT
CTCGGGATGAAGCCACAGCTGCTGTCATTGACTTAAATGACAGACCTATTGGCTCTAGGA
AAGTAAAACTTGTATTAGGGTAGCTGTTCATATCAATTCTTCATAGGGTAGATATAGTGT
TCATAGTGCTGTGATTAATGCATTCAGATTGTTTTCCTAGTGTTTCCAGGTTAGAACCTG
TGGATTGTTTCAATTGCATATAGATTGGTTACCATAACATAGAACATTGGTTGACTGTTT
ACAGAAGACTCACTACCAGGATAAACATTGCTGTATGTAAAGCCGACAGTAAAGCTGTCT
TGAGAGAACACAAAAATGATTTTGGCGTATCATTAGAGAAACCATTTGTAAAACTCAAAT
GACCACATAAAGCTTATCAAGGAGTCTAGATTGTTTTTGTTTTATACCATATGGGATGAA
GAAAATAGAAATGTCATAAGAGCTCATTAAGGGTGCTCTTGCCAGCTGCTGAAAAATAGA
AGCTGGCTACTCTTGGAATTTGGTTTAAAGTTGGACAGATTTGCTTTGTTATAGGATCAA
AGCTTTGTCTAAAGTCCTCATTTTCTTTTAAAATTGAATAAAATCTCTGTATACAGATTC
ACTGTATGTACCTTTATTGCTTCTTGAGGGTTCTTGCTGTATAGACAGTCCTGCTTCTGA
AGTTGCTGCTTTGTTTGCCCAATTGACTCATTTGTAAATGAGCAGAACTGTTTTGTTGTT
TTTTTATATATAAAACTCCACACGTGGTTTGTGCTATAACCTTGAACTTTGATTTCTAAT
GTCACACTTAAAACTGTGTGGAATAAGATATTTGCCACAAAAATAAAATACGGAGGCCCA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GATTTGGAGGGGGTCCTCAGAATTTTGGAAATGGCCCTGGTAGCTTAGGTGGTCCCCCTG
GTTTTGGAAGCGGCCCTCCTGGCCTTGGAAGTGCCCCCGGGCATTTGAGTGGGCCTCCAG
CATTTGGTCCTGGCCCTGGCCCTGGCCCTGGCCCAATCCATATTGGTGGTCCTCCTGGCT
TTGGATCTAGTTCTGGAAAACCAGGACCAACAGTAATTAAAGTACAGAACATGCCCTTCA
CTGTGTCTATTGATGAGATTTTAGATTTCTTTTATGGCTATCAAGTGATTCCAGGCTCAG
TGTGTTTAAAATACAATGAAAAAGGTATGCCCACAGGTGAAGCTATGGTAGCTTTTGAAT
CTCGGGATGAAGCCACAGCTGCTGTCATTGACTTAAATGACAGACCTATTGGCTCTAGGA
AAGTAAAACTTGTATTAGGGTAGCTGTTCATATCAATTCTTCATAGGGTAGATATAGTGT
TCATAGTGCTGTGATTAATGCATTCAGATTGTTTTCCTAGTGTTTCCAGGTTAGAACCTG
TGGATTGTTTCAATTGCATATAGATTGGTTACCATAACATAGAACATTGGTTGACTGTTT
ACAGAAGACTCACTACCAGGATAAACATTGCTGTATGTAAAGCCGACAGTAAAGCTGTCT
TGAGAGAACACAAAAATGATTTTGGCGTATCATTAGAGAAACCATTTGTAAAACTCAAAT
GACCACATAAAGCTTATCAAGGAGTCTAGATTGTTTTTGTTTTATACCATATGGGATGAA
GAAAATAGAAATGTCATAAGAGCTCATTAAGGGTGCTCTTGCCAGCTGCTGAAAAATAGA
AGCTGGCTACTCTTGGAATTTGGTTTAAAGTTGGACAGATTTGCTTTGTTATAGGATCAA
AGCTTTGTCTAAAGTCCTCATTTTCTTTTAAAATTGAATAAAATCTCTGTATACAGATTC
ACTGTATGTACCTTTATTGCTTCTTGAGGGTTCTTGCTGTATAGACAGTCCTGCTTCTGA
AGTTGCTGCTTTGTTTGCCCAATTGACTCATTTGTAAATGAGCAGAACTGTTTTGTTGTT
TTTTTATATATAAAACTCCACACGTGGTTTGTGCTATAACCTTGAACTTTGATTTCTAAT
GTCACACTTAAAACTGTGTGGAATAAGATATTTGCCACAAAAATAAAATACGGAGGCCCA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-235, gnl|bosTau2|chr13 (45096074-45095840) |
|
1-235, gnl|Hg17|chr20 (33704308-33704068) |
|
1-235, gnl|Mm7|chr2 (155836666-155836438) |
| |
|
352-1188, gnl|bosTau2|chr13 (45094595-45093763) |
|
352-1188, gnl|canFam2|chr24 (27548271-27549007) |
|
352-1188, gnl|echTel1|scaffold_314238 (36502-37209) |
|
352-1188, gnl|galGal2|chr20 (968631-967949) |
|
352-1188, gnl|hg17|chr20 (33702979-33703711) |
|
352-1188, gnl|Hg17|chr20 (33703951-33703121) |
|
352-1188, gnl|loxAfr1|scaffold_2459 (35982-36712) |
|
352-1188, gnl|mm7|chr2 (155835360-155836080) |
|
352-1188, gnl|Mm7|chr2 (155836321-155835500) |
|
352-1188, gnl|monDom2|scaffold_6 (11345219-11344490) |
|
352-1188, gnl|oryCun1|scaffold_194049 (8707-9456) |
|
352-1188, gnl|panTro1|chr21 (35723228-35723960) |
|
352-1188, gnl|rheMac2|chr10 (28880689-28879961) |
|
352-1188, gnl|rn3|chr3 (146409319-146410033) |
|
352-1188, gnl|xenTro1|scaffold_35 (2916049-2916649) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-235, gnl|bosTau2|chr13 (45096074-45095840) |
|
1-235, gnl|Hg17|chr20 (33704308-33704068) |
|
1-235, gnl|Mm7|chr2 (155836666-155836438) |
| |
|
352-1188, gnl|bosTau2|chr13 (45094595-45093763) |
|
352-1188, gnl|canFam2|chr24 (27548271-27549007) |
|
352-1188, gnl|echTel1|scaffold_314238 (36502-37209) |
|
352-1188, gnl|galGal2|chr20 (968631-967949) |
|
352-1188, gnl|hg17|chr20 (33702979-33703711) |
|
352-1188, gnl|Hg17|chr20 (33703951-33703121) |
|
352-1188, gnl|loxAfr1|scaffold_2459 (35982-36712) |
|
352-1188, gnl|mm7|chr2 (155835360-155836080) |
|
352-1188, gnl|Mm7|chr2 (155836321-155835500) |
|
352-1188, gnl|monDom2|scaffold_6 (11345219-11344490) |
|
352-1188, gnl|oryCun1|scaffold_194049 (8707-9456) |
|
352-1188, gnl|panTro1|chr21 (35723228-35723960) |
|
352-1188, gnl|rheMac2|chr10 (28880689-28879961) |
|
352-1188, gnl|rn3|chr3 (146409319-146410033) |
|
352-1188, gnl|xenTro1|scaffold_35 (2916049-2916649) |
|
thg (0.380373) |
|
cty (0.20816) |
|
fcc (0.197785) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
kid (0.129735) |
|
ret (0.128733) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
med (0.116252) |
|
thg (0.380373) |
|
cty (0.20816) |
|
fcc (0.197785) |
|
fbs (0.175346) |
|
mcp (0.170648) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
kid (0.129735) |
|
ret (0.128733) |
|
tra (0.123092) |
|
pgl (0.118483) |
|
med (0.116252) |
