Ss1.1-Pig4-TMW8062D23.5
|
TGGCTCCCTGCTCTCCGCGCCACCCTCCTCCGGGCCGCGCTCCCTGAGGGATGGTACTGA
ATTTCGCCGCCACAGGAGCCCGGCTGGAGCGCCCGCCCCGCGGCCTCGACTCCCCGCCGA
GCCGCCAGCGCCTCGGGACGCGATGAGGACCTGGGCTTGTCTGCTGCTCCTCGGCTGTGG
ATACCTCGCCAATGCCCTGGCCGAGGAAGCCGAGATCCCCCGCGAGGTAATTGAGAGGCT
GGCGCACAGTCAGATCCACAGCATCCGGGACCTCCAGCGACTCCTGGAGATAGACTCCGT
AGGGGCCGAGGACCCTTTGGAGACCAGCCTGAGAGCCCACGGGGGCCACGGTGCCAAGCA
TGCATCCGAGAAGCGGCCTGTGCCCGTTCGGAGGAAGAGAAGCATCGAGGAGGCCATCCC
CGCCGTCTGCAAGACCAGGACGGTCATCTACGAGATACCTCGGAGCCAGGTGGACCCCAC
GTCCGCCAACTTTCTGATCTGGCCGCCGTGCGTGGAGGTGAAACGCTGTACTGGCTGCTG
CAACACCAGCAGCGTCAAGTGCCAGCCGTCCCGCGTGCACCACCGCAGTGTCAAGGTGGC
CAAGGTGGAATACGTCAGGAAGAAGCCAAAGTTAAAAGAGGTCCAGGTGCGGCTGGAGGA
GCACCTGGAGTGCACGTGCACGACCGCCGGCCCGACCCCCGACCGCCGAGAAGAGGAGGC
GGATGTCAGGTGAGGATCAGCCCGCAGCCCTTTCCTGGGACACGGATGTACGTGACGTGT
TACATTCCTGAACCTACTATGTACGGTGCTTTTACTGCCAGCGTGGTCTTTGTTCTCCTC
CGTGAAAACTGTCGCCGTGCACACTCTGGAGAACAAAGAGACAGTATACGTTGTTTATAT
GACATCAGAGCAAGTATTGTAGCACTCGGTGAAACAATAAGAAGCTTCCTTGTCAAAAAA
AAAGAGAGAGAGAGAGAGAGAGCGCGTGCAAACAGAACCACGAAACATGACAAACAAAAC
TCACCCACAAAACTATCTAAACGTTGCCGGCATGGAGGGGACGCCCCAGGAAGTGACAGA
CGTCTCGGCGGACTGGATTTCTGTCCAGGGTGGTCACAGGTGCTTTTGCCAAGGACGCAG
AGCCTGCTTTCCGAAGGCCGCGCGGACGCCGACAGGCTCTGCCGGGGCGCGCAGGAGCCA
GGGATGTCTGGAAGCCGCATCTCCTTTGCCGTAGTGTTTAAGTCTATACAGAAACCTTCC
TGAGAGCCTTAAGTGGATTTTTTTTTACACCATAAAGTGATTATTAAGCTTTCCTTTTTA
CTCCTTGCCTAGCTTTTTTTTTTTTTTTTCCTTTTTTTAATTATCTCTTGGATGACATTG
ACACCGGTAACACCAGGCTGCTGTAACAGTCAGGACGATGGGACGGTATCTTTCCTAGCA
GGATGCGAACGAATGAGATGTATTAAAATAAACATG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGGCTCCCTGCTCTCCGCGCCACCCTCCTCCGGGCCGCGCTCCCTGAGGGATGGTACTGA
ATTTCGCCGCCACAGGAGCCCGGCTGGAGCGCCCGCCCCGCGGCCTCGACTCCCCGCCGA
GCCGCCAGCGCCTCGGGACGCGATGAGGACCTGGGCTTGTCTGCTGCTCCTCGGCTGTGG
ATACCTCGCCAATGCCCTGGCCGAGGAAGCCGAGATCCCCCGCGAGGTAATTGAGAGGCT
GGCGCACAGTCAGATCCACAGCATCCGGGACCTCCAGCGACTCCTGGAGATAGACTCCGT
AGGGGCCGAGGACCCTTTGGAGACCAGCCTGAGAGCCCACGGGGGCCACGGTGCCAAGCA
TGCATCCGAGAAGCGGCCTGTGCCCGTTCGGAGGAAGAGAAGCATCGAGGAGGCCATCCC
CGCCGTCTGCAAGACCAGGACGGTCATCTACGAGATACCTCGGAGCCAGGTGGACCCCAC
GTCCGCCAACTTTCTGATCTGGCCGCCGTGCGTGGAGGTGAAACGCTGTACTGGCTGCTG
CAACACCAGCAGCGTCAAGTGCCAGCCGTCCCGCGTGCACCACCGCAGTGTCAAGGTGGC
CAAGGTGGAATACGTCAGGAAGAAGCCAAAGTTAAAAGAGGTCCAGGTGCGGCTGGAGGA
GCACCTGGAGTGCACGTGCACGACCGCCGGCCCGACCCCCGACCGCCGAGAAGAGGAGGC
GGATGTCAGGTGAGGATCAGCCCGCAGCCCTTTCCTGGGACACGGATGTACGTGACGTGT
TACATTCCTGAACCTACTATGTACGGTGCTTTTACTGCCAGCGTGGTCTTTGTTCTCCTC
CGTGAAAACTGTCGCCGTGCACACTCTGGAGAACAAAGAGACAGTATACGTTGTTTATAT
GACATCAGAGCAAGTATTGTAGCACTCGGTGAAACAATAAGAAGCTTCCTTGTCAAAAAA
AAAGAGAGAGAGAGAGAGAGAGCGCGTGCAAACAGAACCACGAAACATGACAAACAAAAC
TCACCCACAAAACTATCTAAACGTTGCCGGCATGGAGGGGACGCCCCAGGAAGTGACAGA
CGTCTCGGCGGACTGGATTTCTGTCCAGGGTGGTCACAGGTGCTTTTGCCAAGGACGCAG
AGCCTGCTTTCCGAAGGCCGCGCGGACGCCGACAGGCTCTGCCGGGGCGCGCAGGAGCCA
GGGATGTCTGGAAGCCGCATCTCCTTTGCCGTAGTGTTTAAGTCTATACAGAAACCTTCC
TGAGAGCCTTAAGTGGATTTTTTTTTACACCATAAAGTGATTATTAAGCTTTCCTTTTTA
CTCCTTGCCTAGCTTTTTTTTTTTTTTTTCCTTTTTTTAATTATCTCTTGGATGACATTG
ACACCGGTAACACCAGGCTGCTGTAACAGTCAGGACGATGGGACGGTATCTTTCCTAGCA
GGATGCGAACGAATGAGATGTATTAAAATAAACATG
|
|
gi|57232546|gb|AAW47931.1| |
Protein identifier
|
gi|57232546|gb|AAW47931.1| |
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407-598, gnl|bosTau2|chr25 (40275921-40275730) |
|
407-598, gnl|canFam2|chr6 (19291823-19291981) |
|
407-598, gnl|danRer3|chr22 (27790473-27790330) |
|
407-598, gnl|dasNov1|scaffold_162771 (632-492) |
|
407-598, gnl|echTel1|scaffold_241673 (2323-2479) |
|
407-598, gnl|fr1|chrUn (103199483-103199640) |
|
407-598, gnl|galGal2|chr14 (4205352-4205193) |
|
407-598, gnl|hg17|chr7_random (643646-643805) |
|
407-598, gnl|loxAfr1|scaffold_26103 (7290-7131) |
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407-598, gnl|mm7|chr5 (137958506-137958347) |
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407-598, gnl|Mm7|chr5 (137958488-137958297) |
|
407-598, gnl|monDom2|scaffold_19 (49281121-49280964) |
|
407-598, gnl|oryCun1|scaffold_61554 (863-707) |
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407-598, gnl|rheMac2|chr3 (38486921-38486762) |
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407-598, gnl|rn3|chr12 (16192753-16192912) |
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407-598, gnl|tetNig1|chr18 (9238279-9238120) |
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407-598, gnl|xenTro1|scaffold_6 (319568-319716) |
| |
|
719-1476, gnl|bosTau2|chr25 (40267654-40266928) |
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719-1476, gnl|Hg17|chr7_random (645477-644650) |
|
719-1476, gnl|Mm7|chr5 (137949341-137948511) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
407-598, gnl|bosTau2|chr25 (40275921-40275730) |
|
407-598, gnl|canFam2|chr6 (19291823-19291981) |
|
407-598, gnl|danRer3|chr22 (27790473-27790330) |
|
407-598, gnl|dasNov1|scaffold_162771 (632-492) |
|
407-598, gnl|echTel1|scaffold_241673 (2323-2479) |
|
407-598, gnl|fr1|chrUn (103199483-103199640) |
|
407-598, gnl|galGal2|chr14 (4205352-4205193) |
|
407-598, gnl|hg17|chr7_random (643646-643805) |
|
407-598, gnl|loxAfr1|scaffold_26103 (7290-7131) |
|
407-598, gnl|mm7|chr5 (137958506-137958347) |
|
407-598, gnl|Mm7|chr5 (137958488-137958297) |
|
407-598, gnl|monDom2|scaffold_19 (49281121-49280964) |
|
407-598, gnl|oryCun1|scaffold_61554 (863-707) |
|
407-598, gnl|rheMac2|chr3 (38486921-38486762) |
|
407-598, gnl|rn3|chr12 (16192753-16192912) |
|
407-598, gnl|tetNig1|chr18 (9238279-9238120) |
|
407-598, gnl|xenTro1|scaffold_6 (319568-319716) |
| |
|
719-1476, gnl|bosTau2|chr25 (40267654-40266928) |
|
719-1476, gnl|Hg17|chr7_random (645477-644650) |
|
719-1476, gnl|Mm7|chr5 (137949341-137948511) |
|
nje (0.49776) |
|
vin (0.332557) |
|
fce (0.271592) |
|
ece (0.229305) |
|
cmu (0.186393) |
|
sin (0.174948) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
fat (0.147427) |
|
pla (0.133672) |
|
cov (0.132153) |
|
eep (0.122564) |
|
cly (0.120642) |
|
ebs (0.118301) |
|
eje (0.0988338) |
|
nje (0.49776) |
|
vin (0.332557) |
|
fce (0.271592) |
|
ece (0.229305) |
|
cmu (0.186393) |
|
sin (0.174948) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
fat (0.147427) |
|
pla (0.133672) |
|
cov (0.132153) |
|
eep (0.122564) |
|
cly (0.120642) |
|
ebs (0.118301) |
|
eje (0.0988338) |
