Non-Coding RNA Search

Ss1.1-Pig4-TMW8062E03.5

Sequence:


               
               GGGAAAGTGGGAAATCTGCCTATAAAATTAATGTTTCAGTTTATTTTTCAGATTACATGC
CTTTCTTTATAAGGGATGCTGGCACAGACCCCTAAAATAAGTTTTGGTAGTATTGTACCT
TTGAAGAGTGGTGAAGGATGCTAATGGATAATCTCCTGAAAGTTGTGGTTTTGAAAGCCT
TAGACTGTGTAGAATTGCTAAACATTGTTTAGCAAATAATGTTGGCTTAGTTTCCACTAA
GTATTGACTTTTCATCACTGAAACAGCAGTGTACCAAGGATTGTAAGCTACTCAAATAGA
CTTTCAACAAGTCTTGGATATGATAGTTTTTAGCCTAATGTGAATTAAATCATCTTAAAA
AGTAGTTTCCTAAAAGCTGATTTATGGAACTTGGGGTGGGAAAGGGAAGGTAGTACTTTT
GAAGTATTTTAGCCATTTTTCTCATTTAAAGAAAGACCTGCCCTCATTTCCTCTTCTCTA
CTTTCTCTCATAATTTTGTTTTAAGAGGAACAGATTGTTTTTAAACTTACTACTCCTGAT
CTTTACATTCTCTGAGAGATCCCGGGGTATTTAGTAGATATTTTAGAAACTTAACCCATT
GGCTTACCTTTAGTGAAACCATAATCCTCTTTGTTTAGCAAACTTCTAAGAGAAGTGCTA
TAAACCACACCACTCTTTACTAGATGTATTATACCACTAATATAAACAGATAATAATTTG
GGAAATTGTAATGTTACGCCTGTGCAATTTTATAAGTGGCATATTATGGCAGATAAAAAT
CTAGATACTTGGCTTTTCTTGGGCAAGCCACTAAGTTGTGGCAGAATATTTTCTGGTGTT
CTTGGACTGCAATTATGCACTATTAAAGTAGTGGCCTGCTACATAACTGCATTTAGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAAGTGGGAAATCTGCCTATAAAATTAATGTTTCAGTTTATTTTTCAGATTACATGC
CTTTCTTTATAAGGGATGCTGGCACAGACCCCTAAAATAAGTTTTGGTAGTATTGTACCT
TTGAAGAGTGGTGAAGGATGCTAATGGATAATCTCCTGAAAGTTGTGGTTTTGAAAGCCT
TAGACTGTGTAGAATTGCTAAACATTGTTTAGCAAATAATGTTGGCTTAGTTTCCACTAA
GTATTGACTTTTCATCACTGAAACAGCAGTGTACCAAGGATTGTAAGCTACTCAAATAGA
CTTTCAACAAGTCTTGGATATGATAGTTTTTAGCCTAATGTGAATTAAATCATCTTAAAA
AGTAGTTTCCTAAAAGCTGATTTATGGAACTTGGGGTGGGAAAGGGAAGGTAGTACTTTT
GAAGTATTTTAGCCATTTTTCTCATTTAAAGAAAGACCTGCCCTCATTTCCTCTTCTCTA
CTTTCTCTCATAATTTTGTTTTAAGAGGAACAGATTGTTTTTAAACTTACTACTCCTGAT
CTTTACATTCTCTGAGAGATCCCGGGGTATTTAGTAGATATTTTAGAAACTTAACCCATT
GGCTTACCTTTAGTGAAACCATAATCCTCTTTGTTTAGCAAACTTCTAAGAGAAGTGCTA
TAAACCACACCACTCTTTACTAGATGTATTATACCACTAATATAAACAGATAATAATTTG
GGAAATTGTAATGTTACGCCTGTGCAATTTTATAAGTGGCATATTATGGCAGATAAAAAT
CTAGATACTTGGCTTTTCTTGGGCAAGCCACTAAGTTGTGGCAGAATATTTTCTGGTGTT
CTTGGACTGCAATTATGCACTATTAAAGTAGTGGCCTGCTACATAACTGCATTTAGCCAG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               156-310, - strand, RNAz p=0.997399
               

               
               605-715, - strand, RNAz p=0.622146
               

               
               782-900, + strand, RNAz p=0.830458

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-310, - strand, RNAz p=0.997399
               

               
               605-715, - strand, RNAz p=0.622146
               

               
               782-900, + strand, RNAz p=0.830458

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr3 (77678022-77678941)
               

               
               1-900, gnl|Hg17|chr1 (35316853-35315943)
               

               
               1-900, gnl|Mm7|chr4 (126476513-126477338)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr3 (77678022-77678941)
               

               
               1-900, gnl|Hg17|chr1 (35316853-35315943)
               

               
               1-900, gnl|Mm7|chr4 (126476513-126477338)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               bla (0.124347)

	156-310, - strand, RNAz p=0.997399
	605-715, - strand, RNAz p=0.622146
	782-900, + strand, RNAz p=0.830458

	1-900, gnl\|bosTau2\|chr3 (77678022-77678941)
	1-900, gnl\|Hg17\|chr1 (35316853-35315943)
	1-900, gnl\|Mm7\|chr4 (126476513-126477338)