Ss1.1-Pig4-TMW8062F05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGAAGGGCTCAGTGGAGATCTGCCACGTGCTGCTGCAGGCTGGAGCCAACATCAACGC AGTGGACAAGCAGCAGCGGACGCCGCTGATGGAGGCTGTGGTGAACAACCACCTGGAGGT GGCTCGTTACATGGTGCAGCGCGGCGGCTGCGTCTACAGCAAGGAGGAAGACGGCTCCAC CTGCCTCCACCACGCAGCCAAAATTGGGAATCTGGAGATGGTGAGCCTGCTGCTCAGCAC GGGTCAGGTGGACGTCAACGCCCAGGACAGCGGGGGCTGGACGCCCATCATCTGGGCTGC GGAGCACAAGCACATCGAGGTGATCCGCATGCTGCTGACACGGGGCGCCGACGTCACCCT CACAGACAACGAGGAGAACATCTGCCTGCACTGGGCCTCCTTCACCGGCAGCGCCGCCAT CGCCGAGGTCCTCCTGAACGCCCGCTGTGACCTCCATGCTGTCAACTACCACGGGGACAC GCCGCTGCACATCGCAGCCCGGGAGAGCTACCACGACTGCGTGCTGTTGTTCCTGTCTCG AGGGGCCAACCCTGAGCTGCGGAACAAGGAGGGGGACACGGCGTGGGACCTGACCCCTGA GCGCTCCGACGTGTGGTTTGCACTCCAGCTCAACCGCAAGCTTCGGCTCGGGGTGGGAAA CCGGGCCATTCGCACTGAGAAGATCATCTGCCGGGACGTGGCCCGGGGCTATGAGAACGT GCCCATTCCCTGTGTCAACGGGGTGGACAGCGAGCCGTGCCCCGAGGATTACAAGTACAT CTCGGAGAACTGCGAGACGTCCACCATGAACATCGACCGCAACATCACGCACCTGCAGCA CTGCACGTGTGTGGACGACTGCTCCAGCTCCAACTGCCTGTGCGGCCAGCTCAGCATCCG CTGCTGGTATGACAAGGATGGGCGGCTGCTGCAGGAATTTAACAAGATCGAGCCCCCGCT GATTTTTGAGTGTAACCAGGCGTGCTCCTGCTGGAGAAACTGCAAGAATCGCGTAGTGCA GAGCGGCATCAAGGTGCGACTGCAGCTCTACCGAACAGCCAAGATGGGCTGGGGGGTCCG CGCCCTGCAGACCATTCCCCAGGGGACTTTTATATGCGAGTATGTGGGAGAGCTGATCTC TGATGCCGAGGCTGACGTGAGAGAGGATGATTCTTATCTCTTCGACTTGGACAACAAGGA TGGTGAAGTCTACTGCATCGATGCCCGTTACTACGGCAACATCAGCCGCTTCATCAACCA CTTGTGTGACCCCAACATCATCCCCGTCCGGGTCTTCATGCTACACCAAGACCTGCGATT TCCGCGCATTGCCTTCTTCAGTTCACGAGACATCCGGACCGGGGAGGAGCTGGGGTTTGA CTATGGTGACCGCTTCTGGGACATCAAAAGCAAATATTTCACCTGCCAGTGTGGCTCTGA GAAGTGCAAGCACTCAGCGGAGGCCATCGCCCTGGAGCAGAGCCGCCTGGCCCGCCTGGA CCCCCACCCCGAGCTGCTGCCCGAGCTCAGCTCCTTGCCCCCCGTCAACCCCTGAGAGTG GACCACACACACCCCTCCCTACCCCAGGACGGCCACCAACTCGGCAGCCACCTCTGCTAC TTGCTGCCCACAGCCCACACCTGGGGGTGCCACAGTCTCCTGTCCCTGCACCCCTCCACA CATTCCTCAGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGAAGGGCTCAGTGGAGATCTGCCACGTGCTGCTGCAGGCTGGAGCCAACATCAACGC AGTGGACAAGCAGCAGCGGACGCCGCTGATGGAGGCTGTGGTGAACAACCACCTGGAGGT GGCTCGTTACATGGTGCAGCGCGGCGGCTGCGTCTACAGCAAGGAGGAAGACGGCTCCAC CTGCCTCCACCACGCAGCCAAAATTGGGAATCTGGAGATGGTGAGCCTGCTGCTCAGCAC GGGTCAGGTGGACGTCAACGCCCAGGACAGCGGGGGCTGGACGCCCATCATCTGGGCTGC GGAGCACAAGCACATCGAGGTGATCCGCATGCTGCTGACACGGGGCGCCGACGTCACCCT CACAGACAACGAGGAGAACATCTGCCTGCACTGGGCCTCCTTCACCGGCAGCGCCGCCAT CGCCGAGGTCCTCCTGAACGCCCGCTGTGACCTCCATGCTGTCAACTACCACGGGGACAC GCCGCTGCACATCGCAGCCCGGGAGAGCTACCACGACTGCGTGCTGTTGTTCCTGTCTCG AGGGGCCAACCCTGAGCTGCGGAACAAGGAGGGGGACACGGCGTGGGACCTGACCCCTGA GCGCTCCGACGTGTGGTTTGCACTCCAGCTCAACCGCAAGCTTCGGCTCGGGGTGGGAAA CCGGGCCATTCGCACTGAGAAGATCATCTGCCGGGACGTGGCCCGGGGCTATGAGAACGT GCCCATTCCCTGTGTCAACGGGGTGGACAGCGAGCCGTGCCCCGAGGATTACAAGTACAT CTCGGAGAACTGCGAGACGTCCACCATGAACATCGACCGCAACATCACGCACCTGCAGCA CTGCACGTGTGTGGACGACTGCTCCAGCTCCAACTGCCTGTGCGGCCAGCTCAGCATCCG CTGCTGGTATGACAAGGATGGGCGGCTGCTGCAGGAATTTAACAAGATCGAGCCCCCGCT GATTTTTGAGTGTAACCAGGCGTGCTCCTGCTGGAGAAACTGCAAGAATCGCGTAGTGCA GAGCGGCATCAAGGTGCGACTGCAGCTCTACCGAACAGCCAAGATGGGCTGGGGGGTCCG CGCCCTGCAGACCATTCCCCAGGGGACTTTTATATGCGAGTATGTGGGAGAGCTGATCTC TGATGCCGAGGCTGACGTGAGAGAGGATGATTCTTATCTCTTCGACTTGGACAACAAGGA TGGTGAAGTCTACTGCATCGATGCCCGTTACTACGGCAACATCAGCCGCTTCATCAACCA CTTGTGTGACCCCAACATCATCCCCGTCCGGGTCTTCATGCTACACCAAGACCTGCGATT TCCGCGCATTGCCTTCTTCAGTTCACGAGACATCCGGACCGGGGAGGAGCTGGGGTTTGA CTATGGTGACCGCTTCTGGGACATCAAAAGCAAATATTTCACCTGCCAGTGTGGCTCTGA GAAGTGCAAGCACTCAGCGGAGGCCATCGCCCTGGAGCAGAGCCGCCTGGCCCGCCTGGA CCCCCACCCCGAGCTGCTGCCCGAGCTCAGCTCCTTGCCCCCCGTCAACCCCTGAGAGTG GACCACACACACCCCTCCCTACCCCAGGACGGCCACCAACTCGGCAGCCACCTCTGCTAC TTGCTGCCCACAGCCCACACCTGGGGGTGCCACAGTCTCCTGTCCCTGCACCCCTCCACA CATTCCTCAGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1374-1493, - strand, RNAz p=0.938946 | |
| 1534-1692, - strand, RNAz p=0.997261 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1374-1493, - strand, RNAz p=0.938946 | |
| 1534-1692, - strand, RNAz p=0.997261 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 36-164, gnl|bosTau2|chr23 (23486568-23486440) | |
| 36-164, gnl|Hg17|chr6 (31962658-31962530) | |
| 36-164, gnl|Mm7|chr17 (33004607-33004735) | |
| 261-371, gnl|bosTau2|chr23 (23485555-23485445) | |
| 261-371, gnl|canFam2|chr12 (4348472-4348586) | |
| 261-371, gnl|danRer3|chrNA (54976280-54976396) | |
| 261-371, gnl|dasNov1|scaffold_50380 (912-797) | |
| 261-371, gnl|echTel1|scaffold_287301 (3222-3337) | |
| 261-371, gnl|fr1|chrUn (203992223-203992113) | |
| 261-371, gnl|hg17|chr6 (31960662-31960778) | |
| 261-371, gnl|Hg17|chr6 (31960777-31960667) | |
| 261-371, gnl|loxAfr1|scaffold_170415 (221-337) | |
| 261-371, gnl|mm7|chr17 (33005376-33005260) | |
| 261-371, gnl|Mm7|chr17 (33005259-33005369) | |
| 261-371, gnl|monDom2|scaffold_42 (17466419-17466303) | |
| 261-371, gnl|oryCun1|scaffold_69532 (5908-6012) | |
| 261-371, gnl|panTro1|chr5 (32365710-32365826) | |
| 261-371, gnl|rheMac2|chr4 (31535685-31535801) | |
| 261-371, gnl|rn3|chr20 (4028086-4028202) | |
| 261-371, gnl|tetNig1|chrUn_random (96823412-96823526) | |
| 261-371, gnl|xenTro1|scaffold_1207 (100214-100330) | |
| 526-694, gnl|bosTau2|chr23 (23485096-23484928) | |
| 526-694, gnl|Hg17|chr6 (31960315-31960147) | |
| 526-694, gnl|Mm7|chr17 (33005728-33005896) | |
| 915-1033, gnl|bosTau2|chr23 (23483384-23483266) | |
| 915-1033, gnl|Hg17|chr6 (31958767-31958649) | |
| 915-1033, gnl|Mm7|chr17 (33008451-33008569) | |
| 1374-1692, gnl|bosTau2|chr23 (23480900-23480581) | |
| 1374-1692, gnl|Hg17|chr6 (31956021-31955705) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 36-164, gnl|bosTau2|chr23 (23486568-23486440) | |
| 36-164, gnl|Hg17|chr6 (31962658-31962530) | |
| 36-164, gnl|Mm7|chr17 (33004607-33004735) | |
| 261-371, gnl|bosTau2|chr23 (23485555-23485445) | |
| 261-371, gnl|canFam2|chr12 (4348472-4348586) | |
| 261-371, gnl|danRer3|chrNA (54976280-54976396) | |
| 261-371, gnl|dasNov1|scaffold_50380 (912-797) | |
| 261-371, gnl|echTel1|scaffold_287301 (3222-3337) | |
| 261-371, gnl|fr1|chrUn (203992223-203992113) | |
| 261-371, gnl|hg17|chr6 (31960662-31960778) | |
| 261-371, gnl|Hg17|chr6 (31960777-31960667) | |
| 261-371, gnl|loxAfr1|scaffold_170415 (221-337) | |
| 261-371, gnl|mm7|chr17 (33005376-33005260) | |
| 261-371, gnl|Mm7|chr17 (33005259-33005369) | |
| 261-371, gnl|monDom2|scaffold_42 (17466419-17466303) | |
| 261-371, gnl|oryCun1|scaffold_69532 (5908-6012) | |
| 261-371, gnl|panTro1|chr5 (32365710-32365826) | |
| 261-371, gnl|rheMac2|chr4 (31535685-31535801) | |
| 261-371, gnl|rn3|chr20 (4028086-4028202) | |
| 261-371, gnl|tetNig1|chrUn_random (96823412-96823526) | |
| 261-371, gnl|xenTro1|scaffold_1207 (100214-100330) | |
| 526-694, gnl|bosTau2|chr23 (23485096-23484928) | |
| 526-694, gnl|Hg17|chr6 (31960315-31960147) | |
| 526-694, gnl|Mm7|chr17 (33005728-33005896) | |
| 915-1033, gnl|bosTau2|chr23 (23483384-23483266) | |
| 915-1033, gnl|Hg17|chr6 (31958767-31958649) | |
| 915-1033, gnl|Mm7|chr17 (33008451-33008569) | |
| 1374-1692, gnl|bosTau2|chr23 (23480900-23480581) | |
| 1374-1692, gnl|Hg17|chr6 (31956021-31955705) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| cga (0.279096) | |
| nmm (0.265604) | |
| eep (0.245128) | |
| ece (0.229305) | |
| eye (0.170503) | |
| nje (0.16592) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| nmm (0.265604) | |
| eep (0.245128) | |
| ece (0.229305) | |
| eye (0.170503) | |
| nje (0.16592) | |
| pla (0.133672) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) |