Ss1.1-Pig4-TMW8062F11.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT CAGGAACTGGTATTTATTATCAAAGTCATATTCGATGTCAACAAGATGCCACAACTACAA AAAAAATTGCGCACATTGCAATCTCAATGCAAACAGTCAAATGGAACCCCAGTCATTAAA AAAGTAATTCAAATTACCCCAAAAAGCAACTGAATTTTTTAAACATCTTTATACATCCAG CCAACAAATTAAAATGGTTAACAAGAAAAAATACAAATTCAGAGGTCTGGTCTCGATGTT TAAAAAAGGCAACTGCTTAAGCATTTCTATCGATTCGAACATCAATCTCTCGGCCACTCA GCTTCATCCCATTCATCATCCGGCAGGCTCTCTCAGCCACCTCTGGCGACTCAAACTTAA CCACACCGCACCCCTTGGACTTCCCATTCTCCATCTTGATGTCGGCATACAGCACGTGGC CACATTCGTTGAATTTGTCTTTTAGCATCTTCCATGTAAAATCAAATGGGAGATTTCTCA CAAATATCTGGCAGGCCTTCCTGGCCACCCCAGGTGCATGGCCTCCAGCTCCACCAAAGG AACCTGCGAAGCTTCCTCCAAAGTTGCCACGCTCCATCTCGATGGCGCGGTCAAAGCTGG CACCGCCACCGCCACCCATGGCGAGGCCCATGCGCTCAATGCCAGCACCCAGGGCCGGGC CCATGGCAGGACCCATGCGCTCCAGGCTGTTGGCGCCCATACGCTCCAGGCCCATGCGCT CCAGGCTGTTGGCGCCCATACGCTCCAGGCCCATGCGCTCCAGGTTGTTGGCGCCCATGC GCTCCAGGCCAGTGGCCATGCGATCCATCACAGGGCCCATGCGCTCCAGGCCTGCCCCCA TGCCTGCGGGCACCATGCGCTCCATGCCCAGGCCCATGCGCTCAATGGCAGGGCCCATCC GCTCCACACCAGAGCCCATCCTCTCGATGGTCTGGCCCACACGGTCAATGGGTGCGGCCA TACGCTCAAGGCCAAAGCCCATGCCGGCACCCATGCGCTCCACGCCAGAGCCGATGCGCT CCATGGTCTGGCCCATGCGCTCGATGCTGGAGGCCATGTGGTCGAGGCCCAATGGACCCA TACGCTCGATGCCTGAGCCCATGCGCTCGACTGAGCCCATGCGGTCCATGACCAGGCCCA TACGCTCAATCTCAGAGCCCACACGATCCATGCCGTGGCCCAGGCCTGCGCCCATGCGCT CCATGCCGGCACCCCCAATGCGGTCAATGCCGGGGCCCATCCTTTCAATTCCAGGGACAC TGCCTCCGCCTCCACCTCCTCCCTGCTTTGCAATGATCTCTCCTCTCTTCAGGGCATTAC TTAGGATTTCATTTATTCTGCCCATGTTCATCCCAGATCCAAATCGACCCATGTTTTCCA TACCACCACCAAAGGGTCCCTCCATGCCTCCCATTTTATTTATTCCAAATCCTATGCCTT CCATTCCCATTCCTGCAGGTCCTATGTTTCCCATTCCAATGCCTTTATTCAAATGATTGG CATCGATAGGCTGTCCTCCTGGTCCTAACCCCATGCCAATACCACCAAGTCCATGGGGAA GTTGTTGTGGACGCTCAGGAGGGAAAAAATCTCCCTTTGGTAAGGCTCTCTCATCCATTT TCACATGCATTGGTCTGTCAAATAGCAGTTGGCCATTAAACATAGATATAGCTTGCACAG CTTCAATGGACTGTTCAAAAGTAACAGTGCCTATTCCACGACTTTTTCCATCTTTATCTT CAAGAATGTCTGCTCGGACCACCACACCAGCCATACTAAAAACTTCCTTCAGTTTCTTCC AGCCAACTTTATAATCCAGATTTGCTACAAATACTGTACTTCCAAGTCTTCCAGCCTGTA ATGCATGGATAATCTCATTTGGGATGTTAGGATTATTTAGGATACTGGGTGGGATATTAA TCATTCCTGGGCCACCTGGTCCCATACCCATCCCACCAGTCGTAGCCATCACCTTTTGCA TTGCTCTCCTGGCATGTTCACCATCAGGATCTTCTTTGACTTTCAGTGGTCTTCCACTCA GACTATGCTTGTTTAGAACTTCAGCAGCTTTTTTCATGCTCTCCTCCATCTTGAATTCAA CAACGGCACATCCCCTTGACTTTCCTTCAGCGTCCATTAAGAGCTCCACGTATGTTACCT CACCAACTTTTTCTTTAACCAGGTCTTTAAGTGACTGCCATTTCACATCAAAAGGTATGT TTGTAATGAAGGCTCTGTATCTTTTAGTTGGATTGGCATATGGCTCAAAGCGATTGCCTC CTCTCTTTATGTTTTTCTCCTTCCTTTTCTCATTCTGAGCAGGTCGTTCTCCTTCACCTT TCGGGCCTGGAGCTCCGTTGCCGGTCGGCACGCCGGGCGCGCCGCTCTCCTCCTCCATTT TAGGCTCTGTCGCCGCCACCTCGGCCGCCGCTTCGACCCCTGCCGCCATTTTCTTCGCGT CTGGGCTTTGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT CAGGAACTGGTATTTATTATCAAAGTCATATTCGATGTCAACAAGATGCCACAACTACAA AAAAAATTGCGCACATTGCAATCTCAATGCAAACAGTCAAATGGAACCCCAGTCATTAAA AAAGTAATTCAAATTACCCCAAAAAGCAACTGAATTTTTTAAACATCTTTATACATCCAG CCAACAAATTAAAATGGTTAACAAGAAAAAATACAAATTCAGAGGTCTGGTCTCGATGTT TAAAAAAGGCAACTGCTTAAGCATTTCTATCGATTCGAACATCAATCTCTCGGCCACTCA GCTTCATCCCATTCATCATCCGGCAGGCTCTCTCAGCCACCTCTGGCGACTCAAACTTAA CCACACCGCACCCCTTGGACTTCCCATTCTCCATCTTGATGTCGGCATACAGCACGTGGC CACATTCGTTGAATTTGTCTTTTAGCATCTTCCATGTAAAATCAAATGGGAGATTTCTCA CAAATATCTGGCAGGCCTTCCTGGCCACCCCAGGTGCATGGCCTCCAGCTCCACCAAAGG AACCTGCGAAGCTTCCTCCAAAGTTGCCACGCTCCATCTCGATGGCGCGGTCAAAGCTGG CACCGCCACCGCCACCCATGGCGAGGCCCATGCGCTCAATGCCAGCACCCAGGGCCGGGC CCATGGCAGGACCCATGCGCTCCAGGCTGTTGGCGCCCATACGCTCCAGGCCCATGCGCT CCAGGCTGTTGGCGCCCATACGCTCCAGGCCCATGCGCTCCAGGTTGTTGGCGCCCATGC GCTCCAGGCCAGTGGCCATGCGATCCATCACAGGGCCCATGCGCTCCAGGCCTGCCCCCA TGCCTGCGGGCACCATGCGCTCCATGCCCAGGCCCATGCGCTCAATGGCAGGGCCCATCC GCTCCACACCAGAGCCCATCCTCTCGATGGTCTGGCCCACACGGTCAATGGGTGCGGCCA TACGCTCAAGGCCAAAGCCCATGCCGGCACCCATGCGCTCCACGCCAGAGCCGATGCGCT CCATGGTCTGGCCCATGCGCTCGATGCTGGAGGCCATGTGGTCGAGGCCCAATGGACCCA TACGCTCGATGCCTGAGCCCATGCGCTCGACTGAGCCCATGCGGTCCATGACCAGGCCCA TACGCTCAATCTCAGAGCCCACACGATCCATGCCGTGGCCCAGGCCTGCGCCCATGCGCT CCATGCCGGCACCCCCAATGCGGTCAATGCCGGGGCCCATCCTTTCAATTCCAGGGACAC TGCCTCCGCCTCCACCTCCTCCCTGCTTTGCAATGATCTCTCCTCTCTTCAGGGCATTAC TTAGGATTTCATTTATTCTGCCCATGTTCATCCCAGATCCAAATCGACCCATGTTTTCCA TACCACCACCAAAGGGTCCCTCCATGCCTCCCATTTTATTTATTCCAAATCCTATGCCTT CCATTCCCATTCCTGCAGGTCCTATGTTTCCCATTCCAATGCCTTTATTCAAATGATTGG CATCGATAGGCTGTCCTCCTGGTCCTAACCCCATGCCAATACCACCAAGTCCATGGGGAA GTTGTTGTGGACGCTCAGGAGGGAAAAAATCTCCCTTTGGTAAGGCTCTCTCATCCATTT TCACATGCATTGGTCTGTCAAATAGCAGTTGGCCATTAAACATAGATATAGCTTGCACAG CTTCAATGGACTGTTCAAAAGTAACAGTGCCTATTCCACGACTTTTTCCATCTTTATCTT CAAGAATGTCTGCTCGGACCACCACACCAGCCATACTAAAAACTTCCTTCAGTTTCTTCC AGCCAACTTTATAATCCAGATTTGCTACAAATACTGTACTTCCAAGTCTTCCAGCCTGTA ATGCATGGATAATCTCATTTGGGATGTTAGGATTATTTAGGATACTGGGTGGGATATTAA TCATTCCTGGGCCACCTGGTCCCATACCCATCCCACCAGTCGTAGCCATCACCTTTTGCA TTGCTCTCCTGGCATGTTCACCATCAGGATCTTCTTTGACTTTCAGTGGTCTTCCACTCA GACTATGCTTGTTTAGAACTTCAGCAGCTTTTTTCATGCTCTCCTCCATCTTGAATTCAA CAACGGCACATCCCCTTGACTTTCCTTCAGCGTCCATTAAGAGCTCCACGTATGTTACCT CACCAACTTTTTCTTTAACCAGGTCTTTAAGTGACTGCCATTTCACATCAAAAGGTATGT TTGTAATGAAGGCTCTGTATCTTTTAGTTGGATTGGCATATGGCTCAAAGCGATTGCCTC CTCTCTTTATGTTTTTCTCCTTCCTTTTCTCATTCTGAGCAGGTCGTTCTCCTTCACCTT TCGGGCCTGGAGCTCCGTTGCCGGTCGGCACGCCGGGCGCGCCGCTCTCCTCCTCCATTT TAGGCTCTGTCGCCGCCACCTCGGCCGCCGCTTCGACCCCTGCCGCCATTTTCTTCGCGT CTGGGCTTTGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 356-481, - strand, RNAz p=0.995447 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 356-481, - strand, RNAz p=0.995447 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 317-481, gnl|bosTau2|chr10 (43063873-43063709) | |
| 317-481, gnl|canFam2|chr30 (17390761-17390933) | |
| 317-481, gnl|danRer3|chrNA (11131488-11131660) | |
| 317-481, gnl|dasNov1|scaffold_511 (6263-6435) | |
| 317-481, gnl|echTel1|scaffold_299241 (3242-3412) | |
| 317-481, gnl|fr1|chrUn (65157894-65157727) | |
| 317-481, gnl|galGal2|chr10 (10624787-10624958) | |
| 317-481, gnl|hg17|chr15 (46222399-46222571) | |
| 317-481, gnl|Hg17|chr15 (46222397-46222561) | |
| 317-481, gnl|loxAfr1|scaffold_32195 (3603-3774) | |
| 317-481, gnl|mm7|chr2 (124829729-124829901) | |
| 317-481, gnl|Mm7|chr2 (124829727-124829891) | |
| 317-481, gnl|monDom2|scaffold_12 (20944203-20944031) | |
| 317-481, gnl|oryCun1|scaffold_214697 (14933-14775) | |
| 317-481, gnl|panTro1|chr16 (46196516-46196688) | |
| 317-481, gnl|rheMac2|chr7 (26468887-26469059) | |
| 317-481, gnl|rn3|chr3 (112293120-112293291) | |
| 317-481, gnl|tetNig1|chr5 (10043279-10043446) | |
| 317-481, gnl|xenTro1|scaffold_27 (2601817-2602008) | |
| 1722-1882, gnl|bosTau2|chr10 (43046048-43045888) | |
| 1722-1882, gnl|Hg17|chr15 (46238254-46238414) | |
| 1722-1882, gnl|Mm7|chr2 (124850519-124850679) | |
| 2227-2397, gnl|bosTau2|chr7 (12030448-12030278) | |
| 2227-2397, gnl|canFam2|chr20 (56004651-56004846) | |
| 2227-2397, gnl|danRer3|chr22 (25733971-25733799) | |
| 2227-2397, gnl|dasNov1|scaffold_5184 (46762-46567) | |
| 2227-2397, gnl|echTel1|scaffold_112878 (375-180) | |
| 2227-2397, gnl|fr1|chrUn (161350334-161350515) | |
| 2227-2397, gnl|galGal2|chr28 (482216-482026) | |
| 2227-2397, gnl|hg17|chr19 (8426288-8426483) | |
| 2227-2397, gnl|Hg17|chr19 (8426458-8426288) | |
| 2227-2397, gnl|loxAfr1|scaffold_14476 (9101-8906) | |
| 2227-2397, gnl|mm7|chr17 (31752089-31751897) | |
| 2227-2397, gnl|Mm7|chr17 (31751920-31752087) | |
| 2227-2397, gnl|monDom2|scaffold_136 (286583-286389) | |
| 2227-2397, gnl|oryCun1|scaffold_195359 (5723-5527) | |
| 2227-2397, gnl|panTro1|chr20 (8781675-8781870) | |
| 2227-2397, gnl|rheMac2|chr19 (8442772-8442967) | |
| 2227-2397, gnl|rn3|chr7 (16181463-16181271) | |
| 2227-2397, gnl|tetNig1|chr1 (11656369-11656185) | |
| 2227-2397, gnl|xenTro1|scaffold_644 (35894-36070) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 317-481, gnl|bosTau2|chr10 (43063873-43063709) | |
| 317-481, gnl|canFam2|chr30 (17390761-17390933) | |
| 317-481, gnl|danRer3|chrNA (11131488-11131660) | |
| 317-481, gnl|dasNov1|scaffold_511 (6263-6435) | |
| 317-481, gnl|echTel1|scaffold_299241 (3242-3412) | |
| 317-481, gnl|fr1|chrUn (65157894-65157727) | |
| 317-481, gnl|galGal2|chr10 (10624787-10624958) | |
| 317-481, gnl|hg17|chr15 (46222399-46222571) | |
| 317-481, gnl|Hg17|chr15 (46222397-46222561) | |
| 317-481, gnl|loxAfr1|scaffold_32195 (3603-3774) | |
| 317-481, gnl|mm7|chr2 (124829729-124829901) | |
| 317-481, gnl|Mm7|chr2 (124829727-124829891) | |
| 317-481, gnl|monDom2|scaffold_12 (20944203-20944031) | |
| 317-481, gnl|oryCun1|scaffold_214697 (14933-14775) | |
| 317-481, gnl|panTro1|chr16 (46196516-46196688) | |
| 317-481, gnl|rheMac2|chr7 (26468887-26469059) | |
| 317-481, gnl|rn3|chr3 (112293120-112293291) | |
| 317-481, gnl|tetNig1|chr5 (10043279-10043446) | |
| 317-481, gnl|xenTro1|scaffold_27 (2601817-2602008) | |
| 1722-1882, gnl|bosTau2|chr10 (43046048-43045888) | |
| 1722-1882, gnl|Hg17|chr15 (46238254-46238414) | |
| 1722-1882, gnl|Mm7|chr2 (124850519-124850679) | |
| 2227-2397, gnl|bosTau2|chr7 (12030448-12030278) | |
| 2227-2397, gnl|canFam2|chr20 (56004651-56004846) | |
| 2227-2397, gnl|danRer3|chr22 (25733971-25733799) | |
| 2227-2397, gnl|dasNov1|scaffold_5184 (46762-46567) | |
| 2227-2397, gnl|echTel1|scaffold_112878 (375-180) | |
| 2227-2397, gnl|fr1|chrUn (161350334-161350515) | |
| 2227-2397, gnl|galGal2|chr28 (482216-482026) | |
| 2227-2397, gnl|hg17|chr19 (8426288-8426483) | |
| 2227-2397, gnl|Hg17|chr19 (8426458-8426288) | |
| 2227-2397, gnl|loxAfr1|scaffold_14476 (9101-8906) | |
| 2227-2397, gnl|mm7|chr17 (31752089-31751897) | |
| 2227-2397, gnl|Mm7|chr17 (31751920-31752087) | |
| 2227-2397, gnl|monDom2|scaffold_136 (286583-286389) | |
| 2227-2397, gnl|oryCun1|scaffold_195359 (5723-5527) | |
| 2227-2397, gnl|panTro1|chr20 (8781675-8781870) | |
| 2227-2397, gnl|rheMac2|chr19 (8442772-8442967) | |
| 2227-2397, gnl|rn3|chr7 (16181463-16181271) | |
| 2227-2397, gnl|tetNig1|chr1 (11656369-11656185) | |
| 2227-2397, gnl|xenTro1|scaffold_644 (35894-36070) |
| Expressed library(ies): 50 entry(ies) | More info |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
| ill (0.877963) | |
| cki (0.660939) | |
| fcc (0.593354) | |
| lnt (0.569233) | |
| cmu (0.55918) | |
| che (0.545256) | |
| duo (0.518403) | |
| eye (0.511509) | |
| cut (0.509771) | |
| cje (0.495704) | |
| ecc (0.46014) | |
| hyp (0.42851) | |
| hlv (0.417769) | |
| hea (0.408998) | |
| ova (0.387397) | |
| elu (0.385356) | |
| ese (0.379507) | |
| fbs (0.350693) | |
| med (0.348756) | |
| spc (0.340097) | |
| vin (0.332557) | |
| nco (0.323468) | |
| spl (0.286369) | |
| cst (0.280073) | |
| fce (0.271592) | |
| jca (0.22792) | |
| tes (0.207814) | |
| jej (0.197844) | |
| eje (0.197668) | |
| col (0.195008) | |
| fty (0.17584) | |
| sin (0.174948) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lin (0.145603) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nca (0.136874) | |
| cov (0.132153) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 50 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.877963) | |
| cki (0.660939) | |
| fcc (0.593354) | |
| lnt (0.569233) | |
| cmu (0.55918) | |
| che (0.545256) | |
| duo (0.518403) | |
| eye (0.511509) | |
| cut (0.509771) | |
| cje (0.495704) | |
| ecc (0.46014) | |
| hyp (0.42851) | |
| hlv (0.417769) | |
| hea (0.408998) | |
| ova (0.387397) | |
| elu (0.385356) | |
| ese (0.379507) | |
| fbs (0.350693) | |
| med (0.348756) | |
| spc (0.340097) | |
| vin (0.332557) | |
| nco (0.323468) | |
| spl (0.286369) | |
| cst (0.280073) | |
| fce (0.271592) | |
| jca (0.22792) | |
| tes (0.207814) | |
| jej (0.197844) | |
| eje (0.197668) | |
| col (0.195008) | |
| fty (0.17584) | |
| sin (0.174948) | |
| fco (0.157208) | |
| eli (0.151814) | |
| lin (0.145603) | |
| pty (0.142714) | |
| csk (0.140746) | |
| nca (0.136874) | |
| cov (0.132153) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |