Non-Coding RNA Search

Ss1.1-Pig4-TMW8062F12.5

Sequence:


               
               TCTGCCGTCGTACGTTGGCCCCTCCGTCGTGATGGCCTCGTCGCCTCTCCTGCCGTTCCT
GCCTCTGCTGCTGCTGCTGCTGCTGGAGGTCCCCGCGGCAGCGCCGGCGTCCCCGCTGCA
GTCACTCCTCCAGGGGGCGGCCCCCTGCAAGGCCGGTGAGCCATGCCTGCAGAGACCCGT
GGGGAAGTCTGACCCTCCACCTGTCAACGTGAACCTCTACTATGAGTCGCTGTGCAATGG
CTGCCGGTACTTCCTAGTCCGAGAGCTCTTCCCCACGTGGCTGATGGTCTGGGAAATCCT
CAATGTCACACTGGTACCCTATGGAAACGCCCAGGAACGAAATGTCAGCGGCAGGTGGGA
ATTTACGTGCCAGCACGGCGAGCAGGAGTGCAAGATGAACAAGGTGGAGGCCTGCCTTTT
GGACAAGCTGGAGAAGAACATGGCCTTTCTGACCATTGTCTGCATAGAGGAACTGGATGA
CATGGAGAAAAATCTGGAACCATGCCTGCAGATCTATGCTCCAAAAGTATCCCCAGACTC
TATCATGGAGTGTGCAATGGGGGACCGTGGCATGCAGCTCTTACACATTAATGCCCAACT
CACAGATGCTCTGAAGCCACCCCATGAATATGTGCCCTGGGTCGTCGTCAATGGGAAACC
TATGACAGAGAAGGACCAGCTCTTACGCCTCGTCTGCCAGTTGTACGAGGGTGAGAAGCC
GGATGTCTGCCAAATCTTGGCCAGCTCCCACAAGGAAGTCTGCTTCAAGTGACAGCTGGT
GCCCTGAGAGAGAGCTAATACAGGAAGAGCAAGATCCCACCTGCCCTCATTTTCTGATCC
CTGACTCTCAGCAGCCACTACTCATCATGCAGATGATGTCTACACATTCCACAAAGCCCA
GACTCAAAATTCTGCCCCAAGGTCAAGAATCTTGCCCACTGAGAATGGTGCTACATTGAA
ACTTGTTTAATAAACACTTTGAGATGTTGTGATTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGCCGTCGTACGTTGGCCCCTCCGTCGTGATGGCCTCGTCGCCTCTCCTGCCGTTCCT
GCCTCTGCTGCTGCTGCTGCTGCTGGAGGTCCCCGCGGCAGCGCCGGCGTCCCCGCTGCA
GTCACTCCTCCAGGGGGCGGCCCCCTGCAAGGCCGGTGAGCCATGCCTGCAGAGACCCGT
GGGGAAGTCTGACCCTCCACCTGTCAACGTGAACCTCTACTATGAGTCGCTGTGCAATGG
CTGCCGGTACTTCCTAGTCCGAGAGCTCTTCCCCACGTGGCTGATGGTCTGGGAAATCCT
CAATGTCACACTGGTACCCTATGGAAACGCCCAGGAACGAAATGTCAGCGGCAGGTGGGA
ATTTACGTGCCAGCACGGCGAGCAGGAGTGCAAGATGAACAAGGTGGAGGCCTGCCTTTT
GGACAAGCTGGAGAAGAACATGGCCTTTCTGACCATTGTCTGCATAGAGGAACTGGATGA
CATGGAGAAAAATCTGGAACCATGCCTGCAGATCTATGCTCCAAAAGTATCCCCAGACTC
TATCATGGAGTGTGCAATGGGGGACCGTGGCATGCAGCTCTTACACATTAATGCCCAACT
CACAGATGCTCTGAAGCCACCCCATGAATATGTGCCCTGGGTCGTCGTCAATGGGAAACC
TATGACAGAGAAGGACCAGCTCTTACGCCTCGTCTGCCAGTTGTACGAGGGTGAGAAGCC
GGATGTCTGCCAAATCTTGGCCAGCTCCCACAAGGAAGTCTGCTTCAAGTGACAGCTGGT
GCCCTGAGAGAGAGCTAATACAGGAAGAGCAAGATCCCACCTGCCCTCATTTTCTGATCC
CTGACTCTCAGCAGCCACTACTCATCATGCAGATGATGTCTACACATTCCACAAAGCCCA
GACTCAAAATTCTGCCCCAAGGTCAAGAATCTTGCCCACTGAGAATGGTGCTACATTGAA
ACTTGTTTAATAAACACTTTGAGATGTTGTGATTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27668755|ref|XP_214298.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27668755|ref|XP_214298.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               841-953, - strand, RNAz p=0.81503

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               841-953, - strand, RNAz p=0.81503

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               124-994, gnl|bosTau2|chr19 (6173032-6172154)
               

               
               124-994, gnl|Hg17|chr19 (18146848-18149946)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-994, gnl|bosTau2|chr19 (6173032-6172154)
               

               
               124-994, gnl|Hg17|chr19 (18146848-18149946)

Expressed library(ies): 32 entry(ies)

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Expressed library(ies): 32 entry(ies)

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               cag (1.36075)
               

               
               cly (0.723851)
               

               
               cga (0.558191)
               

               
               ute (0.531138)
               

               
               nmm (0.398406)
               

               
               ill (0.351185)
               

               
               cli (0.305623)
               

               
               jej (0.296765)
               

               
               ski (0.29347)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (1.36075)
               

               
               cly (0.723851)
               

               
               cga (0.558191)
               

               
               ute (0.531138)
               

               
               nmm (0.398406)
               

               
               ill (0.351185)
               

               
               cli (0.305623)
               

               
               jej (0.296765)
               

               
               ski (0.29347)
               

               
               lnt (0.284616)
               

               
               csk (0.281492)
               

               
               ova (0.258264)
               

               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               nbm (0.198649)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               isp (0.150376)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               cov (0.132153)
               

               
               cbr (0.127975)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	124-994, gnl\|bosTau2\|chr19 (6173032-6172154)
	124-994, gnl\|Hg17\|chr19 (18146848-18149946)

	cag (1.36075)
	cly (0.723851)
	cga (0.558191)
	ute (0.531138)
	nmm (0.398406)
	ill (0.351185)
	cli (0.305623)
	jej (0.296765)
	ski (0.29347)
	lnt (0.284616)
	csk (0.281492)
	ova (0.258264)
	med (0.232504)
	jca (0.22792)
	nbm (0.198649)
	col (0.195008)
	nlu (0.191681)
	fbs (0.175346)
	rec (0.17307)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	eli (0.151814)
	isp (0.150376)
	nca (0.136874)
	ssp (0.13552)
	cov (0.132153)
	cbr (0.127975)
	eru (0.120048)
	ebs (0.118301)