Non-Coding RNA Search

Ss1.1-Pig4-TMW8062F15.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAGTTTTCAA
AAGTTCTTAAAGGCAAGAGTGAATTTCTGTGGATTTTACTGGTCCCAGCTTTTAGGTTCT
TTAAGACACTAACAGGACTGCATAGAGGCTTTTTCAGCATTACTGTATTGTCTCCCGCTA
GATGTGGCAAGATCACCACTAGAAATGGAAATTACATTCGAAAGCCGTTAGACTTCTAGA
TGATGCAAGCATCTAAGAAAAAGGTTAATCACACTATAGAGGTGTATGTGATATCTTTTT
TCCTTTTTCTAATTGTTTGAATTTTATATCAATGTTTAAAATTAATTGGGTTTTAGCTTG
AGGTGGTTAAAGATTCGATTGTTTAGAGTTTGTTGTAATGGTTTTGCTGTAATAAGTGTT
TCAAACTCTGCTGAAAATGTTGCTGAAAAGCATGGTGCTGGTAACAGTTCAAGAATCCGT
GGCTGCTCATTCTTGCCTACTTTTATTCTCCCTCTAAAGCAGGTTAGCATTGAAGGTGGT
ATGGAAAAGCCTGCATGCGTGTTCAATTCTTTGTTTCTTCTCCTTCCCTCTCCCCCGGGC
CCTGCCCCTCCCCTCCTTCGCTCGCTCAACCTCTTTTGTTCAGTATGTGTAACTTGAAGC
TAATTTGTACTACTGGATATCTGACTGGAGCCACAGATACAGAATCTGTATTGTTCTTAC
TGAAACACAGCATGGATTAACATTAAACTTAAATAAAACAAACCTAAATTAAAAATGCCA
AAAAAAAAAAAAAAAAAAAAAAAATCCTTCTAAAATAAAATCTCTATAGTCTAAACACTA
GATCATATTGTTTGCCTGAACATGAAAACTCTTTTTCTTCCCTTCCATAAATCACTTGTC
TGTTTTCCAAAAAATGATGTGTATTTCAGGGAAAAGATTACTTATATCCTGGTTGTGAAG
AACAAGAAGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAACAGTTTTCAA
AAGTTCTTAAAGGCAAGAGTGAATTTCTGTGGATTTTACTGGTCCCAGCTTTTAGGTTCT
TTAAGACACTAACAGGACTGCATAGAGGCTTTTTCAGCATTACTGTATTGTCTCCCGCTA
GATGTGGCAAGATCACCACTAGAAATGGAAATTACATTCGAAAGCCGTTAGACTTCTAGA
TGATGCAAGCATCTAAGAAAAAGGTTAATCACACTATAGAGGTGTATGTGATATCTTTTT
TCCTTTTTCTAATTGTTTGAATTTTATATCAATGTTTAAAATTAATTGGGTTTTAGCTTG
AGGTGGTTAAAGATTCGATTGTTTAGAGTTTGTTGTAATGGTTTTGCTGTAATAAGTGTT
TCAAACTCTGCTGAAAATGTTGCTGAAAAGCATGGTGCTGGTAACAGTTCAAGAATCCGT
GGCTGCTCATTCTTGCCTACTTTTATTCTCCCTCTAAAGCAGGTTAGCATTGAAGGTGGT
ATGGAAAAGCCTGCATGCGTGTTCAATTCTTTGTTTCTTCTCCTTCCCTCTCCCCCGGGC
CCTGCCCCTCCCCTCCTTCGCTCGCTCAACCTCTTTTGTTCAGTATGTGTAACTTGAAGC
TAATTTGTACTACTGGATATCTGACTGGAGCCACAGATACAGAATCTGTATTGTTCTTAC
TGAAACACAGCATGGATTAACATTAAACTTAAATAAAACAAACCTAAATTAAAAATGCCA
AAAAAAAAAAAAAAAAAAAAAAAATCCTTCTAAAATAAAATCTCTATAGTCTAAACACTA
GATCATATTGTTTGCCTGAACATGAAAACTCTTTTTCTTCCCTTCCATAAATCACTTGTC
TGTTTTCCAAAAAATGATGTGTATTTCAGGGAAAAGATTACTTATATCCTGGTTGTGAAG
AACAAGAAGTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               575-694, - strand, RNAz p=0.549501
               

               
               851-970, - strand, RNAz p=0.97802

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               575-694, - strand, RNAz p=0.549501
               

               
               851-970, - strand, RNAz p=0.97802

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               28-970, gnl|bosTau2|chr19 (17031596-17030641)
               

               
               28-970, gnl|Hg17|chr17 (1195351-1194400)
               

               
               28-970, gnl|Mm7|chr11 (75846386-75847328)
               


               
               256-837, gnl|bosTau2|chr10 (26945388-26945964)
               

               
               256-837, gnl|Hg17|chr2 (138878966-138878431)
               

               
               256-837, gnl|Mm7|chr11 (75846646-75847205)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-970, gnl|bosTau2|chr19 (17031596-17030641)
               

               
               28-970, gnl|Hg17|chr17 (1195351-1194400)
               

               
               28-970, gnl|Mm7|chr11 (75846386-75847328)
               


               
               256-837, gnl|bosTau2|chr10 (26945388-26945964)
               

               
               256-837, gnl|Hg17|chr2 (138878966-138878431)
               

               
               256-837, gnl|Mm7|chr11 (75846646-75847205)

Expressed library(ies): 59 entry(ies)

More info

Expressed library(ies): 59 entry(ies)

Help | Less info


               
               ece (0.917221)
               

               
               eru (0.840336)
               

               
               amn (0.835422)
               

               
               tbr (0.770891)
               

               
               fhi (0.678311)
               

               
               lyg (0.665513)
               

               
               ebs (0.591506)
               

               
               hyp (0.571347)
               

               
               sto (0.539471)
               

               
               csp (0.483559)
               

               
               cbe (0.478469)
               

               
               isp (0.451128)
               

               
               ute (0.398353)
               

               
               col (0.390016)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               jca (0.34188)
               

               
               fco (0.314416)
               

               
               jej (0.296765)
               

               
               che (0.272628)
               

               
               ste (0.270416)
               

               
               nmm (0.265604)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 59 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.917221)
               

               
               eru (0.840336)
               

               
               amn (0.835422)
               

               
               tbr (0.770891)
               

               
               fhi (0.678311)
               

               
               lyg (0.665513)
               

               
               ebs (0.591506)
               

               
               hyp (0.571347)
               

               
               sto (0.539471)
               

               
               csp (0.483559)
               

               
               cbe (0.478469)
               

               
               isp (0.451128)
               

               
               ute (0.398353)
               

               
               col (0.390016)
               

               
               gul (0.355177)
               

               
               sin (0.349895)
               

               
               jca (0.34188)
               

               
               fco (0.314416)
               

               
               jej (0.296765)
               

               
               che (0.272628)
               

               
               ste (0.270416)
               

               
               nmm (0.265604)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               ese (0.253004)
               

               
               pgl (0.236967)
               

               
               ecc (0.23007)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	575-694, - strand, RNAz p=0.549501
	851-970, - strand, RNAz p=0.97802

	28-970, gnl\|bosTau2\|chr19 (17031596-17030641)
	28-970, gnl\|Hg17\|chr17 (1195351-1194400)
	28-970, gnl\|Mm7\|chr11 (75846386-75847328)

	256-837, gnl\|bosTau2\|chr10 (26945388-26945964)
	256-837, gnl\|Hg17\|chr2 (138878966-138878431)
	256-837, gnl\|Mm7\|chr11 (75846646-75847205)

	ece (0.917221)
	eru (0.840336)
	amn (0.835422)
	tbr (0.770891)
	fhi (0.678311)
	lyg (0.665513)
	ebs (0.591506)
	hyp (0.571347)
	sto (0.539471)
	csp (0.483559)
	cbe (0.478469)
	isp (0.451128)
	ute (0.398353)
	col (0.390016)
	gul (0.355177)
	sin (0.349895)
	jca (0.34188)
	fco (0.314416)
	jej (0.296765)
	che (0.272628)
	ste (0.270416)
	nmm (0.265604)
	ova (0.258264)
	sug (0.254582)
	ese (0.253004)
	pgl (0.236967)
	ecc (0.23007)
	nms (0.213858)
	tes (0.207814)
	hea (0.204499)
	sag (0.182715)
	mgm (0.180343)
	ill (0.175593)
	fbs (0.175346)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	cki (0.165235)
	nco (0.161734)
	mga (0.160205)
	cli (0.152812)
	eli (0.151814)
	lun (0.150489)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	lin (0.145603)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	kid (0.129735)
	ret (0.128733)
	thg (0.126791)
	eep (0.122564)
	cly (0.120642)
	spc (0.113366)
	nbm (0.0993246)
	eje (0.0988338)