Ss1.1-Pig4-TMW8062F18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCACTCCTATCCCCACGCCCCGGGAGAGCCTCGGCCAGAGCATGGAGCGTCAGGAGAAG GCGAACAACGCGGGCCACATGGTCGACGTAGTCGTGATAGGAGGCGGCATCTCAGGATTA TCTGCTGCCAAACTCTTAAATGAATATGGAATTAATGTTTTGGTTTTAGAAGCCCGGGAC AGAGTTGGAGGAAGAACATACACAGTGAGGAACGAAAATGTTGATTACGTGGACGTTGGT GGGGCTTATGTCGGACCGACCCAGAATAGGATCTTAAGGTTATCTAAGGAACTGGGTTTA GAAACTTACAAAGTGAATGTAAATGAGTGTCTCGTTCAGTATGTCAAGGGGAAATCTTAT CCATTTCGGGGTGCCTTCCCTCCAGTCTGGAATCCCATTGCCTATCTGGATTACAACAAC CTGTGGCGGACAATGGATGACATGGGAAAGAAGATTCCAGCTGATGCACCATGGGAGTCT CCGCATGCAGAGGAATGGGATAAGATGACCATGAAAGATCTCATCGATAAAATCTGTTGG ACAAAGACTGCTAAACGGTTTGCATCTCTCTTTGTAAATATCAATGTGACCTCCGAACCC CACGAAGTGTCTGCCCTGTGGTTTTTGTGGTATGTGAAGCAGTGTGGAGGCACCACCCGG ATATTCTCTGTTACCAACGGGGGCCAGGAACGGAAGTTTGTAGGCGGATCTGGTCAAGTA AGCGAACGGATAATGCACCTCCTCGGGGACAGAGTGAAGCTGAGGTGTCCTGTCACCTAT GTTGACCAGTCAGGTGACAACATCATCGTAGAGACATTGAATCATGAACTTTATGAGTGC CAATACGTAATTAGTGCCATCCCTCCAACTCTGACTGCCAAGATACACTTCAGACCGGAG CTTCCGTCAGAAAGAAACCAGTTAATTCAGCGTCTTCCGATGGGGGCTATCATTAAGTGC ATGATGTATTACAAGGAGGCCTTTTGGAAGAAGAAGAATTACTGTGGCTGTATGATCATC GAAGATGAGGAAGCTCCGATTTCAATAACTCTAGATGACACCAAGCCAGATGGATCGCTG CCCGCCATCATGGGCTTCATCCTTGCTCGAAAAGCTGACCGCCTTGCTAAGGTTCATAAA GAAATAAGAAAGCGGAAAATCTGTGAGCTCTACGCCAAAGTGCTAGGATCTCAAGAAGCT TTACATCCCGTGCACTATGAAGAGAAGAACTGGTGTGAGGAGCAGTACTCGGGGGGCTGC TACACTGCCTACTTCCCCCCTGGGATCATGACTCAGTATGGAAGGGTGATCCGCCAGCCC GTAGGCAGGATATTCTTTGCTGGCACCGAGACTGCCACACAATGGAGCGGTTACATGGAA GGAGCAGTAGAAGCCGGCGAACGGGCGGCTAGAGAGATCTTGAATGCTTTGGGGAAGGTG TCAAAGAAAGACATATGGCTTCGAGAACCTGAATCAGAGGATGTTCCAGCTTTTGAGATC ACCCGCACCTTCTGGGAGAGAAACCTGCCTTCCGTGACCGGGCTGCTTAAGATCATCGGA TTTTCCACCTCGGTAACTGCCCTGTGGCTTGCCGTGTACAAATTCAGGCTGCTGACCCGA TCCTGAAGTTTCGGCCTCATGCTTTCTGCTTATCCTTTCCCAGTATCATCCAAAGCAAAA CGTTGACAAATTGACACCTGTGTCATCAGATCACCTTTAAGTGCACCGATTTAACTCCTC AGTTTAATCTCAGTGTATCACTTCCTTGATTTCAGTAAGATCAAGTTCCACCTTGCGATT TGTCTGTAAACCAACTGGTGTTGATTGGTAGGAAATAACCTTGTGATCAGTTTTTCATTT CAAGAACTTAAAGTTGATGTACTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCACTCCTATCCCCACGCCCCGGGAGAGCCTCGGCCAGAGCATGGAGCGTCAGGAGAAG GCGAACAACGCGGGCCACATGGTCGACGTAGTCGTGATAGGAGGCGGCATCTCAGGATTA TCTGCTGCCAAACTCTTAAATGAATATGGAATTAATGTTTTGGTTTTAGAAGCCCGGGAC AGAGTTGGAGGAAGAACATACACAGTGAGGAACGAAAATGTTGATTACGTGGACGTTGGT GGGGCTTATGTCGGACCGACCCAGAATAGGATCTTAAGGTTATCTAAGGAACTGGGTTTA GAAACTTACAAAGTGAATGTAAATGAGTGTCTCGTTCAGTATGTCAAGGGGAAATCTTAT CCATTTCGGGGTGCCTTCCCTCCAGTCTGGAATCCCATTGCCTATCTGGATTACAACAAC CTGTGGCGGACAATGGATGACATGGGAAAGAAGATTCCAGCTGATGCACCATGGGAGTCT CCGCATGCAGAGGAATGGGATAAGATGACCATGAAAGATCTCATCGATAAAATCTGTTGG ACAAAGACTGCTAAACGGTTTGCATCTCTCTTTGTAAATATCAATGTGACCTCCGAACCC CACGAAGTGTCTGCCCTGTGGTTTTTGTGGTATGTGAAGCAGTGTGGAGGCACCACCCGG ATATTCTCTGTTACCAACGGGGGCCAGGAACGGAAGTTTGTAGGCGGATCTGGTCAAGTA AGCGAACGGATAATGCACCTCCTCGGGGACAGAGTGAAGCTGAGGTGTCCTGTCACCTAT GTTGACCAGTCAGGTGACAACATCATCGTAGAGACATTGAATCATGAACTTTATGAGTGC CAATACGTAATTAGTGCCATCCCTCCAACTCTGACTGCCAAGATACACTTCAGACCGGAG CTTCCGTCAGAAAGAAACCAGTTAATTCAGCGTCTTCCGATGGGGGCTATCATTAAGTGC ATGATGTATTACAAGGAGGCCTTTTGGAAGAAGAAGAATTACTGTGGCTGTATGATCATC GAAGATGAGGAAGCTCCGATTTCAATAACTCTAGATGACACCAAGCCAGATGGATCGCTG CCCGCCATCATGGGCTTCATCCTTGCTCGAAAAGCTGACCGCCTTGCTAAGGTTCATAAA GAAATAAGAAAGCGGAAAATCTGTGAGCTCTACGCCAAAGTGCTAGGATCTCAAGAAGCT TTACATCCCGTGCACTATGAAGAGAAGAACTGGTGTGAGGAGCAGTACTCGGGGGGCTGC TACACTGCCTACTTCCCCCCTGGGATCATGACTCAGTATGGAAGGGTGATCCGCCAGCCC GTAGGCAGGATATTCTTTGCTGGCACCGAGACTGCCACACAATGGAGCGGTTACATGGAA GGAGCAGTAGAAGCCGGCGAACGGGCGGCTAGAGAGATCTTGAATGCTTTGGGGAAGGTG TCAAAGAAAGACATATGGCTTCGAGAACCTGAATCAGAGGATGTTCCAGCTTTTGAGATC ACCCGCACCTTCTGGGAGAGAAACCTGCCTTCCGTGACCGGGCTGCTTAAGATCATCGGA TTTTCCACCTCGGTAACTGCCCTGTGGCTTGCCGTGTACAAATTCAGGCTGCTGACCCGA TCCTGAAGTTTCGGCCTCATGCTTTCTGCTTATCCTTTCCCAGTATCATCCAAAGCAAAA CGTTGACAAATTGACACCTGTGTCATCAGATCACCTTTAAGTGCACCGATTTAACTCCTC AGTTTAATCTCAGTGTATCACTTCCTTGATTTCAGTAAGATCAAGTTCCACCTTGCGATT TGTCTGTAAACCAACTGGTGTTGATTGGTAGGAAATAACCTTGTGATCAGTTTTTCATTT CAAGAACTTAAAGTTGATGTACTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 1-116, gnl|bosTau2|chrX (29387935-29388050) | |
| 1-116, gnl|Hg17|chrX (43271802-43271917) | |
| 1-116, gnl|Mm7|chrX (15052949-15053064) | |
| 210-349, gnl|bosTau2|chrX (29418998-29419137) | |
| 210-349, gnl|Hg17|chrX (43308791-43308930) | |
| 210-349, gnl|Mm7|chrX (15072213-15072352) | |
| 540-697, gnl|bosTau2|chrX (29445544-29445700) | |
| 540-697, gnl|Hg17|chrX (43343668-43343830) | |
| 540-697, gnl|Mm7|chrX (15095461-15095617) | |
| 836-996, gnl|bosTau2|chrX (29452549-29452709) | |
| 836-996, gnl|canFam2|chrX (37680569-37680762) | |
| 836-996, gnl|danRer3|chr9 (32388458-32388261) | |
| 836-996, gnl|dasNov1|scaffold_22669 (45065-45262) | |
| 836-996, gnl|echTel1|scaffold_317495 (3495-3690) | |
| 836-996, gnl|fr1|chrUn (229888406-229888585) | |
| 836-996, gnl|galGal2|chr1 (105014540-105014358) | |
| 836-996, gnl|hg17|chrX (43347181-43347376) | |
| 836-996, gnl|Hg17|chrX (43347193-43347353) | |
| 836-996, gnl|loxAfr1|scaffold_70389 (9031-8852) | |
| 836-996, gnl|mm7|chrX (15098789-15098983) | |
| 836-996, gnl|Mm7|chrX (15098800-15098960) | |
| 836-996, gnl|monDom2|scaffold_29 (19531479-19531284) | |
| 836-996, gnl|oryCun1|scaffold_208467 (74124-74319) | |
| 836-996, gnl|panTro1|chrX (44783993-44784188) | |
| 836-996, gnl|rheMac2|chrX (41474826-41475021) | |
| 836-996, gnl|rn3|chrX (17745720-17745526) | |
| 836-996, gnl|tetNig1|chr2 (6485805-6485985) | |
| 836-996, gnl|xenTro1|scaffold_16 (411171-411004) | |
| 1198-1305, gnl|bosTau2|chrX (29496435-29496328) | |
| 1198-1305, gnl|canFam2|chrX (37723370-37723502) | |
| 1198-1305, gnl|danRer3|chr9 (32384238-32384368) | |
| 1198-1305, gnl|dasNov1|scaffold_284637 (170-38) | |
| 1198-1305, gnl|echTel1|scaffold_305546 (49332-49200) | |
| 1198-1305, gnl|fr1|chrUn (229889580-229889448) | |
| 1198-1305, gnl|galGal2|chr1 (104990513-104990401) | |
| 1198-1305, gnl|hg17|chrX (43390674-43390806) | |
| 1198-1305, gnl|Hg17|chrX (43390782-43390675) | |
| 1198-1305, gnl|loxAfr1|scaffold_21312 (42837-42706) | |
| 1198-1305, gnl|mm7|chrX (15149534-15149667) | |
| 1198-1305, gnl|Mm7|chrX (15149643-15149535) | |
| 1198-1305, gnl|monDom2|scaffold_29 (19442023-19441893) | |
| 1198-1305, gnl|oryCun1|scaffold_208467 (126887-127019) | |
| 1198-1305, gnl|panTro1|chrX (44794423-44794318) | |
| 1198-1305, gnl|rheMac2|chrX (41515543-41515675) | |
| 1198-1305, gnl|rn3|chrX (17703328-17703195) | |
| 1198-1305, gnl|tetNig1|chr2 (6486648-6486545) | |
| 1198-1305, gnl|xenTro1|scaffold_16 (369155-369035) | |
| 1478-1884, gnl|bosTau2|chrX (29468861-29469269) | |
| 1478-1884, gnl|Hg17|chrX (43359866-43360302) | |
| 1478-1884, gnl|Mm7|chrX (15118380-15118797) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-116, gnl|bosTau2|chrX (29387935-29388050) | |
| 1-116, gnl|Hg17|chrX (43271802-43271917) | |
| 1-116, gnl|Mm7|chrX (15052949-15053064) | |
| 210-349, gnl|bosTau2|chrX (29418998-29419137) | |
| 210-349, gnl|Hg17|chrX (43308791-43308930) | |
| 210-349, gnl|Mm7|chrX (15072213-15072352) | |
| 540-697, gnl|bosTau2|chrX (29445544-29445700) | |
| 540-697, gnl|Hg17|chrX (43343668-43343830) | |
| 540-697, gnl|Mm7|chrX (15095461-15095617) | |
| 836-996, gnl|bosTau2|chrX (29452549-29452709) | |
| 836-996, gnl|canFam2|chrX (37680569-37680762) | |
| 836-996, gnl|danRer3|chr9 (32388458-32388261) | |
| 836-996, gnl|dasNov1|scaffold_22669 (45065-45262) | |
| 836-996, gnl|echTel1|scaffold_317495 (3495-3690) | |
| 836-996, gnl|fr1|chrUn (229888406-229888585) | |
| 836-996, gnl|galGal2|chr1 (105014540-105014358) | |
| 836-996, gnl|hg17|chrX (43347181-43347376) | |
| 836-996, gnl|Hg17|chrX (43347193-43347353) | |
| 836-996, gnl|loxAfr1|scaffold_70389 (9031-8852) | |
| 836-996, gnl|mm7|chrX (15098789-15098983) | |
| 836-996, gnl|Mm7|chrX (15098800-15098960) | |
| 836-996, gnl|monDom2|scaffold_29 (19531479-19531284) | |
| 836-996, gnl|oryCun1|scaffold_208467 (74124-74319) | |
| 836-996, gnl|panTro1|chrX (44783993-44784188) | |
| 836-996, gnl|rheMac2|chrX (41474826-41475021) | |
| 836-996, gnl|rn3|chrX (17745720-17745526) | |
| 836-996, gnl|tetNig1|chr2 (6485805-6485985) | |
| 836-996, gnl|xenTro1|scaffold_16 (411171-411004) | |
| 1198-1305, gnl|bosTau2|chrX (29496435-29496328) | |
| 1198-1305, gnl|canFam2|chrX (37723370-37723502) | |
| 1198-1305, gnl|danRer3|chr9 (32384238-32384368) | |
| 1198-1305, gnl|dasNov1|scaffold_284637 (170-38) | |
| 1198-1305, gnl|echTel1|scaffold_305546 (49332-49200) | |
| 1198-1305, gnl|fr1|chrUn (229889580-229889448) | |
| 1198-1305, gnl|galGal2|chr1 (104990513-104990401) | |
| 1198-1305, gnl|hg17|chrX (43390674-43390806) | |
| 1198-1305, gnl|Hg17|chrX (43390782-43390675) | |
| 1198-1305, gnl|loxAfr1|scaffold_21312 (42837-42706) | |
| 1198-1305, gnl|mm7|chrX (15149534-15149667) | |
| 1198-1305, gnl|Mm7|chrX (15149643-15149535) | |
| 1198-1305, gnl|monDom2|scaffold_29 (19442023-19441893) | |
| 1198-1305, gnl|oryCun1|scaffold_208467 (126887-127019) | |
| 1198-1305, gnl|panTro1|chrX (44794423-44794318) | |
| 1198-1305, gnl|rheMac2|chrX (41515543-41515675) | |
| 1198-1305, gnl|rn3|chrX (17703328-17703195) | |
| 1198-1305, gnl|tetNig1|chr2 (6486648-6486545) | |
| 1198-1305, gnl|xenTro1|scaffold_16 (369155-369035) | |
| 1478-1884, gnl|bosTau2|chrX (29468861-29469269) | |
| 1478-1884, gnl|Hg17|chrX (43359866-43360302) | |
| 1478-1884, gnl|Mm7|chrX (15118380-15118797) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| cje (1.32188) | |
| sin (1.04969) | |
| gul (0.887942) | |
| duo (0.864006) | |
| aor (0.781097) | |
| pgl (0.473934) | |
| sug (0.381874) | |
| bla (0.373042) | |
| rec (0.346141) | |
| nco (0.323468) | |
| fat (0.294855) | |
| ski (0.29347) | |
| cov (0.264306) | |
| kid (0.259471) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| spc (0.226732) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| liv (0.146284) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| ova (0.129132) | |
| eep (0.122564) | |
| eru (0.120048) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (1.32188) | |
| sin (1.04969) | |
| gul (0.887942) | |
| duo (0.864006) | |
| aor (0.781097) | |
| pgl (0.473934) | |
| sug (0.381874) | |
| bla (0.373042) | |
| rec (0.346141) | |
| nco (0.323468) | |
| fat (0.294855) | |
| ski (0.29347) | |
| cov (0.264306) | |
| kid (0.259471) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| spc (0.226732) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| liv (0.146284) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| ova (0.129132) | |
| eep (0.122564) | |
| eru (0.120048) | |
| jca (0.11396) | |
| cty (0.10408) | |
| jej (0.0989218) |