Non-Coding RNA Search

Ss1.1-Pig4-TMW8062G08.5

Sequence:


               
               GGGCGAGAGGTGTTTCTAATTTTAAAAGGTGGAACTCAGGTTTGGTGTTTGTTTTTTTTT
TTAAGTGCCTAAATAAGTAAGCCAGGCTGTTTATACAGAAACATTTTCATAAGAAAATGG
TTTTATCTAGATTGTCTTACTCAGTTATCTATCATTAAGTCAAGATAAACCTGAATTTGA
AGTTTAGGATCTGAGTGTGTGTGTCTACGTCTTATCACATAGTGCTGATTAGGAAAGATT
TGCCATAAAGGAATTAGGAGAGGGCAGGGGGACAGTGTCAGAATGTGTCCGGTGAGCTTA
CTTAATGGTTTCTTCAAAGTGGAGGAAAAGTATTAAAAGAATGATAGTAAAAAAAAGTTA
AGGAAGCTGGAAAGTAGCTAGATTGACTGCATGACATGTGATAGCCAATATTATTTTGAG
CTAAATTCCAAGAGAAAAGTGTGATACTGAATGTATACAGGTCTCTGAAAAAATACTGTG
GACTAAGCCCAGGGAAGATGGACAGTGTTCCAGCACGTCCTTCTGTAAGTAAAACAAAGC
ACAGCTTTAAATTGTCCAAGTGTGACAGACAGCCTTGTCGAGTAACAGTCAATAGAAAGT
TAAGAATCAAGGAGTCTTAGTGATTTATTCAATGCCACTTCTTGCCATCATTTTAAAATT
GTTCAACTGGGCACAGTTCAGAAAGCAAACCCAACACCTCTGTGGAGAGAGCCCCCCTCG
TGCTCCGGGTGGGATCACCTCTGCAGGAGAGCTTTCCATTCTCTCTTAAAGGCAGAGTGC
TTGTAGGTTTTGCCTCTTTACTTTGTATTTACTTTTAAAGTTGCACTTGTTCACCTACCA
GTGTTTACAAAATCCTATATTTGGGATGCCTTTTCTATAATAAAATGTTTTTATTTGTGA
CCCTGTCGTTTTTCAGCAGAAAATAAAATCAGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGAGAGGTGTTTCTAATTTTAAAAGGTGGAACTCAGGTTTGGTGTTTGTTTTTTTTT
TTAAGTGCCTAAATAAGTAAGCCAGGCTGTTTATACAGAAACATTTTCATAAGAAAATGG
TTTTATCTAGATTGTCTTACTCAGTTATCTATCATTAAGTCAAGATAAACCTGAATTTGA
AGTTTAGGATCTGAGTGTGTGTGTCTACGTCTTATCACATAGTGCTGATTAGGAAAGATT
TGCCATAAAGGAATTAGGAGAGGGCAGGGGGACAGTGTCAGAATGTGTCCGGTGAGCTTA
CTTAATGGTTTCTTCAAAGTGGAGGAAAAGTATTAAAAGAATGATAGTAAAAAAAAGTTA
AGGAAGCTGGAAAGTAGCTAGATTGACTGCATGACATGTGATAGCCAATATTATTTTGAG
CTAAATTCCAAGAGAAAAGTGTGATACTGAATGTATACAGGTCTCTGAAAAAATACTGTG
GACTAAGCCCAGGGAAGATGGACAGTGTTCCAGCACGTCCTTCTGTAAGTAAAACAAAGC
ACAGCTTTAAATTGTCCAAGTGTGACAGACAGCCTTGTCGAGTAACAGTCAATAGAAAGT
TAAGAATCAAGGAGTCTTAGTGATTTATTCAATGCCACTTCTTGCCATCATTTTAAAATT
GTTCAACTGGGCACAGTTCAGAAAGCAAACCCAACACCTCTGTGGAGAGAGCCCCCCTCG
TGCTCCGGGTGGGATCACCTCTGCAGGAGAGCTTTCCATTCTCTCTTAAAGGCAGAGTGC
TTGTAGGTTTTGCCTCTTTACTTTGTATTTACTTTTAAAGTTGCACTTGTTCACCTACCA
GTGTTTACAAAATCCTATATTTGGGATGCCTTTTCTATAATAAAATGTTTTTATTTGTGA
CCCTGTCGTTTTTCAGCAGAAAATAAAATCAGGGAG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               288-540, gnl|bosTau2|chr10 (4983300-4983553)
               

               
               288-540, gnl|Hg17|chr6 (36565669-36565909)
               


               
               675-897, gnl|bosTau2|chr10 (4985645-4985870)
               

               
               675-897, gnl|Hg17|chr6 (36566673-36566896)
               

               
               675-897, gnl|Mm7|chr7 (15337830-15337624)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               288-540, gnl|bosTau2|chr10 (4983300-4983553)
               

               
               288-540, gnl|Hg17|chr6 (36565669-36565909)
               


               
               675-897, gnl|bosTau2|chr10 (4985645-4985870)
               

               
               675-897, gnl|Hg17|chr6 (36566673-36566896)
               

               
               675-897, gnl|Mm7|chr7 (15337830-15337624)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

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               elu (0.385356)
               

               
               sug (0.381874)
               

               
               liv (0.292569)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               liv (0.292569)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	288-540, gnl\|bosTau2\|chr10 (4983300-4983553)
	288-540, gnl\|Hg17\|chr6 (36565669-36565909)

	675-897, gnl\|bosTau2\|chr10 (4985645-4985870)
	675-897, gnl\|Hg17\|chr6 (36566673-36566896)
	675-897, gnl\|Mm7\|chr7 (15337830-15337624)

	elu (0.385356)
	sug (0.381874)
	liv (0.292569)
	thg (0.253582)
	mgp (0.230681)
	hea (0.204499)
	fcc (0.197785)
	sin (0.174948)
	cje (0.165235)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	csk (0.140746)
	ste (0.135208)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)
	clu (0.119646)
	pgl (0.118483)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)